M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_34919

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_34919 87 1.81 Mlig455_048538, Mlig455_053320

Neo: -

Age: Up-Down-Up

 TRPM2

Mlig455_048538 {REF} {Length: 1152} {NoTransDecoderORF} {RNA1310_96321.1} {RNA815_37383}

Mlig455_053320 {REF} {Length: 6613} {Pfam: SLOG in TRPM [PF18139.3, score=94.5]; Ion transport protein [PF00520.33, score=55.1]; SLOG in TRPM, prokaryote [PF18171.3, score=51.1]} {Human: ENSG00000142185, TRPM2, transient receptor potential cation channel subfamily M member 2, [Score=294, Expect=7e-80]} {Mouse: ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=239, Expect=5e-63]; ENSMUSG00000030523, Trpm1, transient receptor potential cation channel, subfamily M, member 1, [Score=238, Expect=1e-62]; ENSMUSG00000009246, Trpm5, transient receptor potential cation channel, subfamily M, member 5, [Score=234, Expect=6e-62]} {Dmel: FBgn0265194, Trpm, Transient receptor potential cation channel, subfamily M, [Score=244, Expect=2e-64]} {Celegans: WBGene00001795, gtl-1, GTL-1; Gon-Two Like (TRP subfamily), [Score=161, Expect=3e-39]} {Smed: dd_Smed_v6_17981_0_1, dd_Smed_v6_17981_0_1, [Score=1268, Expect=0.0]} {RNA1509_52731} {RNA1310_30612} {RNA815_28133}

Cumulative graph for MligTC455_34919

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.137 1.767 0.91734 1.00000
RegionR2 2.825 1.767 0.33393 0.72559
RegionR3 1.104 1.767 0.55656 1.00000
RegionR4 -0.752 1.767 0.93593 1.00000
RegionR5 1.634 1.767 0.48502 0.84875
RegionR6 2.406 1.767 0.32427 0.91361
RegionR7 -3.669 1.767 1.00000 1.00000
RegionR8 -3.411 1.767 0.99991 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -2.048 1.767 0.82808 1.00000
RegenerationR2 0.387 1.767 0.93533 1.00000
RegenerationR3 1.437 1.767 0.60057 0.90816
RegenerationR4 -0.552 1.767 0.87488 1.00000
RegenerationR5 -0.681 1.767 0.92211 1.00000
RegenerationR6 -1.633 1.767 0.55337 0.84104
RegenerationBL -0.506 1.767 0.99966 1.00000
RegenerationTP 5.968 1.767 0.11331 0.51689


Genes with expression patterns similar to MligTC455_34919

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_34919 87 1.81 Mlig455_048538, Mlig455_053320

Neo: -

Age: Up-Down-Up

 TRPM2 5 1.000 1.000 1.000 - 1.000 1.000

Mlig455_048538 {REF} {Length: 1152} {NoTransDecoderORF} {RNA1310_96321.1} {RNA815_37383}

Mlig455_053320 {REF} {Length: 6613} {Pfam: SLOG in TRPM [PF18139.3, score=94.5]; Ion transport protein [PF00520.33, score=55.1]; SLOG in TRPM, prokaryote [PF18171.3, score=51.1]} {Human: ENSG00000142185, TRPM2, transient receptor potential cation channel subfamily M member 2, [Score=294, Expect=7e-80]} {Mouse: ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=239, Expect=5e-63]; ENSMUSG00000030523, Trpm1, transient receptor potential cation channel, subfamily M, member 1, [Score=238, Expect=1e-62]; ENSMUSG00000009246, Trpm5, transient receptor potential cation channel, subfamily M, member 5, [Score=234, Expect=6e-62]} {Dmel: FBgn0265194, Trpm, Transient receptor potential cation channel, subfamily M, [Score=244, Expect=2e-64]} {Celegans: WBGene00001795, gtl-1, GTL-1; Gon-Two Like (TRP subfamily), [Score=161, Expect=3e-39]} {Smed: dd_Smed_v6_17981_0_1, dd_Smed_v6_17981_0_1, [Score=1268, Expect=0.0]} {RNA1509_52731} {RNA1310_30612} {RNA815_28133}
2. MligTC455_50833 43 0.9 Mlig455_040268

Neo: -

Age: -

 ANK2 1.711 - - 0.990 - 0.721 - Mlig455_040268 {REF} {Length: 4393} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=34.5]; Ankyrin repeats (many copies) [PF13637.8, score=29.5]; Ankyrin repeats (many copies) [PF13857.8, score=25.8]} {Human: ENSG00000145362, ANK2, ankyrin 2, [Score=61.2, Expect=1e-08]} {Mouse: ENSMUSG00000032826, Ank2, ankyrin 2, brain, [Score=63.5, Expect=9e-10]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=68.2, Expect=4e-11]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=55.5, Expect=3e-07]} {Smed: dd_Smed_v6_13669_0_1, dd_Smed_v6_13669_0_1, [Score=82.0, Expect=1e-15]} {RNA1509_33286} {RNA1310_11240, RNA1509_33286} {RNA1509_33286, RNA815_17700}
3. MligTC455_16998 650 13.54 Mlig455_061182

Neo: -

Age: -

Region-enriched R4: 2.023/0.00002

 CALM3 0.964 - - - - 0.964 - Mlig455_061182 {REF} {Length: 1000} {Pfam: EF hand [PF00036.34, score=83.9]; EF-hand domain pair [PF13499.8, score=82.3]; EF-hand domain [PF13405.8, score=70.8]; EF-hand domain pair [PF13833.8, score=64.9]; EF hand [PF13202.8, score=56.3]; EF-hand domain [PF14658.8, score=38.7]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=26.3]; OST-HTH/LOTUS domain [PF12872.9, score=18.4]} {Human: ENSG00000160014, CALM3, calmodulin 3, [Score=163, Expect=8e-52]; ENSG00000198668, CALM1, calmodulin 1, [Score=163, Expect=7e-52]; ENSG00000143933, CALM2, calmodulin 2, [Score=163, Expect=8e-52]} {Mouse: ENSMUSG00000036438, Calm2, calmodulin 2, [Score=163, Expect=5e-52]; ENSMUSG00000001175, Calm1, calmodulin 1, [Score=163, Expect=5e-52]; ENSMUSG00000019370, Calm3, calmodulin 3, [Score=163, Expect=5e-52]; ENSMUSG00000063130, Calml3, calmodulin-like 3, [Score=161, Expect=3e-51]} {Dmel: FBgn0000253, Cam, Calmodulin, [Score=162, Expect=2e-51]} {Celegans: WBGene00000552, cmd-1, Calmodulin, [Score=162, Expect=1e-51]} {Smed: dd_Smed_v6_255_0_1, dd_Smed_v6_255_0_1, [Score=162, Expect=1e-51]} {RNA1509_34192} {RNA1310_44408} {RNA815_20757}
4. MligTC455_42158 23 0.49 Mlig455_051891

Neo: -

Age: -

 0.962 - - - - 0.962 - Mlig455_051891 {REF} {Length: 348} {NoTransDecoderORF} {RNA1509_6161} {RNA1310_119994} {RNA815_33418}
5. MligTC455_22944 70 1.45 Mlig455_047814

Neo: -

Age: Up-Down-Down

 0.957 - - - - 0.957 - Mlig455_047814 {REF} {Length: 840} {NoTransDecoderORF} {RNA1310_40399} {RNA815_34779.1}
6. MligTC455_41092 13 0.28 Mlig455_060390

Neo: Irradiation

Age: Up-Down-Down

 MFSD2A 0.951 - - - - 0.951 - Mlig455_060390 {REF} {Length: 784} {Pfam: MFS/sugar transport protein [PF13347.8, score=92.2]; Major Facilitator Superfamily [PF07690.18, score=21.7]} {Human: ENSG00000168389, MFSD2A, major facilitator superfamily domain containing 2A, [Score=79.3, Expect=1e-16]} {Mouse: ENSMUSG00000028655, Mfsd2a, major facilitator superfamily domain containing 2A, [Score=84.0, Expect=2e-18]} {Smed: dd_Smed_v6_11210_0_1, dd_Smed_v6_11210_0_1, [Score=96.7, Expect=4e-23]} {RNA1509_14841} {RNA1310_6892} {RNA815_35756}
7. MligTC455_13875 92 1.92 Mlig455_025418

Neo: -

Age: -

 0.95 - - 0.950 - - - Mlig455_025418 {REF} {Length: 631} {NoTransDecoderORF}
8. MligTC455_48279 554 11.54 Mlig455_020234

Neo: Irradiation

Age: -

 PICALM 0.95 - 0.950 - - - - Mlig455_020234 {REF} {Length: 3235} {Pfam: ANTH domain [PF07651.18, score=205.4]; ENTH domain [PF01417.22, score=40.3]} {Human: ENSG00000073921, PICALM, phosphatidylinositol binding clathrin assembly protein, [Score=420, Expect=1e-138]} {Mouse: ENSMUSG00000039361, Picalm, phosphatidylinositol binding clathrin assembly protein, [Score=417, Expect=7e-137]} {Dmel: FBgn0086372, lap, like-AP180, [Score=391, Expect=8e-127]} {Celegans: WBGene00006751, unc-11, Phosphatidylinositol-binding clathrin assembly protein unc-11, [RH, Score=366, Expect=1e-117]} {Smed: dd_Smed_v6_1463_0_1, dd_Smed_v6_1463_0_1, [Score=401, Expect=2e-131]} {RNA1509_47050, RNA1509_55306} {RNA1310_7658.1, RNA1509_47050} {RNA1509_47050, RNA815_17321}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA