M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_34170

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_34170 10446 217.63 Mlig455_009330

Neo: Int S/G2/M

Age: logFC(26M/2M)=0.604

 RACK1 Mlig455_009330 {REF} {Length: 1275} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=161.9]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=46.0]; Nucleoporin Nup120/160 [PF11715.10, score=32.7]; WD40 region of Ge1, enhancer of mRNA-decapping protein [PF16529.7, score=23.1]; Eukaryotic translation initiation factor eIF2A [PF08662.13, score=21.3]; Cytochrome D1 heme domain [PF02239.18, score=18.9]; Protein of unknown function (DUF1513) [PF07433.13, score=18.9]} {Human: ENSG00000204628, RACK1, receptor for activated C kinase 1, [Score=510, Expect=0.0]} {Mouse: ENSMUSG00000020372, Rack1, receptor for activated C kinase 1, [Score=510, Expect=0.0]} {Dmel: FBgn0020618, Rack1, Receptor of activated protein kinase C 1, [RH, Score=461, Expect=1e-164]} {Celegans: WBGene00010556, rack-1, Guanine nucleotide-binding protein subunit beta-2-like 1, [RH, Score=434, Expect=7e-154]} {Smed: dd_Smed_v6_174_0_1, dd_Smed_v6_174_0_1, [RH, Score=485, Expect=2e-174]} {RNA1509_3363, RNA1509_3716, RNA1509_4123, RNA1509_4273, RNA1509_454} {RNA1310_23103.1, RNA1509_3363, RNA1509_3716, RNA1509_4123, RNA1509_4273} {RNA1509_3363, RNA1509_3716, RNA1509_4123, RNA1509_4273, RNA815_9604}

Cumulative graph for MligTC455_34170

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.399 7.859 0.25884 0.90698
RegionR2 0.536 7.859 0.01571 0.13258
RegionR3 0.453 7.859 0.01344 0.18480
RegionR4 -1.009 7.859 0.00000 0.00009
RegionR5 -0.104 7.859 0.55192 0.91286
RegionR6 0.216 7.859 0.23396 0.81766
RegionR7 0.295 7.859 0.11399 0.64008
RegionR8 0.011 7.859 0.96151 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.033 7.859 0.95118 1.00000
RegenerationR2 -0.208 7.859 0.36474 0.79178
RegenerationR3 -0.087 7.859 0.71931 0.95404
RegenerationR4 0.186 7.859 0.44385 0.83899
RegenerationR5 0.226 7.859 0.32767 0.75028
RegenerationR6 -0.158 7.859 0.50756 0.81164
RegenerationBL 0.031 7.859 0.89170 1.00000
RegenerationTP -0.321 7.859 0.20831 0.65024


Genes with expression patterns similar to MligTC455_34170

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_34170 10446 217.63 Mlig455_009330

Neo: Int S/G2/M

Age: logFC(26M/2M)=0.604

 RACK1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_009330 {REF} {Length: 1275} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=161.9]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=46.0]; Nucleoporin Nup120/160 [PF11715.10, score=32.7]; WD40 region of Ge1, enhancer of mRNA-decapping protein [PF16529.7, score=23.1]; Eukaryotic translation initiation factor eIF2A [PF08662.13, score=21.3]; Cytochrome D1 heme domain [PF02239.18, score=18.9]; Protein of unknown function (DUF1513) [PF07433.13, score=18.9]} {Human: ENSG00000204628, RACK1, receptor for activated C kinase 1, [Score=510, Expect=0.0]} {Mouse: ENSMUSG00000020372, Rack1, receptor for activated C kinase 1, [Score=510, Expect=0.0]} {Dmel: FBgn0020618, Rack1, Receptor of activated protein kinase C 1, [RH, Score=461, Expect=1e-164]} {Celegans: WBGene00010556, rack-1, Guanine nucleotide-binding protein subunit beta-2-like 1, [RH, Score=434, Expect=7e-154]} {Smed: dd_Smed_v6_174_0_1, dd_Smed_v6_174_0_1, [RH, Score=485, Expect=2e-174]} {RNA1509_3363, RNA1509_3716, RNA1509_4123, RNA1509_4273, RNA1509_454} {RNA1310_23103.1, RNA1509_3363, RNA1509_3716, RNA1509_4123, RNA1509_4273} {RNA1509_3363, RNA1509_3716, RNA1509_4123, RNA1509_4273, RNA815_9604}
2. MligTC455_42383 1588 33.09 Mlig455_003099

Neo: -

Age: logFC(26M/2M)=0.445

Region-enriched R5: 1.036/0.00002

 PSPH 0.972 - - - - 0.972 - Mlig455_003099 {REF} {Length: 1526} {TRANSSPLICED} {Pfam: haloacid dehalogenase-like hydrolase [PF00702.28, score=44.0]; haloacid dehalogenase-like hydrolase [PF12710.9, score=40.4]; Pyrimidine 5'-nucleotidase (UMPH-1) [PF05822.14, score=21.2]} {Human: ENSG00000146733, PSPH, phosphoserine phosphatase, [RH, Score=193, Expect=2e-61]} {Mouse: ENSMUSG00000029446, Psph, phosphoserine phosphatase, [RH, Score=187, Expect=2e-59]} {Dmel: FBgn0023129, aay, astray, [RH, Score=172, Expect=4e-53]} {Celegans: WBGene00013379, Y62E10A.13, [RH, Score=186, Expect=3e-58]} {Smed: dd_Smed_v6_11185_0_1, dd_Smed_v6_11185_0_1, [RH, Score=176, Expect=2e-55]} {RNA1509_52079, RNA1509_6749} {RNA1310_21602, RNA1509_52079} {RNA1509_52079, RNA815_9131}
3. MligTC455_29006 7971 166.06 Mlig455_062319, Mlig455_062326

Neo: -

Age: logFC(26M/2M)=0.258

Region-enriched R5: 1.004/0.00025

 SSR1 0.958 - - - - 0.958 -

Mlig455_062319 {REF} {Length: 2605} {Pfam: Translocon-associated protein (TRAP), alpha subunit [PF03896.18, score=181.4]} {Human: ENSG00000124783, SSR1, signal sequence receptor subunit 1, [RH, Score=114, Expect=1e-28]} {Mouse: ENSMUSG00000021427, Ssr1, signal sequence receptor, alpha, [RH, Score=105, Expect=8e-26]} {Dmel: FBgn0028327, l(1)G0320, lethal (1) G0320, [RH, Score=144, Expect=5e-40]} {Celegans: WBGene00022122, trap-1, TRanslocon-Associated Protein, [Score=115, Expect=4e-30]} {Smed: dd_Smed_v6_1657_0_1, dd_Smed_v6_1657_0_1, [RH, Score=124, Expect=2e-32]} {RNA1509_6343} {RNA1310_2397.1} {RNA815_1244.1}

Mlig455_062326 {REF} {Length: 2319} {Pfam: Translocon-associated protein (TRAP), alpha subunit [PF03896.18, score=181.4]} {Human: ENSG00000124783, SSR1, signal sequence receptor subunit 1, [RH, Score=114, Expect=1e-28]} {Mouse: ENSMUSG00000021427, Ssr1, signal sequence receptor, alpha, [RH, Score=105, Expect=8e-26]} {Dmel: FBgn0028327, l(1)G0320, lethal (1) G0320, [RH, Score=144, Expect=5e-40]} {Celegans: WBGene00022122, trap-1, TRanslocon-Associated Protein, [Score=115, Expect=4e-30]} {Smed: dd_Smed_v6_1657_0_1, dd_Smed_v6_1657_0_1, [RH, Score=124, Expect=2e-32]} {RNA1509_6343} {RNA1310_2397.1} {RNA815_1244.1}
4. MligTC455_29047 4133 86.1 Mlig455_068907

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.690

Region-enriched R5: 1.010/0.00015

 SSR1 0.956 - - - - 0.956 - Mlig455_068907 {REF} {Length: 2177} {Pfam: Translocon-associated protein (TRAP), alpha subunit [PF03896.18, score=187.5]} {Human: ENSG00000124783, SSR1, signal sequence receptor subunit 1, [RH, Score=113, Expect=9e-29]} {Mouse: ENSMUSG00000021427, Ssr1, signal sequence receptor, alpha, [RH, Score=105, Expect=6e-26]} {Dmel: FBgn0028327, l(1)G0320, lethal (1) G0320, [RH, Score=145, Expect=4e-41]} {Celegans: WBGene00022122, trap-1, TRanslocon-Associated Protein, [RH, Score=122, Expect=1e-32]} {Smed: dd_Smed_v6_1657_0_1, dd_Smed_v6_1657_0_1, [RH, Score=126, Expect=9e-34]} {RNA1509_11028, RNA1509_1376} {RNA1310_2397.1, RNA1509_11028} {RNA1509_11028, RNA815_1244.1}
5. MligTC455_53023 2576 53.66 Mlig455_042203

Neo: -

Age: Down-Up-Up

 ATP6V1E1 0.956 - - - - 0.956 - Mlig455_042203 {REF} {Length: 2131} {TRANSSPLICED} {Pfam: ATP synthase (E/31 kDa) subunit [PF01991.20, score=219.4]} {Human: ENSG00000131100, ATP6V1E1, ATPase H+ transporting V1 subunit E1, [RH, Score=256, Expect=3e-86]} {Mouse: ENSMUSG00000019210, Atp6v1e1, ATPase, H+ transporting, lysosomal V1 subunit E1, [RH, Score=257, Expect=7e-87]} {Dmel: FBgn0283535, Vha26, Vacuolar H[+]-ATPase 26kD subunit, [RH, Score=268, Expect=4e-91]} {Celegans: WBGene00006917, vha-8, Vacuolar H ATPase, [RH, Score=257, Expect=7e-87]} {Smed: dd_Smed_v6_1369_0_1, dd_Smed_v6_1369_0_1, [RH, Score=228, Expect=2e-75]} {RNA1509_1198, RNA1509_12357} {RNA1310_32674, RNA1509_12357} {RNA1509_12357, RNA815_15271}
6. MligTC455_49117 493 10.27 Mlig455_033530

Neo: Int S/G2/M

Age: -

Region-enriched R5: 1.636/0.00055

 MCMBP 0.955 - - - - 0.955 - Mlig455_033530 {REF} {Length: 3039} {TRANSSPLICED} {Pfam: Mini-chromosome maintenance replisome factor [PF09739.11, score=314.8]} {Human: ENSG00000197771, MCMBP, minichromosome maintenance complex binding protein, [RH, Score=201, Expect=3e-55]} {Mouse: ENSMUSG00000048170, Mcmbp, minichromosome maintenance complex binding protein, [RH, Score=200, Expect=2e-55]} {Dmel: FBgn0031875, CG3430, [RH, Score=188, Expect=2e-51]} {RNA1509_12390, RNA1509_33175, RNA1509_57235} {RNA1310_5415, RNA1509_12390, RNA1509_33175, RNA1509_57235} {RNA1509_12390, RNA1509_33175, RNA1509_57235, RNA815_3040}
7. MligTC455_33736 411 8.56 Mlig455_052584

Neo: -

Age: -

Region-enriched R4: 1.761/0.01390

 NCAPH 0.954 - - - - 0.954 - Mlig455_052584 {REF} {Length: 3065} {Pfam: Condensin complex subunit 2 [PF05786.16, score=100.6]} {Human: ENSG00000121152, NCAPH, non-SMC condensin I complex subunit H, [RH, Score=79.3, Expect=1e-16]} {Mouse: ENSMUSG00000034906, Ncaph, non-SMC condensin I complex, subunit H, [Score=84.0, Expect=1e-16]} {Smed: dd_Smed_v6_8491_0_3, dd_Smed_v6_8491_0_3, [Score=66.2, Expect=2e-11]} {RNA1509_16625} {RNA1310_5603.1} {RNA815_11680}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA