TomoSeq data search

Data search

Results for MligTC455_35080

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_35080

257

5.36

Mlig455_007309, Mlig455_048943

Neo: -

Age: -

Region-enriched R4: 3.389/0.00198

RAB7A

Mlig455_007309 {REF} {Length: 846} {Pfam: Ras family [PF00071.24, score=32.7]} {Human: ENSG00000075785, RAB7A, RAB7A, member RAS oncogene family, [Score=53.5, Expect=4e-09]; ENSG00000276600, RAB7B, RAB7B, member RAS oncogene family, [Score=53.5, Expect=4e-09]} {Mouse: ENSMUSG00000052688, Rab7b, RAB7B, member RAS oncogene family, [Score=53.5, Expect=3e-09]; ENSMUSG00000079477, Rab7, RAB7, member RAS oncogene family, [Score=53.5, Expect=3e-09]} {Dmel: FBgn0015795, Rab7, [Score=55.1, Expect=5e-10]} {Celegans: WBGene00004271, rab-7, RAB family, [Score=55.8, Expect=2e-10]} {Smed: dd_Smed_v6_491_0_1, dd_Smed_v6_491_0_1, [Score=55.1, Expect=3e-10]} {RNA1509_46704} {RNA1310_32581} {RNA815_37374}

Mlig455_048943 {REF} {Length: 1097} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=134.7]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=87.7]; ADP-ribosylation factor family [PF00025.23, score=47.8]; Elongation factor Tu GTP binding domain [PF00009.29, score=24.0]; 50S ribosome-binding GTPase [PF01926.25, score=21.1]; Gtr1/RagA G protein conserved region [PF04670.14, score=18.9]} {Human: ENSG00000075785, RAB7A, RAB7A, member RAS oncogene family, [Score=145, Expect=3e-43]} {Mouse: ENSMUSG00000079477, Rab7, RAB7, member RAS oncogene family, [Score=145, Expect=2e-43]} {Dmel: FBgn0015795, Rab7, [Score=142, Expect=3e-42]} {Celegans: WBGene00004271, rab-7, RAB family, [Score=145, Expect=1e-43]} {Smed: dd_Smed_v6_491_0_1, dd_Smed_v6_491_0_1, [Score=146, Expect=4e-44]} {RNA1509_46704} {RNA1310_32581} {RNA815_37374}

Cumulative graph for MligTC455_35080

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-4.704	3.054	0.99963	1.00000
RegionR2	0.379	3.054	0.62297	0.96613
RegionR3	1.184	3.054	0.24899	0.79264
RegionR4	3.389	3.054	0.00013	0.00198
RegionR5	1.845	3.054	0.04165	0.16415
RegionR6	1.747	3.054	0.07084	0.49553
RegionR7	1.621	3.054	0.15327	0.72534
RegionR8	-5.461	3.054	0.99988	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-0.646	3.054	1.00000	1.00000
RegenerationR2	0.077	3.054	0.88960	1.00000
RegenerationR3	-0.387	3.054	0.52578	0.86967
RegenerationR4	-1.004	3.054	0.08843	0.46654
RegenerationR5	0.07	3.054	0.90364	1.00000
RegenerationR6	-0.656	3.054	0.28599	0.63605
RegenerationBL	2.372	3.054	0.04480	0.24221
RegenerationTP	1.997	3.054	0.31120	0.75573

Genes with expression patterns similar to MligTC455_35080

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_35080	257	5.36	Mlig455_007309, Mlig455_048943	Neo: - Age: - Region-enriched R4: 3.389/0.00198	RAB7A	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_007309 {REF} {Length: 846} {Pfam: Ras family [PF00071.24, score=32.7]} {Human: ENSG00000075785, RAB7A, RAB7A, member RAS oncogene family, [Score=53.5, Expect=4e-09]; ENSG00000276600, RAB7B, RAB7B, member RAS oncogene family, [Score=53.5, Expect=4e-09]} {Mouse: ENSMUSG00000052688, Rab7b, RAB7B, member RAS oncogene family, [Score=53.5, Expect=3e-09]; ENSMUSG00000079477, Rab7, RAB7, member RAS oncogene family, [Score=53.5, Expect=3e-09]} {Dmel: FBgn0015795, Rab7, [Score=55.1, Expect=5e-10]} {Celegans: WBGene00004271, rab-7, RAB family, [Score=55.8, Expect=2e-10]} {Smed: dd_Smed_v6_491_0_1, dd_Smed_v6_491_0_1, [Score=55.1, Expect=3e-10]} {RNA1509_46704} {RNA1310_32581} {RNA815_37374} Mlig455_048943 {REF} {Length: 1097} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=134.7]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=87.7]; ADP-ribosylation factor family [PF00025.23, score=47.8]; Elongation factor Tu GTP binding domain [PF00009.29, score=24.0]; 50S ribosome-binding GTPase [PF01926.25, score=21.1]; Gtr1/RagA G protein conserved region [PF04670.14, score=18.9]} {Human: ENSG00000075785, RAB7A, RAB7A, member RAS oncogene family, [Score=145, Expect=3e-43]} {Mouse: ENSMUSG00000079477, Rab7, RAB7, member RAS oncogene family, [Score=145, Expect=2e-43]} {Dmel: FBgn0015795, Rab7, [Score=142, Expect=3e-42]} {Celegans: WBGene00004271, rab-7, RAB family, [Score=145, Expect=1e-43]} {Smed: dd_Smed_v6_491_0_1, dd_Smed_v6_491_0_1, [Score=146, Expect=4e-44]} {RNA1509_46704} {RNA1310_32581} {RNA815_37374}
2.	MligTC455_51991	711	14.81	Mlig455_035125	Neo: - Age: - Region-enriched R4: 2.890/0.00215 Region-enriched R3: 2.391/0.00933 Region-enriched R5: 2.051/0.01263	FTH1	0.958	-	-	-	-	0.958	-	Mlig455_035125 {REF} {Length: 2662} {Pfam: Ferritin-like domain [PF00210.26, score=101.1]} {Human: ENSG00000167996, FTH1, ferritin heavy chain 1, [Score=124, Expect=1e-35]} {Mouse: ENSMUSG00000024510, Ftmt, ferritin mitochondrial, [Score=119, Expect=3e-33]; ENSMUSG00000024661, Fth1, ferritin heavy polypeptide 1, [Score=117, Expect=4e-33]} {Dmel: FBgn0030449, Fer3HCH, Ferritin 3 heavy chain homologue, [Score=110, Expect=3e-30]} {Celegans: WBGene00001501, ftn-2, Ferritin, [Score=124, Expect=3e-36]} {Smed: dd_Smed_v6_3974_0_1, dd_Smed_v6_3974_0_1, [Score=130, Expect=8e-39]} {RNA1509_33740, RNA1509_53079} {RNA1310_31876, RNA1509_33740, RNA1509_53079} {RNA1509_33740, RNA1509_53079, RNA815_13698.1}
3.	MligTC455_44703	580	12.09	Mlig455_040391, Mlig455_040397	Neo: - Age: logFC(26M/2M)=0.510	MLF2	0.956	-	-	-	-	0.956	-	Mlig455_040391 {REF} {Length: 1917} {Pfam: Myelodysplasia-myeloid leukemia factor 1-interacting protein [PF10248.11, score=119.4]} {Human: ENSG00000089693, MLF2, myeloid leukemia factor 2, [Score=89.4, Expect=3e-20]; ENSG00000178053, MLF1, myeloid leukemia factor 1, [Score=87.0, Expect=2e-19]} {Mouse: ENSMUSG00000048416, Mlf1, myeloid leukemia factor 1, [Score=90.9, Expect=9e-21]; ENSMUSG00000030120, Mlf2, myeloid leukemia factor 2, [Score=90.9, Expect=5e-21]} {Dmel: FBgn0034051, Mlf, Myelodysplasia/myeloid leukemia factor, [Score=91.3, Expect=3e-21]} {Smed: dd_Smed_v6_4787_0_1, dd_Smed_v6_4787_0_1, [Score=100, Expect=7e-25]} {RNA1509_25069} {RNA1310_19984} {RNA815_19430} Mlig455_040397 {REF} {Length: 1161} {Pfam: Myelodysplasia-myeloid leukemia factor 1-interacting protein [PF10248.11, score=124.4]} {Human: ENSG00000089693, MLF2, myeloid leukemia factor 2, [Score=88.6, Expect=3e-21]; ENSG00000178053, MLF1, myeloid leukemia factor 1, [Score=87.0, Expect=2e-20]} {Mouse: ENSMUSG00000030120, Mlf2, myeloid leukemia factor 2, [Score=90.1, Expect=7e-22]; ENSMUSG00000048416, Mlf1, myeloid leukemia factor 1, [Score=88.6, Expect=3e-21]} {Dmel: FBgn0034051, Mlf, Myelodysplasia/myeloid leukemia factor, [Score=90.9, Expect=4e-22]} {Smed: dd_Smed_v6_4787_0_1, dd_Smed_v6_4787_0_1, [Score=99.0, Expect=1e-25]} {RNA1509_25069} {RNA1310_19984} {RNA815_33445.2}
4.	MligTC455_42754	591	12.31	Mlig455_054975	Neo: - Age: logFC(26M/2M)=0.602 Region-enriched R5: 1.231/0.00919		0.955	-	-	-	-	-	0.955	Mlig455_054975 {REF} {Length: 1228} {RNA1509_4801} {RNA1310_4176} {RNA815_611.1}
5.	MligTC455_48477	1292	26.92	Mlig455_053235, Mlig455_066374, Mlig455_067867	Neo: - Age: logFC(26M/2M)=-0.325	USP40	0.953	-	-	-	0.953	-	-	Mlig455_053235 {REF} {Length: 5648} {RNA1509_19410} {RNA1310_1195.2} {RNA815_1416} Mlig455_066374 {REF} {Length: 5075} {Pfam: Ubiquitin carboxyl-terminal hydrolase [PF00443.31, score=136.3]; Ubiquitin carboxyl-terminal hydrolase [PF13423.8, score=47.7]} {Human: ENSG00000085982, USP40, ubiquitin specific peptidase 40, [Score=261, Expect=9e-71]} {Mouse: ENSMUSG00000005501, Usp40, ubiquitin specific peptidase 40, [Score=234, Expect=3e-62]} {Dmel: FBgn0016756, Usp47, Ubiquitin specific protease 47, [Score=194, Expect=8e-50]} {Celegans: WBGene00011507, T05H10.1, Ubiquitin carboxyl-terminal hydrolase, [RH, Score=179, Expect=4e-45]} {Smed: dd_Smed_v6_1847_0_2, dd_Smed_v6_1847_0_2, [Score=152, Expect=6e-37]} {RNA1509_19410} {RNA1310_1195.1, RNA1509_19410} {RNA1509_19410, RNA815_1416} Mlig455_067867 {REF} {Length: 5189} {Pfam: Ubiquitin carboxyl-terminal hydrolase [PF00443.31, score=136.6]; Ubiquitin carboxyl-terminal hydrolase [PF13423.8, score=47.8]} {Human: ENSG00000085982, USP40, ubiquitin specific peptidase 40, [Score=261, Expect=2e-70]} {Mouse: ENSMUSG00000005501, Usp40, ubiquitin specific peptidase 40, [Score=233, Expect=4e-62]} {Dmel: FBgn0016756, Usp47, Ubiquitin specific protease 47, [Score=193, Expect=2e-49]} {Celegans: WBGene00011507, T05H10.1, Ubiquitin carboxyl-terminal hydrolase, [RH, Score=179, Expect=5e-45]} {Smed: dd_Smed_v6_1847_0_1, dd_Smed_v6_1847_0_1, [Score=152, Expect=7e-37]} {RNA1509_19410} {RNA1310_1195.1} {RNA815_1416}
6.	MligTC455_48109	292	6.08	Mlig455_005194	Neo: - Age: - Region-enriched R3: 2.722/0.00858 Region-enriched R4: 2.662/0.01642 Region-enriched R5: 2.327/0.01028	SLC47A2	0.951	-	-	-	-	0.951	-	Mlig455_005194 {REF} {Length: 2871} {Pfam: MatE [PF01554.20, score=165.6]; Polysaccharide biosynthesis C-terminal domain [PF14667.8, score=29.5]} {Human: ENSG00000180638, SLC47A2, solute carrier family 47 member 2, [Score=292, Expect=3e-90]; ENSG00000142494, SLC47A1, solute carrier family 47 member 1, [Score=280, Expect=2e-85]} {Mouse: ENSMUSG00000010122, Slc47a1, solute carrier family 47, member 1, [Score=290, Expect=1e-89]; ENSMUSG00000069855, Slc47a2, solute carrier family 47, member 2, [Score=280, Expect=8e-86]} {Smed: dd_Smed_v6_11376_0_1, dd_Smed_v6_11376_0_1, [RH, Score=434, Expect=1e-145]} {RNA1509_14042} {RNA1310_8224.1, RNA1509_14042} {RNA1509_14042, RNA815_3210}
7.	MligTC455_24340	11313	235.69	Mlig455_027805	Neo: - Age: Down-Up-Up, logFC(26M/2M)=0.296	RPS8	0.95	-	-	-	-	0.950	-	Mlig455_027805 {REF} {Length: 875} {TRANSSPLICED} {Pfam: Ribosomal protein S8e [PF01201.24, score=170.3]} {Human: ENSG00000142937, RPS8, ribosomal protein S8, [RH, Score=259, Expect=1e-87]} {Mouse: ENSMUSG00000047675, Rps8, ribosomal protein S8, [RH, Score=259, Expect=9e-88]} {Dmel: FBgn0039713, RpS8, Ribosomal protein S8, [RH, Score=270, Expect=2e-92]} {Celegans: WBGene00004477, rps-8, 40S ribosomal protein S8, [RH, Score=250, Expect=2e-84]} {Smed: dd_Smed_v6_156_0_1, dd_Smed_v6_156_0_1, [RH, Score=238, Expect=9e-80]} {RNA1509_13382, RNA1509_1411, RNA1509_1736, RNA1509_5676} {RNA1310_40542, RNA1509_13382, RNA1509_1411, RNA1509_1736, RNA1509_5676} {RNA1509_13382, RNA1509_1411, RNA1509_1736, RNA1509_5676, RNA815_18150}
8.	MligTC455_43354	268	5.59	Mlig455_058155	Neo: - Age: Down-Up-Up		0.95	-	-	-	0.950	-	-	Mlig455_058155 {REF} {Length: 2698} {Smed: dd_Smed_v6_9265_0_1, dd_Smed_v6_9265_0_1, [RH, Score=110, Expect=3e-27]} {RNA1509_52409, RNA1509_59769} {RNA1310_21358, RNA1509_52409} {RNA1509_52409, RNA815_21652}

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