M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_35068

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_35068 15730 327.71 Mlig455_042078

Neo: -

Age: Down-Up-Down

 CCDC86 Mlig455_042078 {REF} {Length: 1409} {TRANSSPLICED} {Pfam: Cgr1 family [PF03879.16, score=59.0]} {Human: ENSG00000110104, CCDC86, coiled-coil domain containing 86, [RH, Score=63.5, Expect=2e-12]} {Mouse: ENSMUSG00000024732, Ccdc86, coiled-coil domain containing 86, [RH, Score=52.0, Expect=2e-08]} {Dmel: FBgn0031040, CG14210, [RH, Score=50.8, Expect=6e-09]} {Celegans: WBGene00012739, Y40B1B.7, [RH, Score=45.1, Expect=6e-07]} {RNA1509_1666, RNA1509_6045} {RNA1310_60254.1, RNA1509_1666, RNA1509_6045} {RNA1509_1666, RNA1509_6045, RNA815_18180.1}

Cumulative graph for MligTC455_35068

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.421 8.408 0.24288 0.88947
RegionR2 0.042 8.408 0.87555 1.00000
RegionR3 0.012 8.408 0.95875 1.00000
RegionR4 0.089 8.408 0.73441 1.00000
RegionR5 -0.175 8.408 0.45847 0.82071
RegionR6 0.108 8.408 0.64725 1.00000
RegionR7 0.328 8.408 0.16050 0.73967
RegionR8 0.017 8.408 0.94845 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.499 8.408 0.26038 0.96822
RegenerationR2 -0.117 8.408 0.69690 0.95507
RegenerationR3 -0.271 8.408 0.37740 0.78912
RegenerationR4 -0.06 8.408 0.84842 1.00000
RegenerationR5 -0.149 8.408 0.62492 0.92038
RegenerationR6 -0.391 8.408 0.20364 0.54540
RegenerationBL -0.829 8.408 0.00291 0.04602
RegenerationTP 0.041 8.408 0.88477 1.00000


Genes with expression patterns similar to MligTC455_35068

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_35068 15730 327.71 Mlig455_042078

Neo: -

Age: Down-Up-Down

 CCDC86 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_042078 {REF} {Length: 1409} {TRANSSPLICED} {Pfam: Cgr1 family [PF03879.16, score=59.0]} {Human: ENSG00000110104, CCDC86, coiled-coil domain containing 86, [RH, Score=63.5, Expect=2e-12]} {Mouse: ENSMUSG00000024732, Ccdc86, coiled-coil domain containing 86, [RH, Score=52.0, Expect=2e-08]} {Dmel: FBgn0031040, CG14210, [RH, Score=50.8, Expect=6e-09]} {Celegans: WBGene00012739, Y40B1B.7, [RH, Score=45.1, Expect=6e-07]} {RNA1509_1666, RNA1509_6045} {RNA1310_60254.1, RNA1509_1666, RNA1509_6045} {RNA1509_1666, RNA1509_6045, RNA815_18180.1}
2. MligTC455_09824 279 5.81 Mlig455_060224

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-1.009

 2.656 - - 0.915 0.952 - 0.789 Mlig455_060224 {REF} {Length: 2579} {RNA1509_40902} {RNA1310_14269} {RNA815_19496}
3. MligTC455_45208 929 19.35 Mlig455_070298

Neo: -

Age: logFC(26M/2M)=-0.334

 2.472 - - - 0.746 0.950 0.776 Mlig455_070298 {REF} {Length: 1543} {RNA1509_21491, RNA1509_35528} {RNA1310_3497.1, RNA1509_21491, RNA1509_35528} {RNA1509_21491, RNA1509_35528, RNA815_14551}
4. MligTC455_20027 1159 24.14 Mlig455_007217, Mlig455_007451

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.831

 GCLM 1.726 - - 0.771 0.955 - -

Mlig455_007217 {REF} {Length: 2261} {Human: ENSG00000023909, GCLM, glutamate-cysteine ligase modifier subunit, [RH, Score=120, Expect=7e-32]} {Mouse: ENSMUSG00000028124, Gclm, glutamate-cysteine ligase, modifier subunit, [RH, Score=120, Expect=3e-32]} {Dmel: FBgn0046114, Gclm, Glutamate-cysteine ligase modifier subunit, [Score=78.6, Expect=9e-17]} {Celegans: WBGene00017084, E01A2.1, [RH, Score=78.6, Expect=8e-17]} {Smed: dd_Smed_v6_487_0_1, dd_Smed_v6_487_0_1, [Score=107, Expect=9e-28]} {RNA1509_2089} {RNA1310_10444.1} {RNA815_4215}

Mlig455_007451 {REF} {Length: 2259} {Human: ENSG00000023909, GCLM, glutamate-cysteine ligase modifier subunit, [RH, Score=120, Expect=7e-32]} {Mouse: ENSMUSG00000028124, Gclm, glutamate-cysteine ligase, modifier subunit, [RH, Score=120, Expect=3e-32]} {Dmel: FBgn0046114, Gclm, Glutamate-cysteine ligase modifier subunit, [Score=78.6, Expect=9e-17]} {Celegans: WBGene00017084, E01A2.1, [RH, Score=78.6, Expect=8e-17]} {Smed: dd_Smed_v6_487_0_1, dd_Smed_v6_487_0_1, [Score=107, Expect=9e-28]} {RNA1509_2089} {RNA1310_10444.1} {RNA815_4215}
5. MligTC455_44428 3009 62.7 Mlig455_008256, Mlig455_040636

Neo: -

Age: Down-Up-Down

Regeneration-downregulated BL: -1.749

Regeneration-depleted BL: -1.749

 1.685 - - - 0.954 - 0.731

Mlig455_008256 {REF} {Length: 913} {TRANSSPLICED} {RNA1509_35393, RNA1509_38575, RNA1509_39483, RNA1509_41638, RNA1509_57564} {RNA1310_50507, RNA1509_35393, RNA1509_38575, RNA1509_41638, RNA1509_57564} {RNA1509_35393, RNA1509_38575, RNA1509_41638, RNA1509_57564, RNA815_25701}

Mlig455_040636 {REF} {Length: 627} {RNA1509_41826} {RNA1310_50507} {RNA815_25701}
6. MligTC455_52528 145 3.03 Mlig455_025895

Neo: -

Age: logFC(26M/2M)=-0.670

 FLVCR2 1.656 - - 0.704 0.952 - - Mlig455_025895 {REF} {Length: 2218} {TRANSSPLICED} {Pfam: Major Facilitator Superfamily [PF07690.18, score=82.0]; Sugar (and other) transporter [PF00083.26, score=18.7]} {Human: ENSG00000119686, FLVCR2, feline leukemia virus subgroup C cellular receptor family member 2, [RH, Score=364, Expect=4e-119]} {Mouse: ENSMUSG00000034258, Flvcr2, feline leukemia virus subgroup C cellular receptor 2, [RH, Score=368, Expect=2e-120]} {Dmel: FBgn0033196, CG1358, [RH, Score=350, Expect=1e-114]} {Celegans: WBGene00015632, C09D4.1, Uncharacterized MFS-type transporter C09D4.1, [RH, Score=358, Expect=2e-116]} {Smed: dd_Smed_v6_7578_0_1, dd_Smed_v6_7578_0_1, [Score=335, Expect=3e-109]} {RNA1509_31725} {RNA1310_8852.1, RNA1509_31725} {RNA1509_31725, RNA815_14234}
7. MligTC455_21526 556 11.59 Mlig455_052730

Neo: -

Age: Up-Down-Down

 SLC26A5 0.967 - - - 0.967 - - Mlig455_052730 {REF} {Length: 4391} {Pfam: Sulfate permease family [PF00916.22, score=264.3]; STAS domain [PF01740.23, score=80.1]} {Human: ENSG00000170615, SLC26A5, solute carrier family 26 member 5, [Score=340, Expect=3e-103]} {Mouse: ENSMUSG00000029015, Slc26a5, solute carrier family 26, member 5, [Score=340, Expect=2e-103]} {Dmel: FBgn0036770, Prestin, [Score=234, Expect=4e-65]} {Celegans: WBGene00013963, sulp-8, Anion transporter SULP-8a; Anion transporter SULP-8b; SULfate Permease family, [Score=229, Expect=2e-64]} {Smed: dd_Smed_v6_8150_0_1, dd_Smed_v6_8150_0_1, [Score=389, Expect=3e-121]} {RNA1509_2157, RNA1509_36681, RNA1509_45989, RNA1509_52408} {RNA1310_11012, RNA1509_2157, RNA1509_36681, RNA1509_45989, RNA1509_52408} {RNA1509_2157, RNA1509_36681, RNA1509_45989, RNA1509_52408, RNA815_1075.1}
8. MligTC455_30763 3106 64.71 Mlig455_047787, Mlig455_052629

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=1.501

 0.963 - - - - 0.963 -

Mlig455_047787 {REF} {Length: 1115} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_1200} {RNA1310_29002} {RNA815_7853.1}

Mlig455_052629 {REF} {Length: 1115} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_1693} {RNA1310_29002} {RNA815_7853.1}
9. MligTC455_30811 661 13.78 Mlig455_003103, Mlig455_058346

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.450

 0.958 - - - 0.958 - -

Mlig455_003103 {REF} {Length: 13092} {RNA1509_25856} {RNA1310_27487} {RNA815_15897.1}

Mlig455_058346 {REF} {Length: 2702} {TRANSSPLICED} {RNA1509_25856} {RNA1310_18000.1} {RNA815_10283}
10. MligTC455_50510 9657 201.19 Mlig455_010517, Mlig455_061819, Mlig455_061855, Mlig455_061863

Neo: -

Age: Down-Up-Down

Regeneration-downregulated BL: -1.759

Regeneration-depleted BL: -1.759

 PPP1R3B 0.954 - - - 0.954 - -

Mlig455_010517 {REF} {Length: 1875} {Pfam: Carbohydrate/starch-binding module (family 21) [PF03370.15, score=63.8]; Starch/carbohydrate-binding module (family 53) [PF16760.7, score=27.0]} {Human: ENSG00000173281, PPP1R3B, protein phosphatase 1 regulatory subunit 3B, [Score=57.4, Expect=6e-09]; ENSG00000285343, PPP1R3B, protein phosphatase 1 regulatory subunit 3B, [Score=57.4, Expect=6e-09]} {Mouse: ENSMUSG00000072494, Ppp1r3e, protein phosphatase 1, regulatory subunit 3E, [Score=64.7, Expect=1e-11]} {Celegans: WBGene00019211, H18N23.2, Protein phosphatase 1 regulatory subunit, [Score=72.8, Expect=2e-14]} {Smed: dd_Smed_v6_1526_0_1, dd_Smed_v6_1526_0_1, [Score=58.9, Expect=6e-10]} {RNA1509_2365} {RNA1310_15793} {RNA815_6339.1}

Mlig455_061819 {REF} {Length: 1875} {Pfam: Carbohydrate/starch-binding module (family 21) [PF03370.15, score=64.0]; Starch/carbohydrate-binding module (family 53) [PF16760.7, score=27.0]} {Human: ENSG00000173281, PPP1R3B, protein phosphatase 1 regulatory subunit 3B, [Score=55.5, Expect=2e-08]; ENSG00000285343, PPP1R3B, protein phosphatase 1 regulatory subunit 3B, [Score=55.5, Expect=2e-08]} {Mouse: ENSMUSG00000072494, Ppp1r3e, protein phosphatase 1, regulatory subunit 3E, [Score=64.3, Expect=1e-11]} {Celegans: WBGene00019211, H18N23.2, Protein phosphatase 1 regulatory subunit, [Score=70.1, Expect=1e-13]} {Smed: dd_Smed_v6_1526_0_1, dd_Smed_v6_1526_0_1, [Score=57.8, Expect=1e-09]} {RNA1509_20831, RNA1509_21113, RNA1509_2365, RNA1509_51404} {RNA1310_15793, RNA1509_20831, RNA1509_21113, RNA1509_2365, RNA1509_51404} {RNA1509_20831, RNA1509_21113, RNA1509_2365, RNA1509_51404, RNA815_6339.1}

Mlig455_061855 {REF} {Length: 1862} {Pfam: Carbohydrate/starch-binding module (family 21) [PF03370.15, score=64.0]; Starch/carbohydrate-binding module (family 53) [PF16760.7, score=27.0]} {Human: ENSG00000173281, PPP1R3B, protein phosphatase 1 regulatory subunit 3B, [Score=55.5, Expect=2e-08]; ENSG00000285343, PPP1R3B, protein phosphatase 1 regulatory subunit 3B, [Score=55.5, Expect=2e-08]} {Mouse: ENSMUSG00000072494, Ppp1r3e, protein phosphatase 1, regulatory subunit 3E, [Score=64.3, Expect=1e-11]} {Celegans: WBGene00019211, H18N23.2, Protein phosphatase 1 regulatory subunit, [Score=70.1, Expect=1e-13]} {Smed: dd_Smed_v6_1526_0_1, dd_Smed_v6_1526_0_1, [Score=57.8, Expect=1e-09]} {RNA1509_2365, RNA1509_39538, RNA1509_59849} {RNA1310_15793, RNA1509_39538, RNA1509_59849} {RNA1509_39538, RNA1509_59849, RNA815_6339.1}

Mlig455_061863 {REF} {Length: 1748} {Pfam: Carbohydrate/starch-binding module (family 21) [PF03370.15, score=58.7]; Starch/carbohydrate-binding module (family 53) [PF16760.7, score=27.1]} {Human: ENSG00000285343, PPP1R3B, protein phosphatase 1 regulatory subunit 3B, [Score=51.6, Expect=4e-07]; ENSG00000173281, PPP1R3B, protein phosphatase 1 regulatory subunit 3B, [Score=51.6, Expect=4e-07]} {Mouse: ENSMUSG00000072494, Ppp1r3e, protein phosphatase 1, regulatory subunit 3E, [Score=64.7, Expect=9e-12]} {Celegans: WBGene00019211, H18N23.2, Protein phosphatase 1 regulatory subunit, [Score=60.8, Expect=1e-10]} {Smed: dd_Smed_v6_1526_0_1, dd_Smed_v6_1526_0_1, [Score=54.3, Expect=1e-08]} {RNA1509_2365} {RNA1310_15793} {RNA815_6339.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA