TomoSeq data search

Data search

Results for MligTC455_34602

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_34602	49	1.01	Mlig455_038336, Mlig455_068281	Neo: Irradiation Age: -	DDX4	Mlig455_038336 {REF} {Length: 4440} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=157.0]; Helicase conserved C-terminal domain [PF00271.33, score=91.4]; Zinc knuckle [PF00098.25, score=45.7]; Type III restriction enzyme, res subunit [PF04851.17, score=19.0]} {Human: ENSG00000152670, DDX4, DEAD-box helicase 4, [Score=393, Expect=3e-123]} {Mouse: ENSMUSG00000021758, Ddx4, DEAD (Asp-Glu-Ala-Asp) box polypeptide 4, [Score=385, Expect=2e-120]} {Dmel: FBgn0263231, bel, belle, [Score=382, Expect=1e-118]} {Celegans: WBGene00001600, glh-3, ATP-dependent RNA helicase glh-3, [RH, Score=324, Expect=8e-98]} {Smed: dd_Smed_v6_1985_0_1, dd_Smed_v6_1985_0_1, [RH, Score=426, Expect=8e-134]} {RNA1509_6594} {RNA1310_12916} {RNA815_5319.1} Mlig455_068281 {REF} {Length: 354} {NoTransDecoderORF} {RNA1509_4874} {RNA1310_3224.1} {RNA815_9668.1}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_34602

1.01

Mlig455_038336, Mlig455_068281

Neo: Irradiation

Age: -

DDX4

Mlig455_038336 {REF} {Length: 4440} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=157.0]; Helicase conserved C-terminal domain [PF00271.33, score=91.4]; Zinc knuckle [PF00098.25, score=45.7]; Type III restriction enzyme, res subunit [PF04851.17, score=19.0]} {Human: ENSG00000152670, DDX4, DEAD-box helicase 4, [Score=393, Expect=3e-123]} {Mouse: ENSMUSG00000021758, Ddx4, DEAD (Asp-Glu-Ala-Asp) box polypeptide 4, [Score=385, Expect=2e-120]} {Dmel: FBgn0263231, bel, belle, [Score=382, Expect=1e-118]} {Celegans: WBGene00001600, glh-3, ATP-dependent RNA helicase glh-3, [RH, Score=324, Expect=8e-98]} {Smed: dd_Smed_v6_1985_0_1, dd_Smed_v6_1985_0_1, [RH, Score=426, Expect=8e-134]} {RNA1509_6594} {RNA1310_12916} {RNA815_5319.1}

Mlig455_068281 {REF} {Length: 354} {NoTransDecoderORF} {RNA1509_4874} {RNA1310_3224.1} {RNA815_9668.1}

Cumulative graph for MligTC455_34602

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	0.395	1.461	0.78959	1.00000
RegionR2	-0.726	1.461	0.97100	1.00000
RegionR3	0.47	1.461	0.59354	1.00000
RegionR4	1.16	1.461	0.23388	0.52786
RegionR5	1.297	1.461	0.14292	0.39034
RegionR6	1.095	1.461	0.28159	0.87158
RegionR7	0.565	1.461	0.61754	1.00000
RegionR8	-4.256	1.461	0.22553	0.83514

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-4.424	1.461	0.48820	1.00000
RegenerationR2	-0.591	1.461	0.62465	0.92479
RegenerationR3	0.123	1.461	0.89055	1.00000
RegenerationR4	-0.685	1.461	0.41785	0.82476
RegenerationR5	-1.042	1.461	0.15667	0.57805
RegenerationR6	-3.047	1.461	0.01296	0.14049
RegenerationBL	-0.487	1.461	0.89170	1.00000
RegenerationTP	-2.057	1.461	1.00000	1.00000

Genes with expression patterns similar to MligTC455_34602

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_34602	49	1.01	Mlig455_038336, Mlig455_068281	Neo: Irradiation Age: -	DDX4	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_038336 {REF} {Length: 4440} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=157.0]; Helicase conserved C-terminal domain [PF00271.33, score=91.4]; Zinc knuckle [PF00098.25, score=45.7]; Type III restriction enzyme, res subunit [PF04851.17, score=19.0]} {Human: ENSG00000152670, DDX4, DEAD-box helicase 4, [Score=393, Expect=3e-123]} {Mouse: ENSMUSG00000021758, Ddx4, DEAD (Asp-Glu-Ala-Asp) box polypeptide 4, [Score=385, Expect=2e-120]} {Dmel: FBgn0263231, bel, belle, [Score=382, Expect=1e-118]} {Celegans: WBGene00001600, glh-3, ATP-dependent RNA helicase glh-3, [RH, Score=324, Expect=8e-98]} {Smed: dd_Smed_v6_1985_0_1, dd_Smed_v6_1985_0_1, [RH, Score=426, Expect=8e-134]} {RNA1509_6594} {RNA1310_12916} {RNA815_5319.1} Mlig455_068281 {REF} {Length: 354} {NoTransDecoderORF} {RNA1509_4874} {RNA1310_3224.1} {RNA815_9668.1}
2.	MligTC455_10258	300	6.25	Mlig455_011379	Neo: Irradiation Age: Up-Down-Down Region-specific R4: 5.805		0.975	-	-	-	0.975	-	-	Mlig455_011379 {REF} {Length: 1917} {TRANSSPLICED} {RNA1509_26341, RNA1509_31056} {RNA1310_31240, RNA1509_26341} {RNA1509_26341, RNA815_16186}
3.	MligTC455_16982	46	0.95	Mlig455_053260	Neo: - Age: -		0.962	-	-	-	-	-	0.962	Mlig455_053260 {REF} {Length: 2046} {Pfam: Glycine rich protein [PF12810.9, score=32.2]} {RNA1310_53101} {RNA815_30313.1}
4.	MligTC455_48703	487	10.14	Mlig455_058751	Neo: - Age: -		0.961	-	-	-	-	0.961	-	Mlig455_058751 {REF} {Length: 1163} {TRANSSPLICED} {RNA1509_26267, RNA1509_35071} {RNA1310_13131, RNA1509_26267, RNA1509_35071} {RNA1509_26267, RNA1509_35071, RNA815_5954.1}