Data search


search
Exact
Search

Results for MligTC455_33990

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_33990 2322 48.37 Mlig455_064209

Neo: Int S/G2/M

Age: logFC(26M/2M)=0.220

Mlig455_064209 {REF} {Length: 1406} {RNA1509_1403, RNA1509_9077} {RNA1310_4629.1, RNA1509_9077} {RNA1509_9077, RNA815_269.1}

Cumulative graph for MligTC455_33990

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.983 5.823 0.12121 0.71501
RegionR2 -0.159 5.823 0.64503 0.98183
RegionR3 0.722 5.823 0.00724 0.12279
RegionR4 0.169 5.823 0.58543 0.90112
RegionR5 0.771 5.823 0.00188 0.01665
RegionR6 0.047 5.823 0.86885 1.00000
RegionR7 -0.039 5.823 0.89917 1.00000
RegionR8 -0.529 5.823 0.15783 0.71911

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -2.149 5.823 0.10368 0.82371
RegenerationR2 -0.221 5.823 0.50442 0.87294
RegenerationR3 -0.454 5.823 0.17967 0.61549
RegenerationR4 0.156 5.823 0.65245 0.93445
RegenerationR5 -0.102 5.823 0.75288 0.97249
RegenerationR6 0.383 5.823 0.26156 0.61165
RegenerationBL -0.106 5.823 0.77125 1.00000
RegenerationTP -0.802 5.823 0.06113 0.40028


Genes with expression patterns similar to MligTC455_33990

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_33990 2322 48.37 Mlig455_064209

Neo: Int S/G2/M

Age: logFC(26M/2M)=0.220

6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_064209 {REF} {Length: 1406} {RNA1509_1403, RNA1509_9077} {RNA1310_4629.1, RNA1509_9077} {RNA1509_9077, RNA815_269.1}
2. MligTC455_13253 727 15.15 Mlig455_000519

Neo: -

Age: -

Region-enriched R5: 1.363/0.00499

PRMT5 2.575 0.824 - - 0.955 0.796 - Mlig455_000519 {REF} {Length: 2673} {TRANSSPLICED} {Pfam: PRMT5 arginine-N-methyltransferase [PF05185.18, score=193.6]; PRMT5 TIM barrel domain [PF17285.4, score=193.0]; PRMT5 oligomerisation domain [PF17286.4, score=155.4]} {Human: ENSG00000100462, PRMT5, protein arginine methyltransferase 5, [RH, Score=526, Expect=3e-179]} {Mouse: ENSMUSG00000023110, Prmt5, protein arginine N-methyltransferase 5, [RH, Score=519, Expect=2e-176]} {Dmel: FBgn0015925, csul, capsuleen, [RH, Score=358, Expect=8e-115]} {Celegans: WBGene00016408, prmt-5, Protein arginine N-methyltransferase 5, [RH, Score=287, Expect=2e-86]} {Smed: dd_Smed_v6_8688_0_1, dd_Smed_v6_8688_0_1, [RH, Score=466, Expect=5e-156]} {RNA1509_6180} {RNA1310_7540.1} {RNA815_6900}
3. MligTC455_23619 292 6.09 Mlig455_015174

Neo: -

Age: -

NUBP1 2.428 0.745 - - 0.957 - 0.726 Mlig455_015174 {REF} {Length: 6201} {TRANSSPLICED} {Pfam: NUBPL iron-transfer P-loop NTPase [PF10609.11, score=294.3]; mbt repeat [PF02820.20, score=108.4]; SLED domain [PF12140.10, score=86.1]; CobQ/CobB/MinD/ParA nucleotide binding domain [PF01656.25, score=27.7]; AAA domain [PF13614.8, score=21.0]; AAA domain [PF13500.8, score=18.7]} {Human: ENSG00000103274, NUBP1, nucleotide binding protein 1, [RH, Score=378, Expect=2e-121]} {Mouse: ENSMUSG00000022503, Nubp1, nucleotide binding protein 1, [RH, Score=383, Expect=2e-123]} {Dmel: FBgn0032597, CG17904, [RH, Score=315, Expect=3e-98]} {Celegans: WBGene00008664, nubp-1, Cytosolic Fe-S cluster assembly factor NUBP1 homolog, [RH, Score=365, Expect=6e-117]} {Smed: dd_Smed_v6_3014_0_1, dd_Smed_v6_3014_0_1, [RH, Score=330, Expect=1e-103]} {RNA1509_11523} {RNA1310_4982.2} {RNA815_1974}
4. MligTC455_48222 885 18.44 Mlig455_031424, Mlig455_056469

Neo: -

Age: Down-Up-Up

GFER 2.419 - - - 0.721 0.965 0.733

Mlig455_031424 {REF} {Length: 1606} {TRANSSPLICED} {Pfam: Erv1 / Alr family [PF04777.15, score=104.4]} {Human: ENSG00000127554, GFER, growth factor, augmenter of liver regeneration, [RH, Score=147, Expect=2e-44]} {Mouse: ENSMUSG00000040888, Gfer, growth factor, augmenter of liver regeneration, [RH, Score=139, Expect=2e-41]} {Dmel: FBgn0031068, Alr, Augmenter of liver regeneration, [RH, Score=134, Expect=6e-39]} {Celegans: WBGene00018955, F56C11.3, Sulfhydryl oxidase, [RH, Score=140, Expect=1e-42]} {Smed: dd_Smed_v6_9440_0_1, dd_Smed_v6_9440_0_1, [RH, Score=160, Expect=8e-51]} {RNA1509_41230} {RNA1310_32417.1} {RNA815_24929}

Mlig455_056469 {REF} {Length: 1066} {TRANSSPLICED} {Pfam: Erv1 / Alr family [PF04777.15, score=104.3]} {Human: ENSG00000127554, GFER, growth factor, augmenter of liver regeneration, [RH, Score=149, Expect=5e-45]} {Mouse: ENSMUSG00000040888, Gfer, growth factor, augmenter of liver regeneration, [RH, Score=139, Expect=2e-41]} {Dmel: FBgn0031068, Alr, Augmenter of liver regeneration, [RH, Score=132, Expect=5e-38]} {Celegans: WBGene00018955, F56C11.3, Sulfhydryl oxidase, [RH, Score=140, Expect=2e-42]} {Smed: dd_Smed_v6_9440_0_1, dd_Smed_v6_9440_0_1, [RH, Score=161, Expect=6e-51]} {RNA1509_19287, RNA1509_41230} {RNA1310_32417.1, RNA1509_19287, RNA1509_41230} {RNA1509_19287, RNA1509_41230, RNA815_24929}
5. MligTC455_13252 756 15.76 Mlig455_000483

Neo: Int S/G2/M

Age: -

Region-enriched R5: 1.414/0.00198

PRMT5 2.389 0.716 - - 0.961 0.712 - Mlig455_000483 {REF} {Length: 2673} {TRANSSPLICED} {Pfam: PRMT5 TIM barrel domain [PF17285.4, score=194.3]; PRMT5 arginine-N-methyltransferase [PF05185.18, score=193.0]; PRMT5 oligomerisation domain [PF17286.4, score=155.4]} {Human: ENSG00000100462, PRMT5, protein arginine methyltransferase 5, [RH, Score=528, Expect=3e-180]} {Mouse: ENSMUSG00000023110, Prmt5, protein arginine N-methyltransferase 5, [RH, Score=521, Expect=2e-177]} {Dmel: FBgn0015925, csul, capsuleen, [RH, Score=356, Expect=8e-114]} {Celegans: WBGene00016408, prmt-5, Protein arginine N-methyltransferase 5, [RH, Score=286, Expect=4e-86]} {Smed: dd_Smed_v6_8688_0_1, dd_Smed_v6_8688_0_1, [RH, Score=466, Expect=6e-156]} {RNA1509_6180} {RNA1310_7540.1} {RNA815_6900}
6. MligTC455_45133 1102 22.97 Mlig455_029424

Neo: -

Age: Up-Down-Down

LAMC1 1.83 - - - 0.968 0.862 - Mlig455_029424 {REF} {Length: 4934} {Pfam: Laminin EGF domain [PF00053.26, score=234.3]; Laminin B (Domain IV) [PF00052.20, score=43.2]} {Human: ENSG00000135862, LAMC1, laminin subunit gamma 1, [Score=687, Expect=0.0]; ENSG00000050555, LAMC3, laminin subunit gamma 3, [Score=654, Expect=0.0]} {Mouse: ENSMUSG00000026478, Lamc1, laminin, gamma 1, [Score=681, Expect=0.0]; ENSMUSG00000026840, Lamc3, laminin gamma 3, [Score=647, Expect=0.0]} {Dmel: FBgn0267348, LanB2, Laminin B2, [Score=704, Expect=0.0]} {Celegans: WBGene00016913, lam-2, Laminin-like protein lam-2, [Score=644, Expect=0.0]} {Smed: dd_Smed_v6_7359_0_1, dd_Smed_v6_7359_0_1, [Score=608, Expect=0.0]} {RNA1509_19604} {RNA1310_816} {RNA815_1605}
7. MligTC455_25872 968 20.16 Mlig455_038016

Neo: -

Age: -

DNPEP 1.804 - - - 0.960 0.844 - Mlig455_038016 {REF} {Length: 2244} {TRANSSPLICED} {Pfam: Aminopeptidase I zinc metalloprotease (M18) [PF02127.17, score=490.1]} {Human: ENSG00000123992, DNPEP, aspartyl aminopeptidase, [RH, Score=457, Expect=5e-158]} {Mouse: ENSMUSG00000026209, Dnpep, aspartyl aminopeptidase, [RH, Score=451, Expect=2e-155]} {Celegans: WBGene00017163, dnpp-1, Aspartyl aminopeptidase, [RH, Score=392, Expect=9e-133]} {Smed: dd_Smed_v6_1052_0_1, dd_Smed_v6_1052_0_1, [RH, Score=490, Expect=2e-171]} {RNA1509_11426, RNA1509_40903, RNA1509_42461, RNA1509_53424} {RNA1310_3251.1, RNA1509_40903, RNA1509_42461, RNA1509_53424} {RNA1509_40903, RNA1509_42461, RNA1509_53424, RNA815_952.1}
8. MligTC455_53614 1517 31.61 Mlig455_024547

Neo: -

Age: -

Region-enriched R4: 1.088/0.00445

SLC25A42 1.799 - - - 0.958 - 0.841 Mlig455_024547 {REF} {Length: 3477} {TRANSSPLICED} {Pfam: Mitochondrial carrier protein [PF00153.29, score=229.7]} {Human: ENSG00000181035, SLC25A42, solute carrier family 25 member 42, [RH, Score=286, Expect=8e-95]} {Mouse: ENSMUSG00000002346, Slc25a42, solute carrier family 25, member 42, [RH, Score=287, Expect=1e-95]} {Dmel: FBgn0067783, DPCoAC, Dephosphocoenzyme A carrier, [RH, Score=284, Expect=8e-94]} {Celegans: WBGene00009666, slc-25A42, SLC (SoLute Carrier) homolog, [RH, Score=270, Expect=1e-89]} {Smed: dd_Smed_v6_11616_0_1, dd_Smed_v6_11616_0_1, [RH, Score=284, Expect=8e-95]} {RNA1509_13596, RNA1509_35765} {RNA1310_16060, RNA1509_13596, RNA1509_35765} {RNA1509_13596, RNA1509_35765, RNA815_8391}
9. MligTC455_15629 415 8.65 Mlig455_004619

Neo: Neoblast, stringent

Age: -

Region-enriched R5: 1.273/0.00412

Regeneration-upregulated R3: 2.136

Regeneration-enriched R3: 2.136

MCM2 1.754 - - - 0.965 0.789 - Mlig455_004619 {REF} {Length: 4217} {TRANSSPLICED} {Pfam: MCM P-loop domain [PF00493.25, score=330.2]; MCM OB domain [PF17207.5, score=130.7]; MCM AAA-lid domain [PF17855.3, score=109.4]; Mini-chromosome maintenance protein 2 [PF12619.10, score=55.8]; MCM N-terminal domain [PF14551.8, score=50.1]; Magnesium chelatase, subunit ChlI [PF01078.23, score=34.7]; AAA domain (dynein-related subfamily) [PF07728.16, score=18.6]} {Human: ENSG00000073111, MCM2, minichromosome maintenance complex component 2, [RH, Score=1056, Expect=0.0]} {Mouse: ENSMUSG00000002870, Mcm2, minichromosome maintenance complex component 2, [RH, Score=1046, Expect=0.0]} {Dmel: FBgn0014861, Mcm2, Minichromosome maintenance 2, [RH, Score=991, Expect=0.0]} {Celegans: WBGene00003154, mcm-2, Yeast MCM (Licensing factor) related, [RH, Score=895, Expect=0.0]} {Smed: dd_Smed_v6_7682_0_1, dd_Smed_v6_7682_0_1, [RH, Score=915, Expect=0.0]} {RNA1509_3101} {RNA1310_746.2} {RNA815_2497}
10. MligTC455_52895 2080 43.34 Mlig455_011175

Neo: Neoblast, stringent

Age: -

Region-enriched R5: 1.107/0.01204

1.744 - - - 0.781 - 0.963 Mlig455_011175 {REF} {Length: 5884} {Pfam: Nucleoporin FG repeat region [PF13634.8, score=101.6]} {Mouse: ENSMUSG00000001855, Nup214, nucleoporin 214, [Score=52.0, Expect=5e-06]} {Celegans: WBGene00003796, npp-10, Nuclear pore complex protein Nup98-Nup96 Nuclear pore complex protein Nup98 Nuclear pore complex protein Nup96, [Score=54.7, Expect=4e-07]} {RNA1509_11924, RNA1509_19727, RNA1509_20579, RNA1509_25429, RNA1509_36479, RNA1509_42641, RNA1509_45545, RNA1509_47026, RNA1509_51564} {RNA1310_12555, RNA1509_11924, RNA1509_19727, RNA1509_20579, RNA1509_25429, RNA1509_36479, RNA1509_42641, RNA1509_45545, RNA1509_47026, RNA1509_51564} {RNA1509_11924, RNA1509_19727, RNA1509_20579, RNA1509_25429, RNA1509_36479, RNA1509_42641, RNA1509_45545, RNA1509_47026, RNA1509_51564, RNA815_2622}
11. MligTC455_47389 1959 40.8 Mlig455_012972

Neo: -

Age: -

SEC13 1.726 - - - - 0.768 0.958 Mlig455_012972 {REF} {Length: 1565} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=74.0]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=30.7]} {Human: ENSG00000157020, SEC13, SEC13 homolog, nuclear pore and COPII coat complex component, [RH, Score=386, Expect=2e-134]} {Mouse: ENSMUSG00000030298, Sec13, SEC13 homolog, nuclear pore and COPII coat complex component, [RH, Score=385, Expect=2e-134]} {Dmel: FBgn0024509, Sec13, Secretory 13, [RH, Score=332, Expect=4e-113]} {Celegans: WBGene00003806, npp-20, Protein SEC13 homolog, [RH, Score=246, Expect=5e-80]} {Smed: dd_Smed_v6_836_0_1, dd_Smed_v6_836_0_1, [RH, Score=315, Expect=4e-107]} {RNA1509_10731, RNA1509_19689, RNA1509_32561, RNA1509_40360, RNA1509_49501, RNA1509_52881, RNA1509_6799} {RNA1310_20303, RNA1509_10731, RNA1509_19689, RNA1509_32561, RNA1509_40360, RNA1509_49501, RNA1509_52881, RNA1509_6799} {RNA1509_10731, RNA1509_19689, RNA1509_32561, RNA1509_40360, RNA1509_49501, RNA1509_52881, RNA1509_6799, RNA815_8231}
12. MligTC455_39016 998 20.79 Mlig455_033396

Neo: Int S/G2/M

Age: -

Region-enriched R5: 1.243/0.00353
Region-enriched R4: 1.233/0.01964

TCEA2 1.688 - - 0.738 - - 0.950 Mlig455_033396 {REF} {Length: 1574} {Pfam: Transcription factor S-II (TFIIS), central domain [PF07500.16, score=114.4]; Transcription factor S-II (TFIIS) [PF01096.20, score=70.2]; TFIIS helical bundle-like domain [PF08711.13, score=33.7]} {Human: ENSG00000171703, TCEA2, transcription elongation factor A2, [RH, Score=258, Expect=1e-84]; ENSG00000187735, TCEA1, transcription elongation factor A1, [RH, Score=252, Expect=2e-82]} {Mouse: ENSMUSG00000033813, Tcea1, transcription elongation factor A (SII) 1, [RH, Score=247, Expect=2e-80]; ENSMUSG00000059540, Tcea2, transcription elongation factor A (SII), 2, [RH, Score=246, Expect=5e-80]; ENSMUSG00000001604, Tcea3, transcription elongation factor A (SII), 3, [RH, Score=240, Expect=3e-77]} {Dmel: FBgn0010422, TfIIS, RNA polymerase II elongation factor, [RH, Score=245, Expect=8e-80]} {Celegans: WBGene00012000, T24H10.1, Putative transcription elongation factor S-II, [RH, Score=212, Expect=6e-67]} {Smed: dd_Smed_v6_3176_0_1, dd_Smed_v6_3176_0_1, [RH, Score=253, Expect=4e-83]} {RNA1509_7459} {RNA1310_7696, RNA1509_7459} {RNA1509_7459, RNA815_8604}
13. MligTC455_53953 1355 28.23 Mlig455_034731

Neo: Int S/G2/M

Age: logFC(26M/2M)=0.235

Region-enriched R4: 1.589/0.02363

GLUD1 1.677 0.721 - - 0.956 - - Mlig455_034731 {REF} {Length: 2660} {Pfam: Glu/Leu/Phe/Val dehydrogenase, dimerisation domain [PF02812.20, score=194.2]; Glutamate/Leucine/Phenylalanine/Valine dehydrogenase [PF00208.23, score=169.3]} {Human: ENSG00000148672, GLUD1, glutamate dehydrogenase 1, [RH, Score=777, Expect=0.0]; ENSG00000182890, GLUD2, glutamate dehydrogenase 2, [RH, Score=765, Expect=0.0]} {Mouse: ENSMUSG00000021794, Glud1, glutamate dehydrogenase 1, [RH, Score=781, Expect=0.0]} {Dmel: FBgn0001098, Gdh, Glutamate dehydrogenase, [RH, Score=746, Expect=0.0]} {Celegans: WBGene00014095, gdh-1, Glutamate dehydrogenase, [RH, Score=640, Expect=0.0]} {Smed: dd_Smed_v6_932_0_1, dd_Smed_v6_932_0_1, [RH, Score=715, Expect=0.0]} {RNA1509_10612, RNA1509_40304} {RNA1310_5462.1, RNA1509_10612, RNA1509_40304} {RNA1509_10612, RNA1509_40304, RNA815_2103.2}
14. MligTC455_36832 6263 130.48 Mlig455_051664

Neo: -

Age: -

0.97 - - - - - 0.970 Mlig455_051664 {REF} {Length: 686} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_35203, RNA1509_3775} {RNA1310_48900, RNA1509_35203, RNA1509_3775} {RNA1509_35203, RNA1509_3775, RNA815_26209}
15. MligTC455_25594 546 11.38 Mlig455_010729

Neo: -

Age: -

0.964 - - - 0.964 - - Mlig455_010729 {REF} {Length: 6514} {TRANSSPLICED} {RNA1509_4078} {RNA1310_3072, RNA1509_4078} {RNA1509_4078, RNA815_5186}
16. MligTC455_49069 3685 76.77 Mlig455_070251

Neo: -

Age: logFC(26M/2M)=0.212

Region-enriched R4: 1.746/0.00071

CS 0.963 - - - 0.963 - - Mlig455_070251 {REF} {Length: 2221} {TRANSSPLICED} {Pfam: Citrate synthase, C-terminal domain [PF00285.23, score=347.7]} {Human: ENSG00000062485, CS, citrate synthase, [RH, Score=701, Expect=0.0]} {Mouse: ENSMUSG00000005683, Cs, citrate synthase, [RH, Score=699, Expect=0.0]; ENSMUSG00000046934, Csl, citrate synthase like, [RH, Score=687, Expect=0.0]} {Dmel: FBgn0261955, kdn, knockdown, [RH, Score=694, Expect=0.0]} {Celegans: WBGene00000833, cts-1, Probable citrate synthase, mitochondrial, [RH, Score=641, Expect=0.0]} {Smed: dd_Smed_v6_335_0_1, dd_Smed_v6_335_0_1, [RH, Score=706, Expect=0.0]} {RNA1509_762} {RNA1310_11494.1} {RNA815_3764.1}
17. MligTC455_24174 2310 48.14 Mlig455_000738

Neo: -

Age: logFC(26M/2M)=0.412

Region-enriched R4: 1.066/0.04245

PC 0.956 - - - 0.956 - - Mlig455_000738 {REF} {Length: 5201} {TRANSSPLICED} {Pfam: Carbamoyl-phosphate synthase L chain, ATP binding domain [PF02786.19, score=260.1]; Conserved carboxylase domain [PF02436.20, score=226.0]; Biotin carboxylase, N-terminal domain [PF00289.24, score=143.2]; Biotin carboxylase C-terminal domain [PF02785.21, score=108.1]; HMGL-like [PF00682.21, score=88.9]; Biotin-requiring enzyme [PF00364.24, score=57.4]; D-ala D-ala ligase C-terminus [PF07478.15, score=30.6]; Biotin-lipoyl like [PF13533.8, score=26.0]; ATP-grasp domain [PF02222.24, score=23.4]; Na(+)-translocating NADH-quinone reductase subunit A (NQRA) [PF05896.13, score=22.4]; HlyD family secretion protein [PF13437.8, score=19.7]} {Human: ENSG00000173599, PC, pyruvate carboxylase, [RH, Score=1478, Expect=0.0]} {Mouse: ENSMUSG00000024892, Pcx, pyruvate carboxylase, [RH, Score=1469, Expect=0.0]} {Dmel: FBgn0027580, PCB, Pyruvate carboxylase, [RH, Score=1523, Expect=0.0]} {Celegans: WBGene00004258, pyc-1, Pyruvate carboxylase 1, [RH, Score=1472, Expect=0.0]} {Smed: dd_Smed_v6_2393_0_1, dd_Smed_v6_2393_0_1, [RH, Score=1543, Expect=0.0]} {RNA1509_10197, RNA1509_29223, RNA1509_39676, RNA1509_886} {RNA1310_1189, RNA1509_10197, RNA1509_29223, RNA1509_39676} {RNA1509_10197, RNA1509_29223, RNA1509_39676, RNA815_728}
18. MligTC455_32459 510 10.62 Mlig455_012973

Neo: -

Age: -

0.954 - - - - - 0.954 Mlig455_012973 {REF} {Length: 2586} {RNA1310_38015.1} {RNA815_33513}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA