Data search
Results for MligTC455_34275
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_34275 | 47 | 0.98 | Mlig455_013441, Mlig455_053694 | Neo: - Age: - |
Mlig455_013441 {REF} {Length: 1006} Mlig455_053694 {REF} {Length: 2436} {RNA1509_11491} {RNA1310_120456} {RNA815_21934} |
Cumulative graph for MligTC455_34275
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -0.543 | 1.191 | 0.99998 | 1.00000 | |
| RegionR2 | -0.132 | 1.191 | 0.99991 | 1.00000 | |
| RegionR3 | 0.388 | 1.191 | 1.00000 | 1.00000 | |
| RegionR4 | -0.047 | 1.191 | 0.99995 | 1.00000 | |
| RegionR5 | 0.331 | 1.191 | 0.99999 | 1.00000 | |
| RegionR6 | -0.032 | 1.191 | 0.99998 | 1.00000 | |
| RegionR7 | -0.056 | 1.191 | 0.99999 | 1.00000 | |
| RegionR8 | 0.091 | 1.191 | 0.99997 | 1.00000 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | -0.502 | 1.191 | 1.00000 | 1.00000 | |
| RegenerationR2 | 4.092 | 1.191 | 0.00337 | 0.08908 | |
| RegenerationR3 | 4.012 | 1.191 | 0.03081 | 0.31404 | |
| RegenerationR4 | 2.274 | 1.191 | 0.10907 | 0.50777 | |
| RegenerationR5 | 2.811 | 1.191 | 0.05785 | 0.38360 | |
| RegenerationR6 | 4.373 | 1.191 | 0.01917 | 0.17084 | |
| RegenerationBL | 4.943 | 1.191 | 0.01079 | 0.10510 | |
| RegenerationTP | 3.657 | 1.191 | 0.20033 | 0.64095 |
Genes with expression patterns similar to MligTC455_34275
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_34275 | 47 | 0.98 | Mlig455_013441, Mlig455_053694 | Neo: - Age: - |
3 | - | - | - | 1.000 | 1.000 | 1.000 | Mlig455_013441 {REF} {Length: 1006} Mlig455_053694 {REF} {Length: 2436} {RNA1509_11491} {RNA1310_120456} {RNA815_21934} |
|
| 2. | MligTC455_18064 | 59 | 1.22 | Mlig455_002949 | Neo: - Age: - |
RIMS2 | 0.977 | - | - | - | - | - | 0.977 | Mlig455_002949 {REF} {Length: 6042} {Pfam: C2 domain [PF00168.32, score=57.7]} {Human: ENSG00000176406, RIMS2, regulating synaptic membrane exocytosis 2, [RH, Score=233, Expect=4e-65]; ENSG00000079841, RIMS1, regulating synaptic membrane exocytosis 1, [RH, Score=232, Expect=1e-67]} {Mouse: ENSMUSG00000111628, Rims1, regulating synaptic membrane exocytosis 1, [RH, Score=233, Expect=3e-67]; ENSMUSG00000041670, Rims1, regulating synaptic membrane exocytosis 1, [RH, Score=233, Expect=3e-67]; ENSMUSG00000037386, Rims2, regulating synaptic membrane exocytosis 2, [RH, Score=227, Expect=2e-69]} {Dmel: FBgn0053547, Rim, Rab3 interacting molecule, [RH, Score=241, Expect=6e-68]} {Celegans: WBGene00006750, unc-10, Rab-3-interacting molecule unc-10, [RH, Score=183, Expect=1e-48]} {Smed: dd_Smed_v6_10734_0_1, dd_Smed_v6_10734_0_1, [Score=271, Expect=1e-80]} {RNA1509_38623} {RNA1310_16497, RNA1509_38623} {RNA1509_38623, RNA815_27168} |
| 3. | MligTC455_23074 | 38 | 0.79 | Mlig455_020751, Mlig455_036068 | Neo: Irradiation Age: Up-Down-Down |
0.959 | - | - | - | - | - | 0.959 | Mlig455_020751 {REF} {Length: 927} {NoTransDecoderORF} {RNA1509_53615} {RNA1310_53616} {RNA815_33827} Mlig455_036068 {REF} {Length: 1090} {NoTransDecoderORF} {RNA1509_53615} {RNA1310_77453} {RNA815_33827} |
|
| 4. | MligTC455_15724 | 24 | 0.5 | Mlig455_050249 | Neo: - Age: - |
CALM2 | 0.954 | - | - | - | - | - | 0.954 | Mlig455_050249 {REF} {Length: 728} {Pfam: EF hand [PF00036.34, score=128.2]; EF-hand domain pair [PF13499.8, score=111.2]; EF hand [PF13202.8, score=97.1]; EF-hand domain [PF13405.8, score=94.2]; EF-hand domain pair [PF13833.8, score=83.8]; EF-hand domain [PF14658.8, score=44.6]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=37.6]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=25.7]; Uncharacterised protein family (UPF0154) [PF03672.15, score=23.7]; Dockerin type I domain [PF00404.20, score=21.2]; Protein of unknown function (DUF3349) [PF11829.10, score=20.2]; Tellurite resistance protein TerB [PF05099.15, score=19.4]; Cache domain [PF08269.13, score=18.4]} {Human: ENSG00000143933, CALM2, calmodulin 2, [Score=174, Expect=5e-55]; ENSG00000198668, CALM1, calmodulin 1, [Score=172, Expect=4e-55]; ENSG00000160014, CALM3, calmodulin 3, [Score=170, Expect=5e-54]} {Mouse: ENSMUSG00000001175, Calm1, calmodulin 1, [Score=170, Expect=3e-54]; ENSMUSG00000036438, Calm2, calmodulin 2, [Score=170, Expect=3e-54]; ENSMUSG00000019370, Calm3, calmodulin 3, [Score=170, Expect=3e-54]; ENSMUSG00000063130, Calml3, calmodulin-like 3, [Score=164, Expect=1e-51]} {Dmel: FBgn0000253, Cam, Calmodulin, [Score=169, Expect=4e-54]} {Celegans: WBGene00000552, cmd-1, Calmodulin, [Score=169, Expect=3e-54]} {Smed: dd_Smed_v6_255_0_1, dd_Smed_v6_255_0_1, [Score=169, Expect=2e-54]} {RNA1310_49559} {RNA815_36071} |
Berezikov Lab - 2020-2021 © ERIBA