M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_33834

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_33834 20 0.42 Mlig455_061224

Neo: -

Age: -

 Mlig455_061224 {REF} {Length: 2426} {Celegans: WBGene00016348, C33E10.6, [Score=97.1, Expect=1e-20]} {Smed: dd_Smed_v6_9974_1_9, dd_Smed_v6_9974_1_9, [Score=112, Expect=2e-26]} {RNA1310_92091} {RNA815_44098}

Cumulative graph for MligTC455_33834

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.221 0.742 1.00000 1.00000
RegionR2 -1.438 0.742 0.99990 1.00000
RegionR3 -0.006 0.742 0.99998 1.00000
RegionR4 1.476 0.742 0.99998 1.00000
RegionR5 0.612 0.742 1.00000 1.00000
RegionR6 -0.143 0.742 0.99999 1.00000
RegionR7 -0.309 0.742 1.00000 1.00000
RegionR8 0.029 0.742 0.99998 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.346 0.742 1.00000 1.00000
RegenerationR2 2.867 0.742 0.05772 0.39531
RegenerationR3 1.571 0.742 0.37230 0.78483
RegenerationR4 1.014 0.742 0.37967 0.80080
RegenerationR5 2.992 0.742 0.08136 0.44275
RegenerationR6 2.514 0.742 0.26414 0.61407
RegenerationBL -0.776 0.742 0.99999 1.00000
RegenerationTP 2.389 0.742 0.49441 0.89791


Genes with expression patterns similar to MligTC455_33834

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_33834 20 0.42 Mlig455_061224

Neo: -

Age: -

 2 - - - 1.000 1.000 - Mlig455_061224 {REF} {Length: 2426} {Celegans: WBGene00016348, C33E10.6, [Score=97.1, Expect=1e-20]} {Smed: dd_Smed_v6_9974_1_9, dd_Smed_v6_9974_1_9, [Score=112, Expect=2e-26]} {RNA1310_92091} {RNA815_44098}
2. MligTC455_31381 87 1.81 Mlig455_034975, Mlig455_053710

Neo: -

Age: Up-Up-Down, logFC(26M/2M)=4.497

 HSP90AA1 0.99 - - - - 0.990 -

Mlig455_034975 {REF} {Length: 2826} {Pfam: Hsp90 protein [PF00183.20, score=753.4]; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase [PF02518.28, score=52.5]; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase [PF13589.8, score=39.0]} {Human: ENSG00000080824, HSP90AA1, heat shock protein 90 alpha family class A member 1, [RH, Score=1065, Expect=0.0]; ENSG00000096384, HSP90AB1, heat shock protein 90 alpha family class B member 1, [RH, Score=1040, Expect=0.0]} {Mouse: ENSMUSG00000021270, Hsp90aa1, heat shock protein 90, alpha (cytosolic), class A member 1, [RH, Score=1079, Expect=0.0]; ENSMUSG00000023944, Hsp90ab1, heat shock protein 90 alpha (cytosolic), class B member 1, [RH, Score=1043, Expect=0.0]} {Dmel: FBgn0001233, Hsp83, Heat shock protein 83, [RH, Score=1093, Expect=0.0]} {Celegans: WBGene00000915, daf-21, Heat shock protein 90, [RH, Score=1017, Expect=0.0]} {Smed: dd_Smed_v6_56_0_2, dd_Smed_v6_56_0_2, [RH, Score=1125, Expect=0.0]} {RNA1509_125} {RNA1310_6914.1} {RNA815_2025.1}

Mlig455_053710 {REF} {Length: 2826} {Pfam: Hsp90 protein [PF00183.20, score=753.4]; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase [PF02518.28, score=52.5]; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase [PF13589.8, score=39.0]} {Human: ENSG00000080824, HSP90AA1, heat shock protein 90 alpha family class A member 1, [RH, Score=1065, Expect=0.0]; ENSG00000096384, HSP90AB1, heat shock protein 90 alpha family class B member 1, [RH, Score=1040, Expect=0.0]} {Mouse: ENSMUSG00000021270, Hsp90aa1, heat shock protein 90, alpha (cytosolic), class A member 1, [RH, Score=1079, Expect=0.0]; ENSMUSG00000023944, Hsp90ab1, heat shock protein 90 alpha (cytosolic), class B member 1, [RH, Score=1043, Expect=0.0]} {Dmel: FBgn0001233, Hsp83, Heat shock protein 83, [RH, Score=1093, Expect=0.0]} {Celegans: WBGene00000915, daf-21, Heat shock protein 90, [RH, Score=1017, Expect=0.0]} {Smed: dd_Smed_v6_56_0_2, dd_Smed_v6_56_0_2, [RH, Score=1125, Expect=0.0]} {RNA1509_125} {RNA1310_6914.1} {RNA815_2025.1}
3. MligTC455_11836 23 0.47 Mlig455_002196

Neo: -

Age: -

 0.981 - - - 0.981 - - Mlig455_002196 {REF} {Length: 212} {NoTransDecoderORF} {RNA1509_39174} {RNA1310_96981.1} {RNA815_34070.1}
4. MligTC455_11042 103 2.15 Mlig455_050306

Neo: Int S/G2/M

Age: -

 0.978 - - - - 0.978 - Mlig455_050306 {REF} {Length: 849} {NoTransDecoderORF} {RNA1310_65300} {RNA815_27023}
5. MligTC455_33173 126 2.62 Mlig455_032100

Neo: -

Age: -

 0.976 - - - - 0.976 - Mlig455_032100 {REF} {Length: 3296} {Celegans: WBGene00015646, mlt-10, [Score=50.4, Expect=5e-06]} {RNA1310_89028} {RNA815_38477.1}
6. MligTC455_53337 48 1.01 Mlig455_007511, Mlig455_067679

Neo: -

Age: -

 0.973 - - - - 0.973 -

Mlig455_007511 {REF} {Length: 3196} {Pfam: Immunoglobulin domain [PF13895.8, score=37.0]; Immunoglobulin domain [PF13927.8, score=23.5]} {RNA1509_58583} {RNA1310_50684.1} {RNA815_25388}

Mlig455_067679 {REF} {Length: 1900} {RNA1509_58583} {RNA1310_72577} {RNA815_25388}
7. MligTC455_00208 6 0.13 Mlig455_028933

Neo: -

Age: -

 0.97 - - - - 0.970 - Mlig455_028933 {REF} {Length: 249} {NoTransDecoderORF}
8. MligTC455_18483 9 0.18 Mlig455_053378

Neo: -

Age: -

 0.97 - - - - 0.970 - Mlig455_053378 {REF} {Length: 694} {RNA1310_134914}
9. MligTC455_09930 62 1.28 Mlig455_007950, Mlig455_008051

Neo: -

Age: -

 0.969 - - - 0.969 - -

Mlig455_007950 {REF} {Length: 561} {NoTransDecoderORF} {RNA1310_28876.2} {RNA815_33150}

Mlig455_008051 {REF} {Length: 1404} {RNA1509_11045} {RNA1310_28876.2} {RNA815_37437}
10. MligTC455_22987 22 0.46 Mlig455_006174

Neo: -

Age: -

 0.965 - - - - 0.965 - Mlig455_006174 {REF} {Length: 1429} {RNA1509_32134} {RNA1310_21286.1}
11. MligTC455_53336 27 0.56 Mlig455_007416

Neo: -

Age: -

 0.964 - - - - 0.964 - Mlig455_007416 {REF} {Length: 2485} {Pfam: Immunoglobulin domain [PF13895.8, score=36.3]; Immunoglobulin domain [PF13927.8, score=19.9]} {RNA1509_58583} {RNA1310_50684.1} {RNA815_25388}
12. MligTC455_00387 32 0.66 Mlig455_025051, Mlig455_025067

Neo: -

Age: -

 0.963 - - - - 0.963 -

Mlig455_025051 {REF} {Length: 625} {NoTransDecoderORF}

Mlig455_025067 {REF} {Length: 1006}
13. MligTC455_16992 25 0.51 Mlig455_058183

Neo: -

Age: -

 0.951 - - - 0.951 - - Mlig455_058183 {REF} {Length: 3198} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=123.5]; WSC domain [PF01822.21, score=40.6]} {Celegans: WBGene00003168, mec-4, Degenerin mec-4, [Score=59.7, Expect=7e-09]} {Smed: dd_Smed_v6_21491_0_1, dd_Smed_v6_21491_0_1, [Score=58.9, Expect=8e-09]} {RNA1509_20328} {RNA1310_3478} {RNA815_19382.1}
14. MligTC455_38846 11 0.24 Mlig455_071125

Neo: -

Age: Down-Up-Down

 SETMAR 0.95 - - - - 0.950 - Mlig455_071125 {REF} {Length: 2680} {Pfam: DDE superfamily endonuclease [PF13358.8, score=35.0]; Transposase (partial DDE domain) [PF01359.20, score=32.8]; HTH domain in Mos1 transposase [PF17906.3, score=29.9]; Homeodomain-like domain [PF13565.8, score=25.1]} {Human: ENSG00000170364, SETMAR, SET domain and mariner transposase fusion gene, [Score=150, Expect=9e-41]} {Smed: dd_Smed_v6_52102_0_1, dd_Smed_v6_52102_0_1, [Score=68.2, Expect=2e-14]} {RNA1509_17190} {RNA1310_25865} {RNA815_362.2}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA