M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_34921

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_34921 95 1.97 Mlig455_065099

Neo: -

Age: -

 Mlig455_065099 {REF} {Length: 2743} {RNA1509_47464} {RNA1310_2515} {RNA815_10960.1}

Cumulative graph for MligTC455_34921

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -4.755 1.916 0.99961 1.00000
RegionR2 1.601 1.916 0.25641 0.63694
RegionR3 1.614 1.916 0.20385 0.74400
RegionR4 -0.052 1.916 0.76626 1.00000
RegionR5 2.105 1.916 0.05460 0.19951
RegionR6 1.758 1.916 0.15926 0.71156
RegionR7 -3.669 1.916 0.99969 1.00000
RegionR8 1.398 1.916 0.43559 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.254 1.916 0.99998 1.00000
RegenerationR2 0.449 1.916 0.61088 0.91976
RegenerationR3 0.044 1.916 0.94312 1.00000
RegenerationR4 1.388 1.916 0.18058 0.62092
RegenerationR5 0.5 1.916 0.57090 0.89625
RegenerationR6 1.161 1.916 0.20960 0.55269
RegenerationBL 1.01 1.916 0.46520 0.83182
RegenerationTP 0.627 1.916 0.63594 0.98127


Genes with expression patterns similar to MligTC455_34921

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_34921 95 1.97 Mlig455_065099

Neo: -

Age: -

 5 1.000 - 1.000 1.000 1.000 1.000 Mlig455_065099 {REF} {Length: 2743} {RNA1509_47464} {RNA1310_2515} {RNA815_10960.1}
2. MligTC455_43665 34 0.71 Mlig455_039635

Neo: -

Age: logFC(26M/2M)=0.552

 WDR38 1.824 - - 0.858 - - 0.966 Mlig455_039635 {REF} {Length: 8946} {Pfam: WD domain, G-beta repeat [PF00400.34, score=39.6]} {Human: ENSG00000136918, WDR38, WD repeat domain 38, [Score=50.4, Expect=3e-06]} {Smed: dd_Smed_v6_8615_0_1, dd_Smed_v6_8615_0_1, [Score=298, Expect=9e-97]} {RNA1310_44404} {RNA815_33681}
3. MligTC455_33962 42 0.87 Mlig455_006329

Neo: -

Age: -

 1.715 - - - 0.751 - 0.964 Mlig455_006329 {REF} {Length: 1000} {NoTransDecoderORF} {RNA1310_67418.1}
4. MligTC455_18210 118 2.46 Mlig455_002609

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.507

 CASP9 1.713 - - - 0.760 - 0.953 Mlig455_002609 {REF} {Length: 2303} {Pfam: Caspase domain [PF00656.24, score=87.0]} {Human: ENSG00000132906, CASP9, caspase 9, [Score=76.6, Expect=3e-14]} {Mouse: ENSMUSG00000029863, Casp2, caspase 2, [Score=75.1, Expect=6e-14]} {Dmel: FBgn0019972, Drice, Death related ICE-like caspase, [Score=72.8, Expect=2e-13]} {Celegans: WBGene00000417, ced-3, Cell death protein 3 Cell death protein 3 subunit 1 Cell death protein 3 subunit 2, [Score=106, Expect=2e-25]} {Smed: dd_Smed_v6_1167_0_1, dd_Smed_v6_1167_0_1, [Score=82.4, Expect=2e-17]} {RNA1310_10041.1} {RNA815_22837.1}
5. MligTC455_16400 316 6.58 Mlig455_020528

Neo: -

Age: -

 1.684 - - - 0.726 - 0.958 Mlig455_020528 {REF} {Length: 1266} {TRANSSPLICED} {RNA1509_18821, RNA1509_33940} {RNA1310_6782.1, RNA1509_18821, RNA1509_33940} {RNA1509_18821, RNA1509_33940, RNA815_4292}
6. MligTC455_10526 30 0.63 Mlig455_034032

Neo: -

Age: -

 0.99 - - - - - 0.990 Mlig455_034032 {REF} {Length: 2620} {NoTransDecoderORF} {RNA1310_55520} {RNA815_23630}
7. MligTC455_42640 68 1.41 Mlig455_030092

Neo: -

Age: -

 0.987 - - - - - 0.987 Mlig455_030092 {REF} {Length: 1027} {RNA1509_8614} {RNA1310_11540} {RNA815_3767}
8. MligTC455_51148 51 1.06 Mlig455_020351

Neo: -

Age: -

 0.978 - - - - - 0.978 Mlig455_020351 {REF} {Length: 738} {NoTransDecoderORF} {RNA1509_51494} {RNA1310_38751}
9. MligTC455_36416 57 1.19 Mlig455_064826

Neo: -

Age: -

 0.976 - - - - - 0.976 Mlig455_064826 {REF} {Length: 1774} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=22.5]} {RNA1310_14662} {RNA815_33830}
10. MligTC455_44068 47 0.99 Mlig455_063671

Neo: -

Age: -

 THRA 0.975 - - - - - 0.975 Mlig455_063671 {REF} {Length: 4986} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=106.0]; Ligand-binding domain of nuclear hormone receptor [PF00104.32, score=63.6]} {Human: ENSG00000126351, THRA, thyroid hormone receptor alpha, [Score=170, Expect=4e-45]} {Mouse: ENSMUSG00000058756, Thra, thyroid hormone receptor alpha, [Score=173, Expect=5e-46]} {Dmel: FBgn0000546, EcR, Ecdysone receptor, [Score=172, Expect=4e-44]} {Celegans: WBGene00003613, nhr-14, Nuclear hormone receptor family member nhr-14, [Score=110, Expect=2e-25]} {Smed: dd_Smed_v6_3012_0_1, dd_Smed_v6_3012_0_1, [Score=194, Expect=7e-52]} {RNA1509_27629} {RNA1310_74061} {RNA815_54074}
11. MligTC455_32616 69 1.45 Mlig455_009034, Mlig455_047067, Mlig455_054638, Mlig455_057647

Neo: -

Age: -

 ZCCHC7 0.974 - - - - - 0.974

Mlig455_009034 {REF} {Length: 5823} {TRANSSPLICED} {Human: ENSG00000147905, ZCCHC7, zinc finger CCHC-type containing 7, [RH, Score=70.5, Expect=9e-12]} {Mouse: ENSMUSG00000035649, Zcchc7, zinc finger, CCHC domain containing 7, [RH, Score=72.8, Expect=1e-12]} {Dmel: FBgn0036668, Zcchc7, Zinc finger CCHC-type containing 7, [Score=73.9, Expect=6e-13]} {Smed: dd_Smed_v6_13094_0_1, dd_Smed_v6_13094_0_1, [RH, Score=116, Expect=1e-26]} {RNA1509_13002, RNA1509_39679} {RNA1310_7329, RNA1509_39679} {RNA1509_39679, RNA815_2068}

Mlig455_047067 {REF} {Length: 2342} {RNA1509_31392} {RNA1310_11109} {RNA815_4621}

Mlig455_054638 {REF} {Length: 2041} {RNA1509_31392} {RNA1310_11109} {RNA815_4621}

Mlig455_057647 {REF} {Length: 750} {Human: ENSG00000147905, ZCCHC7, zinc finger CCHC-type containing 7, [RH, Score=70.5, Expect=9e-12]} {Mouse: ENSMUSG00000035649, Zcchc7, zinc finger, CCHC domain containing 7, [RH, Score=72.8, Expect=1e-12]} {Dmel: FBgn0036668, Zcchc7, Zinc finger CCHC-type containing 7, [Score=73.9, Expect=6e-13]} {Smed: dd_Smed_v6_13094_0_1, dd_Smed_v6_13094_0_1, [RH, Score=116, Expect=1e-26]} {RNA1509_31392} {RNA1310_11109} {RNA815_4621}
12. MligTC455_34675 37 0.77 Mlig455_031616

Neo: -

Age: Down-Up-Up

 TNN 0.97 - - - - - 0.970 Mlig455_031616 {REF} {Length: 2913} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=103.6]; PAN domain [PF00024.28, score=25.8]} {Human: ENSG00000120332, TNN, tenascin N, [Score=89.4, Expect=9e-19]; ENSG00000171819, ANGPTL7, angiopoietin like 7, [Score=87.4, Expect=1e-18]; ENSG00000160339, FCN2, ficolin 2, [Score=87.0, Expect=5e-19]} {Mouse: ENSMUSG00000026725, Tnn, tenascin N, [Score=88.2, Expect=2e-18]; ENSMUSG00000026835, Fcnb, ficolin B, [Score=86.7, Expect=9e-19]; ENSMUSG00000015829, Tnr, tenascin R, [Score=84.3, Expect=3e-17]; ENSMUSG00000028989, Angptl7, angiopoietin-like 7, [Score=84.3, Expect=8e-18]} {Dmel: FBgn0033312, CG8642, [Score=82.8, Expect=4e-17]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=79.0, Expect=6e-16]} {RNA1509_5045} {RNA1310_22811} {RNA815_37530}
13. MligTC455_42609 38 0.78 Mlig455_025278, Mlig455_025605

Neo: -

Age: -

 0.968 - - - - - 0.968

Mlig455_025278 {REF} {Length: 395} {NoTransDecoderORF} {RNA1509_51543} {RNA1310_36845} {RNA815_641.1}

Mlig455_025605 {REF} {Length: 360} {NoTransDecoderORF} {RNA1509_51543} {RNA1310_17090} {RNA815_641.1}
14. MligTC455_05067 18 0.38 Mlig455_018610

Neo: -

Age: -

 0.967 - - - - - 0.967 Mlig455_018610 {REF} {Length: 1505} {RNA1310_36518} {RNA815_19809}
15. MligTC455_06920 64 1.33 Mlig455_030382

Neo: Germline

Age: -

Region-enriched R4: 3.121/0.01836

 0.963 - - - - - 0.963 Mlig455_030382 {REF} {Length: 1405} {RNA1509_54678} {RNA1310_47150, RNA1509_54678} {RNA1509_54678, RNA815_42356}
16. MligTC455_51750 118 2.45 Mlig455_045150, Mlig455_045184

Neo: Int S/G2/M

Age: -

 SYK 0.963 - - - - - 0.963

Mlig455_045150 {REF} {Length: 3615} {TRANSSPLICED} {Pfam: Protein tyrosine and serine/threonine kinase [PF07714.19, score=272.3]; Protein kinase domain [PF00069.27, score=124.5]; SH2 domain [PF00017.26, score=112.5]} {Human: ENSG00000165025, SYK, spleen associated tyrosine kinase, [RH, Score=259, Expect=1e-76]} {Mouse: ENSMUSG00000021457, Syk, spleen tyrosine kinase, [RH, Score=256, Expect=1e-75]} {Dmel: FBgn0015295, Shark, SH2 ankyrin repeat kinase, [Score=213, Expect=4e-58]} {Celegans: WBGene00005078, src-2, Tyrosine protein-kinase src-2, [Score=208, Expect=4e-59]} {Smed: dd_Smed_v6_9075_0_5, dd_Smed_v6_9075_0_5, [Score=529, Expect=1e-178]} {RNA1509_40631} {RNA1310_12548.1} {RNA815_24011}

Mlig455_045184 {REF} {Length: 3616} {TRANSSPLICED} {Pfam: Protein tyrosine and serine/threonine kinase [PF07714.19, score=273.2]; Protein kinase domain [PF00069.27, score=124.5]; SH2 domain [PF00017.26, score=112.5]} {Human: ENSG00000165025, SYK, spleen associated tyrosine kinase, [RH, Score=259, Expect=1e-76]} {Mouse: ENSMUSG00000021457, Syk, spleen tyrosine kinase, [RH, Score=256, Expect=1e-75]} {Dmel: FBgn0015295, Shark, SH2 ankyrin repeat kinase, [Score=211, Expect=1e-57]} {Celegans: WBGene00005078, src-2, Tyrosine protein-kinase src-2, [Score=211, Expect=4e-60]} {Smed: dd_Smed_v6_9075_0_5, dd_Smed_v6_9075_0_5, [Score=527, Expect=8e-178]} {RNA1509_39526, RNA1509_40631} {RNA1310_12548.1, RNA1509_39526, RNA1509_40631} {RNA1509_39526, RNA1509_40631, RNA815_24011}
17. MligTC455_27575 55 1.15 Mlig455_006687

Neo: Germline

Age: Up-Down-Up

Region-enriched R4: 3.644/0.01263

 SCNN1G 0.962 - - - - - 0.962 Mlig455_006687 {REF} {Length: 2208} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=200.9]} {Human: ENSG00000166828, SCNN1G, sodium channel epithelial 1 gamma subunit, [Score=65.5, Expect=2e-10]} {Mouse: ENSMUSG00000038276, Asic3, acid-sensing (proton-gated) ion channel 3, [Score=66.2, Expect=5e-11]; ENSMUSG00000000216, Scnn1g, sodium channel, nonvoltage-gated 1 gamma, [Score=64.3, Expect=2e-10]} {Celegans: WBGene00012137, asic-2, Degenerin-like protein asic-2, [Score=48.5, Expect=1e-05]} {Smed: dd_Smed_v6_17245_0_1, dd_Smed_v6_17245_0_1, [Score=102, Expect=7e-23]} {RNA1509_36956} {RNA1310_12232.1} {RNA815_4577.1}
18. MligTC455_11104 194 4.04 Mlig455_021108, Mlig455_037721, Mlig455_041171, Mlig455_044245, Mlig455_065307, Mlig455_068381, Mlig455_071049

Neo: -

Age: -

 0.961 - - - - - 0.961

Mlig455_021108 {REF} {Length: 488} {NoTransDecoderORF} {RNA1509_46268} {RNA1310_246.1} {RNA815_38241}

Mlig455_037721 {REF} {Length: 642} {NoTransDecoderORF} {RNA1509_46268} {RNA1310_246.1} {RNA815_38241}

Mlig455_041171 {REF} {Length: 535} {NoTransDecoderORF} {RNA1509_46268} {RNA1310_246.1} {RNA815_38241}

Mlig455_044245 {REF} {Length: 362} {NoTransDecoderORF} {RNA1509_46268} {RNA1310_246.1} {RNA815_38241}

Mlig455_065307 {REF} {Length: 411} {NoTransDecoderORF} {RNA1509_46268} {RNA1310_246.1} {RNA815_38241}

Mlig455_068381 {REF} {Length: 542} {NoTransDecoderORF} {RNA1509_46268} {RNA1310_246.1} {RNA815_38241}

Mlig455_071049 {REF} {Length: 509} {NoTransDecoderORF} {RNA1509_46268} {RNA1310_246.1} {RNA815_38241}
19. MligTC455_31764 62 1.28 Mlig455_006258

Neo: -

Age: Down-Down-Up

Region-enriched R8: 4.078/0.01607

 LMNA 0.961 - - - - - 0.961 Mlig455_006258 {REF} {Length: 2636} {Pfam: Intermediate filament protein [PF00038.23, score=111.4]} {Human: ENSG00000160789, LMNA, lamin A/C, [Score=87.8, Expect=7e-18]; ENSG00000026025, VIM, vimentin, [Score=84.7, Expect=4e-17]} {Mouse: ENSMUSG00000028063, Lmna, lamin A, [Score=86.3, Expect=2e-17]; ENSMUSG00000026728, Vim, vimentin, [Score=85.5, Expect=2e-17]; ENSMUSG00000095241, Gm5478, predicted pseudogene 5478, [Score=82.8, Expect=2e-16]} {Dmel: FBgn0010397, LamC, Lamin C, [Score=93.6, Expect=5e-20]} {Celegans: WBGene00002050, ifa-1, Intermediate filament protein ifa-1, [Score=165, Expect=1e-44]} {Smed: dd_Smed_v6_3871_0_1, dd_Smed_v6_3871_0_1, [Score=190, Expect=6e-54]} {RNA1509_56508} {RNA1310_5840} {RNA815_9167}
20. MligTC455_24335 62 1.29 Mlig455_006542

Neo: -

Age: -

 0.958 - - 0.958 - - - Mlig455_006542 {REF} {Length: 3028} {NoTransDecoderORF} {RNA1310_45624}
21. MligTC455_14189 109 2.27 Mlig455_070981

Neo: -

Age: Down-Up-Up

 0.957 - - - - - 0.957 Mlig455_070981 {REF} {Length: 2361} {RNA1509_38227} {RNA1310_10195} {RNA815_6875}
22. MligTC455_17135 71 1.49 Mlig455_036581, Mlig455_057768

Neo: Int S/G2/M

Age: -

Region-enriched R2: 5.054/0.04899

 ALKBH7 0.957 - - - - - 0.957

Mlig455_036581 {REF} {Length: 1231} {TRANSSPLICED} {Pfam: 2OG-Fe(II) oxygenase superfamily [PF13532.8, score=39.0]} {Human: ENSG00000125652, ALKBH7, alkB homolog 7, [RH, Score=176, Expect=1e-54]} {Mouse: ENSMUSG00000002661, Alkbh7, alkB homolog 7, [RH, Score=176, Expect=8e-55]} {Dmel: FBgn0036210, CG14130, [RH, Score=162, Expect=7e-49]} {Celegans: WBGene00012920, Y46G5A.35, [RH, Score=159, Expect=3e-48]} {Smed: dd_Smed_v6_2420_0_1, dd_Smed_v6_2420_0_1, [RH, Score=189, Expect=4e-60]} {RNA1509_28240} {RNA1310_25299.2} {RNA815_14428.1}

Mlig455_057768 {REF} {Length: 1232} {TRANSSPLICED} {Pfam: 2OG-Fe(II) oxygenase superfamily [PF13532.8, score=37.5]} {Human: ENSG00000125652, ALKBH7, alkB homolog 7, [RH, Score=177, Expect=8e-55]} {Mouse: ENSMUSG00000002661, Alkbh7, alkB homolog 7, [RH, Score=176, Expect=8e-55]} {Dmel: FBgn0036210, CG14130, [RH, Score=163, Expect=2e-49]} {Celegans: WBGene00012920, Y46G5A.35, [RH, Score=160, Expect=7e-49]} {Smed: dd_Smed_v6_2420_0_1, dd_Smed_v6_2420_0_1, [RH, Score=189, Expect=6e-60]} {RNA1509_28240} {RNA1310_25299.2} {RNA815_14428.1}
23. MligTC455_41607 27 0.55 Mlig455_039912

Neo: -

Age: -

 0.957 - - - - - 0.957 Mlig455_039912 {REF} {Length: 2551} {Pfam: LCCL domain [PF03815.21, score=19.0]} {RNA1310_25006} {RNA815_53385}
24. MligTC455_09047 37 0.77 Mlig455_056876

Neo: -

Age: -

 0.956 - - - - - 0.956 Mlig455_056876 {REF} {Length: 2003} {RNA1509_48015, RNA1509_55117} {RNA1310_10722, RNA1509_48015} {RNA1509_48015, RNA815_42109}
25. MligTC455_29473 45 0.93 Mlig455_003752

Neo: -

Age: -

 0.955 - - - - - 0.955 Mlig455_003752 {REF} {Length: 3708} {TRANSSPLICED} {Pfam: Myb/SANT-like DNA-binding domain [PF13837.8, score=26.2]} {RNA1509_43957} {RNA1310_10800.1} {RNA815_43614}
26. MligTC455_38891 74 1.54 Mlig455_064866

Neo: -

Age: -

 0.955 - - - - - 0.955 Mlig455_064866 {REF} {Length: 5908} {TRANSSPLICED} {Pfam: CD20-like family [PF04103.17, score=31.4]} {RNA1509_32088, RNA1509_47982} {RNA1310_22607, RNA1509_47982} {RNA1509_47982, RNA815_13989.1}
27. MligTC455_16095 20 0.41 Mlig455_027471

Neo: -

Age: -

Regeneration-enriched R6: 4.851
Regeneration-enriched R2: 4.348
Regeneration-enriched R5: 3.643

 0.953 - - - - - 0.953 Mlig455_027471 {REF} {Length: 425} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_100627}
28. MligTC455_19684 106 2.2 Mlig455_009082

Neo: -

Age: Up-Down-Up

 0.952 - - - - - 0.952 Mlig455_009082 {REF} {Length: 1842} {RNA1509_57072} {RNA1310_25564} {RNA815_54244}
29. MligTC455_26193 305 6.36 Mlig455_024085

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.449

 PEF1 0.952 - - - - - 0.952 Mlig455_024085 {REF} {Length: 2400} {Pfam: EF-hand domain [PF13405.8, score=57.7]; EF hand [PF00036.34, score=54.7]; EF-hand domain pair [PF13499.8, score=52.8]; EF hand [PF13202.8, score=43.0]; EF-hand domain pair [PF13833.8, score=35.0]} {Human: ENSG00000162517, PEF1, penta-EF-hand domain containing 1, [Score=93.6, Expect=7e-22]} {Mouse: ENSMUSG00000028779, Pef1, penta-EF hand domain containing 1, [Score=94.4, Expect=2e-22]} {Dmel: FBgn0033529, CG17765, [Score=97.8, Expect=2e-24]} {Celegans: WBGene00019770, M04F3.4, [Score=84.0, Expect=9e-20]} {Smed: dd_Smed_v6_6190_0_1, dd_Smed_v6_6190_0_1, [Score=96.7, Expect=1e-24]} {RNA1509_8928} {RNA1310_11493} {RNA815_7652.1}
30. MligTC455_34095 198 4.13 Mlig455_060846

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.531

 PRR9 0.952 - - - - - 0.952 Mlig455_060846 {REF} {Length: 2435} {Human: ENSG00000203783, PRR9, proline rich 9, [Score=48.1, Expect=7e-07]} {Mouse: ENSMUSG00000024246, Thumpd2, THUMP domain containing 2, [Score=47.0, Expect=1e-05]} {RNA1509_35315, RNA1509_43939} {RNA1310_43501, RNA1509_43939} {RNA1509_43939, RNA815_22847.1}
31. MligTC455_48381 400 8.34 Mlig455_024700

Neo: -

Age: -

Region-enriched R2: 2.412/0.00825

 PRPF18 0.951 - - - - - 0.951 Mlig455_024700 {REF} {Length: 1807} {Pfam: Prp18 domain [PF02840.17, score=177.2]; pre-mRNA processing factor 4 (PRP4) like [PF08799.13, score=36.9]} {Human: ENSG00000165630, PRPF18, pre-mRNA processing factor 18, [RH, Score=253, Expect=7e-82]} {Mouse: ENSMUSG00000039449, Prpf18, pre-mRNA processing factor 18, [RH, Score=252, Expect=3e-81]} {Dmel: FBgn0027784, Prp18, [RH, Score=255, Expect=6e-83]} {Celegans: WBGene00009320, F32B6.3, [RH, Score=199, Expect=7e-61]} {Smed: dd_Smed_v6_7260_0_1, dd_Smed_v6_7260_0_1, [RH, Score=241, Expect=4e-77]} {RNA1509_45931, RNA1509_7732} {RNA1310_23290, RNA1509_45931, RNA1509_7732} {RNA1509_45931, RNA1509_7732, RNA815_1460.1}
32. MligTC455_24419 70 1.46 Mlig455_047741

Neo: -

Age: Up-Down-Down

 0.95 - - - - - 0.950 Mlig455_047741 {REF} {Length: 2422} {TRANSSPLICED} {RNA1310_34055} {RNA815_35919}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA