TomoSeq data search

Data search

Results for MligTC455_35120

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_35120

861

17.93

Mlig455_032816

Neo: -

Age: -

Region-enriched R8: 1.978/0.01587

HOXD11

Mlig455_032816 {REF} {Length: 4606} {Pfam: Homeodomain [PF00046.31, score=70.5]} {Human: ENSG00000128713, HOXD11, homeobox D11, [RH, Score=94.0, Expect=2e-20]; ENSG00000253293, HOXA10, homeobox A10, [RH, Score=93.2, Expect=8e-20]; ENSG00000123407, HOXC12, homeobox C12, [RH, Score=92.0, Expect=3e-20]; ENSG00000128710, HOXD10, homeobox D10, [RH, Score=90.1, Expect=4e-19]; ENSG00000123388, HOXC11, homeobox C11, [RH, Score=89.7, Expect=3e-19]; ENSG00000180818, HOXC10, homeobox C10, [RH, Score=89.7, Expect=5e-19]; ENSG00000078399, HOXA9, homeobox A9, [RH, Score=89.4, Expect=2e-19]} {Mouse: ENSMUSG00000000938, Hoxa10, homeobox A10, [RH, Score=93.6, Expect=4e-20]; ENSMUSG00000042499, Hoxd11, homeobox D11, [RH, Score=92.4, Expect=4e-20]; ENSMUSG00000050328, Hoxc12, homeobox C12, [RH, Score=91.7, Expect=3e-20]; ENSMUSG00000050368, Hoxd10, homeobox D10, [RH, Score=90.1, Expect=3e-19]; ENSMUSG00000001823, Hoxd12, homeobox D12, [RH, Score=89.7, Expect=1e-19]; ENSMUSG00000038227, Hoxa9, homeobox A9, [RH, Score=89.4, Expect=1e-19]; ENSMUSG00000001656, Hoxc11, homeobox C11, [RH, Score=89.4, Expect=3e-19]; ENSMUSG00000022484, Hoxc10, homeobox C10, [RH, Score=89.4, Expect=4e-19]; ENSMUSG00000020875, Hoxb9, homeobox B9, [RH, Score=89.0, Expect=1e-19]} {Dmel: FBgn0000015, Abd-B, Abdominal B, [RH, Score=100, Expect=2e-22]} {Celegans: WBGene00004024, php-3, Posterior Hox gene Paralog, [RH, Score=102, Expect=3e-24]} {Smed: dd_Smed_v6_9061_0_1, dd_Smed_v6_9061_0_1, [RH, Score=130, Expect=2e-33]} {RNA1509_60101} {RNA1310_15410.1, RNA1509_60101} {RNA1509_60101, RNA815_14240.2}

Cumulative graph for MligTC455_35120

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-1.08	4.228	0.43920	1.00000
RegionR2	-1.357	4.228	0.02310	0.16848
RegionR3	-0.457	4.228	0.36902	0.90420
RegionR4	0.616	4.228	0.28715	0.59677
RegionR5	-0.741	4.228	0.15607	0.41404
RegionR6	0.246	4.228	0.60374	1.00000
RegionR7	0.796	4.228	0.12886	0.67578
RegionR8	1.978	4.228	0.00023	0.01587

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	0.495	4.228	0.78554	1.00000
RegenerationR2	0.127	4.228	0.82178	0.99544
RegenerationR3	-0.049	4.228	0.93136	1.00000
RegenerationR4	-0.149	4.228	0.79240	0.98457
RegenerationR5	0.38	4.228	0.49916	0.85795
RegenerationR6	0.319	4.228	0.56445	0.84844
RegenerationBL	-0.018	4.228	0.97060	1.00000
RegenerationTP	-1.353	4.228	0.02069	0.24661

Genes with expression patterns similar to MligTC455_35120

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_35120	861	17.93	Mlig455_032816	Neo: - Age: - Region-enriched R8: 1.978/0.01587	HOXD11	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_032816 {REF} {Length: 4606} {Pfam: Homeodomain [PF00046.31, score=70.5]} {Human: ENSG00000128713, HOXD11, homeobox D11, [RH, Score=94.0, Expect=2e-20]; ENSG00000253293, HOXA10, homeobox A10, [RH, Score=93.2, Expect=8e-20]; ENSG00000123407, HOXC12, homeobox C12, [RH, Score=92.0, Expect=3e-20]; ENSG00000128710, HOXD10, homeobox D10, [RH, Score=90.1, Expect=4e-19]; ENSG00000123388, HOXC11, homeobox C11, [RH, Score=89.7, Expect=3e-19]; ENSG00000180818, HOXC10, homeobox C10, [RH, Score=89.7, Expect=5e-19]; ENSG00000078399, HOXA9, homeobox A9, [RH, Score=89.4, Expect=2e-19]} {Mouse: ENSMUSG00000000938, Hoxa10, homeobox A10, [RH, Score=93.6, Expect=4e-20]; ENSMUSG00000042499, Hoxd11, homeobox D11, [RH, Score=92.4, Expect=4e-20]; ENSMUSG00000050328, Hoxc12, homeobox C12, [RH, Score=91.7, Expect=3e-20]; ENSMUSG00000050368, Hoxd10, homeobox D10, [RH, Score=90.1, Expect=3e-19]; ENSMUSG00000001823, Hoxd12, homeobox D12, [RH, Score=89.7, Expect=1e-19]; ENSMUSG00000038227, Hoxa9, homeobox A9, [RH, Score=89.4, Expect=1e-19]; ENSMUSG00000001656, Hoxc11, homeobox C11, [RH, Score=89.4, Expect=3e-19]; ENSMUSG00000022484, Hoxc10, homeobox C10, [RH, Score=89.4, Expect=4e-19]; ENSMUSG00000020875, Hoxb9, homeobox B9, [RH, Score=89.0, Expect=1e-19]} {Dmel: FBgn0000015, Abd-B, Abdominal B, [RH, Score=100, Expect=2e-22]} {Celegans: WBGene00004024, php-3, Posterior Hox gene Paralog, [RH, Score=102, Expect=3e-24]} {Smed: dd_Smed_v6_9061_0_1, dd_Smed_v6_9061_0_1, [RH, Score=130, Expect=2e-33]} {RNA1509_60101} {RNA1310_15410.1, RNA1509_60101} {RNA1509_60101, RNA815_14240.2}
2.	MligTC455_41788	2241	46.68	Mlig455_062584	Neo: Int S/G2/M Age: -	HNRNPU	1.776	-	-	-	0.953	0.823	-	Mlig455_062584 {REF} {Length: 4700} {Pfam: AAA domain [PF13671.8, score=65.4]; SAP domain [PF02037.29, score=41.0]; SPRY domain [PF00622.30, score=36.9]} {Human: ENSG00000153187, HNRNPU, heterogeneous nuclear ribonucleoprotein U, [Score=231, Expect=2e-62]} {Mouse: ENSMUSG00000111145, Hnrnpu, heterogeneous nuclear ribonucleoprotein U, [Score=233, Expect=2e-63]; ENSMUSG00000039630, Hnrnpu, heterogeneous nuclear ribonucleoprotein U, [Score=233, Expect=2e-63]} {Dmel: FBgn0050122, CG30122, [Score=145, Expect=1e-34]} {Celegans: WBGene00012769, hrpu-1, Heterogeneous nuclear RibonucleoProtein U, [Score=125, Expect=5e-29]} {Smed: dd_Smed_v6_1485_0_1, dd_Smed_v6_1485_0_1, [Score=264, Expect=3e-72]} {RNA1509_16487, RNA1509_2596, RNA1509_47282, RNA1509_57980} {RNA1310_1119, RNA1509_16487, RNA1509_2596, RNA1509_47282, RNA1509_57980} {RNA1509_16487, RNA1509_2596, RNA1509_47282, RNA1509_57980, RNA815_630.1}
3.	MligTC455_43197	2985	62.18	Mlig455_005091, Mlig455_005219	Neo: - Age: - Regeneration-upregulated BL: 1.707 Regeneration-enriched BL: 1.707	SMARCD1	1.755	-	-	-	0.950	0.805	-	Mlig455_005091 {REF} {Length: 2227} {Pfam: SWIB/MDM2 domain [PF02201.20, score=55.0]} {Human: ENSG00000066117, SMARCD1, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, [RH, Score=491, Expect=7e-170]} {Mouse: ENSMUSG00000023018, Smarcd1, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, [RH, Score=491, Expect=9e-170]} {Dmel: FBgn0025463, Bap60, Brahma associated protein 60kD, [RH, Score=473, Expect=3e-163]} {Celegans: WBGene00044072, ham-3, [RH, Score=420, Expect=2e-143]} {Smed: dd_Smed_v6_3916_0_1, dd_Smed_v6_3916_0_1, [RH, Score=429, Expect=5e-147]} {RNA1509_5497} {RNA1310_11706, RNA1509_5497} {RNA1509_5497, RNA815_6713} Mlig455_005219 {REF} {Length: 2215} {TRANSSPLICED} {Pfam: SWIB/MDM2 domain [PF02201.20, score=55.0]} {Human: ENSG00000066117, SMARCD1, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, [RH, Score=491, Expect=7e-170]} {Mouse: ENSMUSG00000023018, Smarcd1, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, [RH, Score=491, Expect=9e-170]} {Dmel: FBgn0025463, Bap60, Brahma associated protein 60kD, [RH, Score=473, Expect=3e-163]} {Celegans: WBGene00044072, ham-3, [RH, Score=420, Expect=2e-143]} {Smed: dd_Smed_v6_3916_0_1, dd_Smed_v6_3916_0_1, [RH, Score=429, Expect=5e-147]} {RNA1509_5497} {RNA1310_11706} {RNA815_6713}
4.	MligTC455_48089	622	12.97	Mlig455_004933	Neo: - Age: -	CTDSPL2	0.97	-	-	-	-	0.970	-	Mlig455_004933 {REF} {Length: 5044} {TRANSSPLICED} {Pfam: NLI interacting factor-like phosphatase [PF03031.20, score=182.6]} {Human: ENSG00000137770, CTDSPL2, CTD small phosphatase like 2, [RH, Score=274, Expect=2e-86]} {Mouse: ENSMUSG00000033411, Ctdspl2, CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2, [RH, Score=273, Expect=2e-86]} {Dmel: FBgn0036556, CG5830, [Score=146, Expect=9e-40]} {Celegans: WBGene00021629, scpl-3, CTD small phosphatase-like protein 3, [RH, Score=224, Expect=9e-70]} {Smed: dd_Smed_v6_11089_0_1, dd_Smed_v6_11089_0_1, [RH, Score=252, Expect=7e-80]} {RNA1509_14936, RNA1509_27164} {RNA1310_16204.2, RNA1509_27164} {RNA1509_27164, RNA815_5952}
5.	MligTC455_37688	246	5.12	Mlig455_059640	Neo: - Age: Down-Up-Down		0.962	-	-	-	0.962	-	-	Mlig455_059640 {REF} {Length: 2286} {NoTransDecoderORF} {RNA1509_41398, RNA1509_47923} {RNA1310_42251.1, RNA1509_47923} {RNA1509_47923, RNA815_43706}
6.	MligTC455_33210	1336	27.84	Mlig455_061465, Mlig455_061476	Neo: Int S/G2/M Age: - Region-enriched R5: 1.230/0.00295	NFYA	0.954	-	-	-	0.954	-	-	Mlig455_061465 {REF} {Length: 2055} {TRANSSPLICED} {Pfam: CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B [PF02045.17, score=98.3]} {Human: ENSG00000001167, NFYA, nuclear transcription factor Y subunit alpha, [RH, Score=132, Expect=3e-35]} {Mouse: ENSMUSG00000023994, Nfya, nuclear transcription factor-Y alpha, [RH, Score=132, Expect=2e-35]; ENSMUSG00000115906, Nfya, nuclear transcription factor-Y alpha, [RH, Score=132, Expect=2e-35]} {Dmel: FBgn0035993, Nf-YA, Nuclear factor Y-box A, [RH, Score=108, Expect=3e-26]} {Celegans: WBGene00011614, nfya-1, Nuclear transcription Factor Y, A (Alpha) subunit, [RH, Score=84.0, Expect=1e-17]} {Smed: dd_Smed_v6_8585_0_1, dd_Smed_v6_8585_0_1, [RH, Score=134, Expect=2e-38]} {RNA1509_18506} {RNA1310_9328, RNA1509_18506} {RNA1509_18506, RNA815_12973} Mlig455_061476 {REF} {Length: 2039} {TRANSSPLICED} {Pfam: CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B [PF02045.17, score=98.3]} {Human: ENSG00000001167, NFYA, nuclear transcription factor Y subunit alpha, [RH, Score=132, Expect=3e-35]} {Mouse: ENSMUSG00000115906, Nfya, nuclear transcription factor-Y alpha, [RH, Score=132, Expect=2e-35]; ENSMUSG00000023994, Nfya, nuclear transcription factor-Y alpha, [RH, Score=132, Expect=2e-35]} {Dmel: FBgn0035993, Nf-YA, Nuclear factor Y-box A, [RH, Score=108, Expect=3e-26]} {Celegans: WBGene00011614, nfya-1, Nuclear transcription Factor Y, A (Alpha) subunit, [RH, Score=83.6, Expect=1e-17]} {Smed: dd_Smed_v6_8585_0_1, dd_Smed_v6_8585_0_1, [RH, Score=132, Expect=1e-37]} {RNA1509_18506} {RNA1310_10707} {RNA815_12973}

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