TomoSeq data search

Data search

Results for MligTC455_35507

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_35507	211	4.40	Mlig455_044318	Neo: - Age: Up-Up-Down	RDH14	Mlig455_044318 {REF} {Length: 2583} {TRANSSPLICED} {Pfam: short chain dehydrogenase [PF00106.27, score=92.4]; Enoyl-(Acyl carrier protein) reductase [PF13561.8, score=55.3]; KR domain [PF08659.12, score=18.9]} {Human: ENSG00000240857, RDH14, retinol dehydrogenase 14, [RH, Score=211, Expect=1e-65]; ENSG00000139988, RDH12, retinol dehydrogenase 12, [RH, Score=203, Expect=8e-63]} {Mouse: ENSMUSG00000020621, Rdh14, retinol dehydrogenase 14 (all-trans and 9-cis), [RH, Score=213, Expect=1e-66]} {Dmel: FBgn0033205, CG2064, [RH, Score=207, Expect=1e-64]} {Celegans: WBGene00000985, dhs-22, DeHydrogenases, Short chain, [RH, Score=141, Expect=5e-39]} {Smed: dd_Smed_v6_2096_0_1, dd_Smed_v6_2096_0_1, [RH, Score=199, Expect=1e-61]} {RNA1509_36426} {RNA1310_24967} {RNA815_10413.1}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_35507

211

4.40

Mlig455_044318

Neo: -

Age: Up-Up-Down

RDH14

Mlig455_044318 {REF} {Length: 2583} {TRANSSPLICED} {Pfam: short chain dehydrogenase [PF00106.27, score=92.4]; Enoyl-(Acyl carrier protein) reductase [PF13561.8, score=55.3]; KR domain [PF08659.12, score=18.9]} {Human: ENSG00000240857, RDH14, retinol dehydrogenase 14, [RH, Score=211, Expect=1e-65]; ENSG00000139988, RDH12, retinol dehydrogenase 12, [RH, Score=203, Expect=8e-63]} {Mouse: ENSMUSG00000020621, Rdh14, retinol dehydrogenase 14 (all-trans and 9-cis), [RH, Score=213, Expect=1e-66]} {Dmel: FBgn0033205, CG2064, [RH, Score=207, Expect=1e-64]} {Celegans: WBGene00000985, dhs-22, DeHydrogenases, Short chain, [RH, Score=141, Expect=5e-39]} {Smed: dd_Smed_v6_2096_0_1, dd_Smed_v6_2096_0_1, [RH, Score=199, Expect=1e-61]} {RNA1509_36426} {RNA1310_24967} {RNA815_10413.1}

Cumulative graph for MligTC455_35507

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-1.22	2.743	0.45049	1.00000
RegionR2	1.116	2.743	0.10979	0.40937
RegionR3	0.553	2.743	0.30520	0.84613
RegionR4	-0.687	2.743	0.27784	0.58464
RegionR5	0.301	2.743	0.53196	0.89481
RegionR6	0.434	2.743	0.44690	1.00000
RegionR7	0.899	2.743	0.19713	0.80406
RegionR8	-1.395	2.743	0.26927	0.89207

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-4.129	2.743	0.49402	1.00000
RegenerationR2	0.34	2.743	0.50715	0.87419
RegenerationR3	0.593	2.743	0.29913	0.73022
RegenerationR4	0.415	2.743	0.49006	0.86470
RegenerationR5	0.795	2.743	0.10253	0.48663
RegenerationR6	0.075	2.743	0.90925	1.00000
RegenerationBL	0.706	2.743	0.42652	0.79479
RegenerationTP	0.596	2.743	0.56237	0.93976

Genes with expression patterns similar to MligTC455_35507

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_35507	211	4.4	Mlig455_044318	Neo: - Age: Up-Up-Down	RDH14	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_044318 {REF} {Length: 2583} {TRANSSPLICED} {Pfam: short chain dehydrogenase [PF00106.27, score=92.4]; Enoyl-(Acyl carrier protein) reductase [PF13561.8, score=55.3]; KR domain [PF08659.12, score=18.9]} {Human: ENSG00000240857, RDH14, retinol dehydrogenase 14, [RH, Score=211, Expect=1e-65]; ENSG00000139988, RDH12, retinol dehydrogenase 12, [RH, Score=203, Expect=8e-63]} {Mouse: ENSMUSG00000020621, Rdh14, retinol dehydrogenase 14 (all-trans and 9-cis), [RH, Score=213, Expect=1e-66]} {Dmel: FBgn0033205, CG2064, [RH, Score=207, Expect=1e-64]} {Celegans: WBGene00000985, dhs-22, DeHydrogenases, Short chain, [RH, Score=141, Expect=5e-39]} {Smed: dd_Smed_v6_2096_0_1, dd_Smed_v6_2096_0_1, [RH, Score=199, Expect=1e-61]} {RNA1509_36426} {RNA1310_24967} {RNA815_10413.1}
2.	MligTC455_46378	582	12.12	Mlig455_040684	Neo: Int S/G2/M Age: Up-Down-Up, logFC(26M/2M)=0.474	COPS5	2.447	-	0.705	-	0.786	-	0.956	Mlig455_040684 {REF} {Length: 1700} {TRANSSPLICED} {Pfam: JAB1/Mov34/MPN/PAD-1 ubiquitin protease [PF01398.23, score=100.5]; Cop9 signalosome subunit 5 C-terminal domain [PF18323.3, score=41.9]; Prokaryotic homologs of the JAB domain [PF14464.8, score=20.9]} {Human: ENSG00000121022, COPS5, COP9 signalosome subunit 5, [RH, Score=383, Expect=4e-133]} {Mouse: ENSMUSG00000025917, Cops5, COP9 signalosome subunit 5, [RH, Score=383, Expect=3e-133]} {Dmel: FBgn0027053, CSN5, COP9 signalosome subunit 5, [RH, Score=401, Expect=1e-140]} {Celegans: WBGene00000817, csn-5, COP9 signalosome complex subunit 5, [RH, Score=344, Expect=1e-117]} {Smed: dd_Smed_v6_2781_0_1, dd_Smed_v6_2781_0_1, [RH, Score=355, Expect=2e-122]} {RNA1509_9443} {RNA1310_23567} {RNA815_13412}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Σ Spearman correlations

Int1

Int2

Int3

Reg1

Reg2

Reg3

Annotation

MligTC455_35507

211

4.4

Mlig455_044318

Neo: -

Age: Up-Up-Down

RDH14

1.000

MligTC455_46378

582

12.12

Mlig455_040684

Neo: Int S/G2/M

Age: Up-Down-Up, logFC(26M/2M)=0.474

COPS5

2.447

0.705

0.786

0.956

Mlig455_040684 {REF} {Length: 1700} {TRANSSPLICED} {Pfam: JAB1/Mov34/MPN/PAD-1 ubiquitin protease [PF01398.23, score=100.5]; Cop9 signalosome subunit 5 C-terminal domain [PF18323.3, score=41.9]; Prokaryotic homologs of the JAB domain [PF14464.8, score=20.9]} {Human: ENSG00000121022, COPS5, COP9 signalosome subunit 5, [RH, Score=383, Expect=4e-133]} {Mouse: ENSMUSG00000025917, Cops5, COP9 signalosome subunit 5, [RH, Score=383, Expect=3e-133]} {Dmel: FBgn0027053, CSN5, COP9 signalosome subunit 5, [RH, Score=401, Expect=1e-140]} {Celegans: WBGene00000817, csn-5, COP9 signalosome complex subunit 5, [RH, Score=344, Expect=1e-117]} {Smed: dd_Smed_v6_2781_0_1, dd_Smed_v6_2781_0_1, [RH, Score=355, Expect=2e-122]} {RNA1509_9443} {RNA1310_23567} {RNA815_13412}