TomoSeq data search

Data search

Results for MligTC455_34809

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_34809	5736	119.51	Mlig455_002171, Mlig455_002270, Mlig455_002315	Neo: - Age: - Regeneration-downregulated BL: -1.591 Regeneration-depleted BL: -1.591	LAMP1	Mlig455_002171 {REF} {Length: 3049} {Pfam: Lysosome-associated membrane glycoprotein (Lamp) [PF01299.19, score=20.0]} {Human: ENSG00000185896, LAMP1, lysosomal associated membrane protein 1, [Score=59.3, Expect=4e-09]} {Mouse: ENSMUSG00000031447, Lamp1, lysosomal-associated membrane protein 1, [Score=74.7, Expect=2e-14]} {Dmel: FBgn0032949, Lamp1, [Score=66.2, Expect=6e-12]} {Smed: dd_Smed_v6_2131_0_1, dd_Smed_v6_2131_0_1, [Score=60.8, Expect=4e-10]} {RNA1509_3138} {RNA1310_10525} {RNA815_4717} Mlig455_002270 {REF} {Length: 3391} {Pfam: Lysosome-associated membrane glycoprotein (Lamp) [PF01299.19, score=44.3]} {Human: ENSG00000185896, LAMP1, lysosomal associated membrane protein 1, [Score=58.9, Expect=7e-09]} {Mouse: ENSMUSG00000031447, Lamp1, lysosomal-associated membrane protein 1, [Score=75.1, Expect=3e-14]} {Dmel: FBgn0032949, Lamp1, [Score=65.9, Expect=1e-11]} {Smed: dd_Smed_v6_2131_0_1, dd_Smed_v6_2131_0_1, [Score=58.9, Expect=2e-09]} {RNA1509_3138} {RNA1310_13297.1} {RNA815_4717} Mlig455_002315 {REF} {Length: 4119} {Pfam: Lysosome-associated membrane glycoprotein (Lamp) [PF01299.19, score=44.3]} {Human: ENSG00000185896, LAMP1, lysosomal associated membrane protein 1, [Score=59.3, Expect=5e-09]} {Mouse: ENSMUSG00000031447, Lamp1, lysosomal-associated membrane protein 1, [Score=75.9, Expect=2e-14]} {Dmel: FBgn0032949, Lamp1, [Score=65.9, Expect=1e-11]} {Smed: dd_Smed_v6_2131_0_1, dd_Smed_v6_2131_0_1, [Score=60.5, Expect=9e-10]} {RNA1509_12269, RNA1509_14619, RNA1509_3138} {RNA1310_13297.1, RNA1509_12269, RNA1509_14619, RNA1509_3138} {RNA1509_12269, RNA1509_14619, RNA1509_3138, RNA815_4717}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_34809

5736

119.51

Mlig455_002171, Mlig455_002270, Mlig455_002315

Neo: -

Age: -

Regeneration-downregulated BL: -1.591

Regeneration-depleted BL: -1.591

LAMP1

Mlig455_002171 {REF} {Length: 3049} {Pfam: Lysosome-associated membrane glycoprotein (Lamp) [PF01299.19, score=20.0]} {Human: ENSG00000185896, LAMP1, lysosomal associated membrane protein 1, [Score=59.3, Expect=4e-09]} {Mouse: ENSMUSG00000031447, Lamp1, lysosomal-associated membrane protein 1, [Score=74.7, Expect=2e-14]} {Dmel: FBgn0032949, Lamp1, [Score=66.2, Expect=6e-12]} {Smed: dd_Smed_v6_2131_0_1, dd_Smed_v6_2131_0_1, [Score=60.8, Expect=4e-10]} {RNA1509_3138} {RNA1310_10525} {RNA815_4717}

Mlig455_002270 {REF} {Length: 3391} {Pfam: Lysosome-associated membrane glycoprotein (Lamp) [PF01299.19, score=44.3]} {Human: ENSG00000185896, LAMP1, lysosomal associated membrane protein 1, [Score=58.9, Expect=7e-09]} {Mouse: ENSMUSG00000031447, Lamp1, lysosomal-associated membrane protein 1, [Score=75.1, Expect=3e-14]} {Dmel: FBgn0032949, Lamp1, [Score=65.9, Expect=1e-11]} {Smed: dd_Smed_v6_2131_0_1, dd_Smed_v6_2131_0_1, [Score=58.9, Expect=2e-09]} {RNA1509_3138} {RNA1310_13297.1} {RNA815_4717}

Mlig455_002315 {REF} {Length: 4119} {Pfam: Lysosome-associated membrane glycoprotein (Lamp) [PF01299.19, score=44.3]} {Human: ENSG00000185896, LAMP1, lysosomal associated membrane protein 1, [Score=59.3, Expect=5e-09]} {Mouse: ENSMUSG00000031447, Lamp1, lysosomal-associated membrane protein 1, [Score=75.9, Expect=2e-14]} {Dmel: FBgn0032949, Lamp1, [Score=65.9, Expect=1e-11]} {Smed: dd_Smed_v6_2131_0_1, dd_Smed_v6_2131_0_1, [Score=60.5, Expect=9e-10]} {RNA1509_12269, RNA1509_14619, RNA1509_3138} {RNA1310_13297.1, RNA1509_12269, RNA1509_14619, RNA1509_3138} {RNA1509_12269, RNA1509_14619, RNA1509_3138, RNA815_4717}

Cumulative graph for MligTC455_34809

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-0.865	7.042	0.05333	0.54068
RegionR2	-0.067	7.042	0.79360	1.00000
RegionR3	0.049	7.042	0.82472	1.00000
RegionR4	0.629	7.042	0.01342	0.07586
RegionR5	0.139	7.042	0.51269	0.87586
RegionR6	0.189	7.042	0.38659	0.96345
RegionR7	0.441	7.042	0.05033	0.43142
RegionR8	-0.516	7.042	0.07314	0.51702

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-1.038	7.042	0.14148	0.87928
RegenerationR2	-0.604	7.042	0.02206	0.24436
RegenerationR3	-0.436	7.042	0.11038	0.52330
RegenerationR4	-0.579	7.042	0.04061	0.32474
RegenerationR5	-0.208	7.042	0.43666	0.82249
RegenerationR6	-0.569	7.042	0.03931	0.24781
RegenerationBL	-1.591	7.042	0.00000	0.00002	Specific for BL: -1.591
RegenerationTP	0.162	7.042	0.55845	0.93773

Genes with expression patterns similar to MligTC455_34809

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_34809	5736	119.51	Mlig455_002171, Mlig455_002270, Mlig455_002315	Neo: - Age: - Regeneration-downregulated BL: -1.591 Regeneration-depleted BL: -1.591	LAMP1	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_002171 {REF} {Length: 3049} {Pfam: Lysosome-associated membrane glycoprotein (Lamp) [PF01299.19, score=20.0]} {Human: ENSG00000185896, LAMP1, lysosomal associated membrane protein 1, [Score=59.3, Expect=4e-09]} {Mouse: ENSMUSG00000031447, Lamp1, lysosomal-associated membrane protein 1, [Score=74.7, Expect=2e-14]} {Dmel: FBgn0032949, Lamp1, [Score=66.2, Expect=6e-12]} {Smed: dd_Smed_v6_2131_0_1, dd_Smed_v6_2131_0_1, [Score=60.8, Expect=4e-10]} {RNA1509_3138} {RNA1310_10525} {RNA815_4717} Mlig455_002270 {REF} {Length: 3391} {Pfam: Lysosome-associated membrane glycoprotein (Lamp) [PF01299.19, score=44.3]} {Human: ENSG00000185896, LAMP1, lysosomal associated membrane protein 1, [Score=58.9, Expect=7e-09]} {Mouse: ENSMUSG00000031447, Lamp1, lysosomal-associated membrane protein 1, [Score=75.1, Expect=3e-14]} {Dmel: FBgn0032949, Lamp1, [Score=65.9, Expect=1e-11]} {Smed: dd_Smed_v6_2131_0_1, dd_Smed_v6_2131_0_1, [Score=58.9, Expect=2e-09]} {RNA1509_3138} {RNA1310_13297.1} {RNA815_4717} Mlig455_002315 {REF} {Length: 4119} {Pfam: Lysosome-associated membrane glycoprotein (Lamp) [PF01299.19, score=44.3]} {Human: ENSG00000185896, LAMP1, lysosomal associated membrane protein 1, [Score=59.3, Expect=5e-09]} {Mouse: ENSMUSG00000031447, Lamp1, lysosomal-associated membrane protein 1, [Score=75.9, Expect=2e-14]} {Dmel: FBgn0032949, Lamp1, [Score=65.9, Expect=1e-11]} {Smed: dd_Smed_v6_2131_0_1, dd_Smed_v6_2131_0_1, [Score=60.5, Expect=9e-10]} {RNA1509_12269, RNA1509_14619, RNA1509_3138} {RNA1310_13297.1, RNA1509_12269, RNA1509_14619, RNA1509_3138} {RNA1509_12269, RNA1509_14619, RNA1509_3138, RNA815_4717}
2.	MligTC455_32679	1614	33.61	Mlig455_029162, Mlig455_030252	Neo: - Age: -	SRGAP1	0.952	-	-	-	0.952	-	-	Mlig455_029162 {REF} {Length: 4454} {Pfam: RhoGAP domain [PF00620.29, score=99.0]; SH3 domain [PF00018.30, score=48.4]; Variant SH3 domain [PF14604.8, score=40.4]; Fes/CIP4, and EFC/F-BAR homology domain [PF00611.25, score=37.8]; Variant SH3 domain [PF07653.19, score=23.7]} {Human: ENSG00000196935, SRGAP1, SLIT-ROBO Rho GTPase activating protein 1, [Score=410, Expect=5e-126]; ENSG00000196220, SRGAP3, SLIT-ROBO Rho GTPase activating protein 3, [Score=403, Expect=4e-123]; ENSG00000266028, SRGAP2, SLIT-ROBO Rho GTPase activating protein 2, [Score=400, Expect=4e-122]} {Mouse: ENSMUSG00000030257, Srgap3, SLIT-ROBO Rho GTPase activating protein 3, [Score=403, Expect=2e-123]; ENSMUSG00000020121, Srgap1, SLIT-ROBO Rho GTPase activating protein 1, [Score=401, Expect=1e-122]; ENSMUSG00000026425, Srgap2, SLIT-ROBO Rho GTPase activating protein 2, [Score=395, Expect=2e-120]} {Dmel: FBgn0263456, nwk, nervous wreck, [RH, Score=57.8, Expect=5e-08]} {Celegans: WBGene00006406, srgp-1, Slit-Robo GAP homolog, [Score=297, Expect=3e-85]} {Smed: dd_Smed_v6_5482_0_1, dd_Smed_v6_5482_0_1, [Score=343, Expect=2e-101]} {RNA1509_4307} {RNA1310_1568.1} {RNA815_447.1} Mlig455_030252 {REF} {Length: 5474} {Pfam: RhoGAP domain [PF00620.29, score=135.9]; SH3 domain [PF00018.30, score=48.1]; Variant SH3 domain [PF14604.8, score=40.0]; Fes/CIP4, and EFC/F-BAR homology domain [PF00611.25, score=37.6]; Variant SH3 domain [PF07653.19, score=23.3]} {Human: ENSG00000196935, SRGAP1, SLIT-ROBO Rho GTPase activating protein 1, [RH, Score=450, Expect=2e-139]; ENSG00000266028, SRGAP2, SLIT-ROBO Rho GTPase activating protein 2, [RH, Score=443, Expect=6e-137]; ENSG00000196220, SRGAP3, SLIT-ROBO Rho GTPase activating protein 3, [RH, Score=436, Expect=5e-134]} {Mouse: ENSMUSG00000020121, Srgap1, SLIT-ROBO Rho GTPase activating protein 1, [RH, Score=441, Expect=4e-136]; ENSMUSG00000026425, Srgap2, SLIT-ROBO Rho GTPase activating protein 2, [RH, Score=437, Expect=5e-135]; ENSMUSG00000030257, Srgap3, SLIT-ROBO Rho GTPase activating protein 3, [RH, Score=433, Expect=3e-133]} {Dmel: FBgn0036257, RhoGAP68F, Rho GTPase activating protein at 68F, [Score=75.1, Expect=1e-13]} {Celegans: WBGene00006406, srgp-1, Slit-Robo GAP homolog, [RH, Score=333, Expect=3e-97]} {Smed: dd_Smed_v6_5482_0_1, dd_Smed_v6_5482_0_1, [RH, Score=370, Expect=3e-110]} {RNA1509_4307, RNA1509_55991} {RNA1310_1568.1, RNA1509_55991} {RNA1509_55991, RNA815_447.1}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Σ Spearman correlations

Int1

Int2

Int3

Reg1

Reg2

Reg3

Annotation

MligTC455_34809

5736

119.51

Mlig455_002171, Mlig455_002270, Mlig455_002315

Neo: -

Age: -

Regeneration-downregulated BL: -1.591

Regeneration-depleted BL: -1.591

LAMP1

1.000

MligTC455_32679

1614

33.61

Mlig455_029162, Mlig455_030252

Neo: -

Age: -

SRGAP1

0.952

Mlig455_029162 {REF} {Length: 4454} {Pfam: RhoGAP domain [PF00620.29, score=99.0]; SH3 domain [PF00018.30, score=48.4]; Variant SH3 domain [PF14604.8, score=40.4]; Fes/CIP4, and EFC/F-BAR homology domain [PF00611.25, score=37.8]; Variant SH3 domain [PF07653.19, score=23.7]} {Human: ENSG00000196935, SRGAP1, SLIT-ROBO Rho GTPase activating protein 1, [Score=410, Expect=5e-126]; ENSG00000196220, SRGAP3, SLIT-ROBO Rho GTPase activating protein 3, [Score=403, Expect=4e-123]; ENSG00000266028, SRGAP2, SLIT-ROBO Rho GTPase activating protein 2, [Score=400, Expect=4e-122]} {Mouse: ENSMUSG00000030257, Srgap3, SLIT-ROBO Rho GTPase activating protein 3, [Score=403, Expect=2e-123]; ENSMUSG00000020121, Srgap1, SLIT-ROBO Rho GTPase activating protein 1, [Score=401, Expect=1e-122]; ENSMUSG00000026425, Srgap2, SLIT-ROBO Rho GTPase activating protein 2, [Score=395, Expect=2e-120]} {Dmel: FBgn0263456, nwk, nervous wreck, [RH, Score=57.8, Expect=5e-08]} {Celegans: WBGene00006406, srgp-1, Slit-Robo GAP homolog, [Score=297, Expect=3e-85]} {Smed: dd_Smed_v6_5482_0_1, dd_Smed_v6_5482_0_1, [Score=343, Expect=2e-101]} {RNA1509_4307} {RNA1310_1568.1} {RNA815_447.1}

Mlig455_030252 {REF} {Length: 5474} {Pfam: RhoGAP domain [PF00620.29, score=135.9]; SH3 domain [PF00018.30, score=48.1]; Variant SH3 domain [PF14604.8, score=40.0]; Fes/CIP4, and EFC/F-BAR homology domain [PF00611.25, score=37.6]; Variant SH3 domain [PF07653.19, score=23.3]} {Human: ENSG00000196935, SRGAP1, SLIT-ROBO Rho GTPase activating protein 1, [RH, Score=450, Expect=2e-139]; ENSG00000266028, SRGAP2, SLIT-ROBO Rho GTPase activating protein 2, [RH, Score=443, Expect=6e-137]; ENSG00000196220, SRGAP3, SLIT-ROBO Rho GTPase activating protein 3, [RH, Score=436, Expect=5e-134]} {Mouse: ENSMUSG00000020121, Srgap1, SLIT-ROBO Rho GTPase activating protein 1, [RH, Score=441, Expect=4e-136]; ENSMUSG00000026425, Srgap2, SLIT-ROBO Rho GTPase activating protein 2, [RH, Score=437, Expect=5e-135]; ENSMUSG00000030257, Srgap3, SLIT-ROBO Rho GTPase activating protein 3, [RH, Score=433, Expect=3e-133]} {Dmel: FBgn0036257, RhoGAP68F, Rho GTPase activating protein at 68F, [Score=75.1, Expect=1e-13]} {Celegans: WBGene00006406, srgp-1, Slit-Robo GAP homolog, [RH, Score=333, Expect=3e-97]} {Smed: dd_Smed_v6_5482_0_1, dd_Smed_v6_5482_0_1, [RH, Score=370, Expect=3e-110]} {RNA1509_4307, RNA1509_55991} {RNA1310_1568.1, RNA1509_55991} {RNA1509_55991, RNA815_447.1}