TomoSeq data search

Data search

Results for MligTC455_35524

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_35524	6441	134.19	Mlig455_029691, Mlig455_034836	Neo: - Age: - Region-enriched R5: 1.195/0.00001	VKORC1L1	Mlig455_029691 {REF} {Length: 986} {TRANSSPLICED} {Pfam: Vitamin K epoxide reductase family [PF07884.16, score=72.6]} {Human: ENSG00000196715, VKORC1L1, vitamin K epoxide reductase complex subunit 1 like 1, [RH, Score=107, Expect=3e-29]} {Mouse: ENSMUSG00000066735, Vkorc1l1, vitamin K epoxide reductase complex, subunit 1-like 1, [RH, Score=108, Expect=6e-30]} {Dmel: FBgn0053544, Vkor, Vitamin-K epoxide reductase, [RH, Score=67.0, Expect=2e-14]} {Smed: dd_Smed_v6_12458_0_1, dd_Smed_v6_12458_0_1, [RH, Score=74.7, Expect=2e-17]} {RNA1509_7525} {RNA1310_22565.1} {RNA815_14017} Mlig455_034836 {REF} {Length: 1174} {TRANSSPLICED} {Pfam: Vitamin K epoxide reductase family [PF07884.16, score=72.8]} {Human: ENSG00000196715, VKORC1L1, vitamin K epoxide reductase complex subunit 1 like 1, [RH, Score=108, Expect=1e-29]} {Mouse: ENSMUSG00000066735, Vkorc1l1, vitamin K epoxide reductase complex, subunit 1-like 1, [RH, Score=108, Expect=4e-30]} {Dmel: FBgn0053544, Vkor, Vitamin-K epoxide reductase, [RH, Score=68.2, Expect=9e-15]} {Smed: dd_Smed_v6_12458_0_1, dd_Smed_v6_12458_0_1, [RH, Score=75.9, Expect=9e-18]} {RNA1509_27540, RNA1509_36900, RNA1509_7525, RNA1509_8563} {RNA1310_22565.1, RNA1509_27540, RNA1509_36900, RNA1509_8563} {RNA1509_27540, RNA1509_36900, RNA1509_8563, RNA815_14017}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_35524

6441

134.19

Mlig455_029691, Mlig455_034836

Neo: -

Age: -

Region-enriched R5: 1.195/0.00001

VKORC1L1

Mlig455_029691 {REF} {Length: 986} {TRANSSPLICED} {Pfam: Vitamin K epoxide reductase family [PF07884.16, score=72.6]} {Human: ENSG00000196715, VKORC1L1, vitamin K epoxide reductase complex subunit 1 like 1, [RH, Score=107, Expect=3e-29]} {Mouse: ENSMUSG00000066735, Vkorc1l1, vitamin K epoxide reductase complex, subunit 1-like 1, [RH, Score=108, Expect=6e-30]} {Dmel: FBgn0053544, Vkor, Vitamin-K epoxide reductase, [RH, Score=67.0, Expect=2e-14]} {Smed: dd_Smed_v6_12458_0_1, dd_Smed_v6_12458_0_1, [RH, Score=74.7, Expect=2e-17]} {RNA1509_7525} {RNA1310_22565.1} {RNA815_14017}

Mlig455_034836 {REF} {Length: 1174} {TRANSSPLICED} {Pfam: Vitamin K epoxide reductase family [PF07884.16, score=72.8]} {Human: ENSG00000196715, VKORC1L1, vitamin K epoxide reductase complex subunit 1 like 1, [RH, Score=108, Expect=1e-29]} {Mouse: ENSMUSG00000066735, Vkorc1l1, vitamin K epoxide reductase complex, subunit 1-like 1, [RH, Score=108, Expect=4e-30]} {Dmel: FBgn0053544, Vkor, Vitamin-K epoxide reductase, [RH, Score=68.2, Expect=9e-15]} {Smed: dd_Smed_v6_12458_0_1, dd_Smed_v6_12458_0_1, [RH, Score=75.9, Expect=9e-18]} {RNA1509_27540, RNA1509_36900, RNA1509_7525, RNA1509_8563} {RNA1310_22565.1, RNA1509_27540, RNA1509_36900, RNA1509_8563} {RNA1509_27540, RNA1509_36900, RNA1509_8563, RNA815_14017}

Cumulative graph for MligTC455_35524

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-0.767	7.179	0.11104	0.69232
RegionR2	-0.853	7.179	0.00554	0.06873
RegionR3	0.163	7.179	0.51660	1.00000
RegionR4	0.125	7.179	0.66872	0.96599
RegionR5	1.195	7.179	0.00000	0.00001
RegionR6	0.129	7.179	0.60888	1.00000
RegionR7	0.535	7.179	0.03787	0.37244
RegionR8	-0.526	7.179	0.10858	0.61349

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	0.376	7.179	0.52599	1.00000
RegenerationR2	-0.341	7.179	0.28940	0.73232
RegenerationR3	-0.15	7.179	0.64190	0.92573
RegenerationR4	-0.108	7.179	0.74046	0.96759
RegenerationR5	-0.625	7.179	0.04379	0.34332
RegenerationR6	-0.127	7.179	0.69315	0.92065
RegenerationBL	0.083	7.179	0.77832	1.00000
RegenerationTP	0.377	7.179	0.23223	0.67746

Genes with expression patterns similar to MligTC455_35524

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_35524	6441	134.19	Mlig455_029691, Mlig455_034836	Neo: - Age: - Region-enriched R5: 1.195/0.00001	VKORC1L1	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_029691 {REF} {Length: 986} {TRANSSPLICED} {Pfam: Vitamin K epoxide reductase family [PF07884.16, score=72.6]} {Human: ENSG00000196715, VKORC1L1, vitamin K epoxide reductase complex subunit 1 like 1, [RH, Score=107, Expect=3e-29]} {Mouse: ENSMUSG00000066735, Vkorc1l1, vitamin K epoxide reductase complex, subunit 1-like 1, [RH, Score=108, Expect=6e-30]} {Dmel: FBgn0053544, Vkor, Vitamin-K epoxide reductase, [RH, Score=67.0, Expect=2e-14]} {Smed: dd_Smed_v6_12458_0_1, dd_Smed_v6_12458_0_1, [RH, Score=74.7, Expect=2e-17]} {RNA1509_7525} {RNA1310_22565.1} {RNA815_14017} Mlig455_034836 {REF} {Length: 1174} {TRANSSPLICED} {Pfam: Vitamin K epoxide reductase family [PF07884.16, score=72.8]} {Human: ENSG00000196715, VKORC1L1, vitamin K epoxide reductase complex subunit 1 like 1, [RH, Score=108, Expect=1e-29]} {Mouse: ENSMUSG00000066735, Vkorc1l1, vitamin K epoxide reductase complex, subunit 1-like 1, [RH, Score=108, Expect=4e-30]} {Dmel: FBgn0053544, Vkor, Vitamin-K epoxide reductase, [RH, Score=68.2, Expect=9e-15]} {Smed: dd_Smed_v6_12458_0_1, dd_Smed_v6_12458_0_1, [RH, Score=75.9, Expect=9e-18]} {RNA1509_27540, RNA1509_36900, RNA1509_7525, RNA1509_8563} {RNA1310_22565.1, RNA1509_27540, RNA1509_36900, RNA1509_8563} {RNA1509_27540, RNA1509_36900, RNA1509_8563, RNA815_14017}
2.	MligTC455_30400	8067	168.05	Mlig455_048012	Neo: Irradiation Age: Down-Down-Up Region-specific R5: 1.701 Region-enriched R5: 1.333/0.00002	TUBB3	1.694	0.731	-	-	-	-	0.963	Mlig455_048012 {REF} {Length: 1858} {TRANSSPLICED} {Pfam: Tubulin/FtsZ family, GTPase domain [PF00091.27, score=235.7]; Tubulin C-terminal domain [PF03953.19, score=145.2]; Misato Segment II tubulin-like domain [PF10644.11, score=23.1]} {Human: ENSG00000258947, TUBB3, tubulin beta 3 class III, [RH, Score=836, Expect=0.0]; ENSG00000176014, TUBB6, tubulin beta 6 class V, [RH, Score=818, Expect=0.0]} {Mouse: ENSMUSG00000062380, Tubb3, tubulin, beta 3 class III, [RH, Score=835, Expect=0.0]; ENSMUSG00000001473, Tubb6, tubulin, beta 6 class V, [RH, Score=815, Expect=0.0]} {Dmel: FBgn0003889, betaTub85D, beta-Tubulin at 85D, [RH, Score=841, Expect=0.0]} {Celegans: WBGene00006538, tbb-4, Tubulin beta-4 chain, [RH, Score=858, Expect=0.0]} {Smed: dd_Smed_v6_83_0_1, dd_Smed_v6_83_0_1, [RH, Score=911, Expect=0.0]} {RNA1509_36248, RNA1509_5705} {RNA1310_15130.1, RNA1509_36248, RNA1509_5705} {RNA1509_36248, RNA1509_5705, RNA815_4202.2}
3.	MligTC455_42737	186	3.87	Mlig455_034935	Neo: - Age: Up-Down-Down	EGFLAM	0.951	-	-	-	0.951	-	-	Mlig455_034935 {REF} {Length: 6718} {Pfam: Laminin G domain [PF02210.26, score=150.7]; Laminin G domain [PF00054.25, score=144.6]; Concanavalin A-like lectin/glucanases superfamily [PF13385.8, score=36.8]; EGF-like domain [PF00008.29, score=22.4]} {Human: ENSG00000164318, EGFLAM, EGF like, fibronectin type III and laminin G domains, [Score=210, Expect=2e-56]} {Mouse: ENSMUSG00000042961, Egflam, EGF-like, fibronectin type III and laminin G domains, [Score=208, Expect=4e-56]} {Dmel: FBgn0034070, SP2353, [Score=183, Expect=1e-47]} {Celegans: WBGene00020581, T19D12.6, [RH, Score=68.6, Expect=1e-11]} {Smed: dd_Smed_v6_10946_0_2, dd_Smed_v6_10946_0_2, [Score=224, Expect=1e-62]} {RNA1509_25168} {RNA1310_18750.2} {RNA815_19872}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Σ Spearman correlations

Int1

Int2

Int3

Reg1

Reg2

Reg3

Annotation

MligTC455_35524

6441

134.19

Mlig455_029691, Mlig455_034836

Neo: -

Age: -

Region-enriched R5: 1.195/0.00001

VKORC1L1

1.000

MligTC455_30400

8067

168.05

Mlig455_048012

Neo: Irradiation

Age: Down-Down-Up

Region-specific R5: 1.701

Region-enriched R5: 1.333/0.00002

TUBB3

1.694

0.731

0.963

Mlig455_048012 {REF} {Length: 1858} {TRANSSPLICED} {Pfam: Tubulin/FtsZ family, GTPase domain [PF00091.27, score=235.7]; Tubulin C-terminal domain [PF03953.19, score=145.2]; Misato Segment II tubulin-like domain [PF10644.11, score=23.1]} {Human: ENSG00000258947, TUBB3, tubulin beta 3 class III, [RH, Score=836, Expect=0.0]; ENSG00000176014, TUBB6, tubulin beta 6 class V, [RH, Score=818, Expect=0.0]} {Mouse: ENSMUSG00000062380, Tubb3, tubulin, beta 3 class III, [RH, Score=835, Expect=0.0]; ENSMUSG00000001473, Tubb6, tubulin, beta 6 class V, [RH, Score=815, Expect=0.0]} {Dmel: FBgn0003889, betaTub85D, beta-Tubulin at 85D, [RH, Score=841, Expect=0.0]} {Celegans: WBGene00006538, tbb-4, Tubulin beta-4 chain, [RH, Score=858, Expect=0.0]} {Smed: dd_Smed_v6_83_0_1, dd_Smed_v6_83_0_1, [RH, Score=911, Expect=0.0]} {RNA1509_36248, RNA1509_5705} {RNA1310_15130.1, RNA1509_36248, RNA1509_5705} {RNA1509_36248, RNA1509_5705, RNA815_4202.2}

MligTC455_42737

186

3.87

Mlig455_034935

Neo: -

Age: Up-Down-Down

EGFLAM

0.951

Mlig455_034935 {REF} {Length: 6718} {Pfam: Laminin G domain [PF02210.26, score=150.7]; Laminin G domain [PF00054.25, score=144.6]; Concanavalin A-like lectin/glucanases superfamily [PF13385.8, score=36.8]; EGF-like domain [PF00008.29, score=22.4]} {Human: ENSG00000164318, EGFLAM, EGF like, fibronectin type III and laminin G domains, [Score=210, Expect=2e-56]} {Mouse: ENSMUSG00000042961, Egflam, EGF-like, fibronectin type III and laminin G domains, [Score=208, Expect=4e-56]} {Dmel: FBgn0034070, SP2353, [Score=183, Expect=1e-47]} {Celegans: WBGene00020581, T19D12.6, [RH, Score=68.6, Expect=1e-11]} {Smed: dd_Smed_v6_10946_0_2, dd_Smed_v6_10946_0_2, [Score=224, Expect=1e-62]} {RNA1509_25168} {RNA1310_18750.2} {RNA815_19872}