M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_35629

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_35629 20 0.42 Mlig455_062070, Mlig455_066212

Neo: -

Age: -

Mlig455_062070 {REF} {Length: 937} {NoTransDecoderORF} {RNA1310_130021} {RNA815_55226}

Mlig455_066212 {REF} {Length: 761} {NoTransDecoderORF} {RNA1310_130425}

Cumulative graph for MligTC455_35629

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.591 0.792 1.00000 1.00000
RegionR2 -0.794 0.792 0.99992 1.00000
RegionR3 0.24 0.792 0.99999 1.00000
RegionR4 0.817 0.792 1.00000 1.00000
RegionR5 0.597 0.792 1.00000 1.00000
RegionR6 0.042 0.792 0.99999 1.00000
RegionR7 -0.216 0.792 1.00000 1.00000
RegionR8 -0.095 0.792 0.99998 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.448 0.792 1.00000 1.00000
RegenerationR2 3.511 0.792 0.03035 0.28703
RegenerationR3 2.701 0.792 0.18621 0.62265
RegenerationR4 2.361 0.792 0.17560 0.61453
RegenerationR5 1.781 0.792 0.23011 0.66435
RegenerationR6 2.552 0.792 0.24856 0.59687
RegenerationBL -0.669 0.792 1.00000 1.00000
RegenerationTP 1.775 0.792 0.57759 0.94807


Genes with expression patterns similar to MligTC455_35629

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_35629 20 0.42 Mlig455_062070, Mlig455_066212

Neo: -

Age: -

 1 - - - - 1.000 -

Mlig455_062070 {REF} {Length: 937} {NoTransDecoderORF} {RNA1310_130021} {RNA815_55226}

Mlig455_066212 {REF} {Length: 761} {NoTransDecoderORF} {RNA1310_130425}
2. MligTC455_14698 87 1.81 Mlig455_016423, Mlig455_018959

Neo: -

Age: -

 0.99 - - - - 0.990 -

Mlig455_016423 {REF} {Length: 2126} {Pfam: Endonuclease-reverse transcriptase [PF14529.8, score=29.9]} {RNA1509_50390} {RNA1310_55547}

Mlig455_018959 {REF} {Length: 3176} {Pfam: Endonuclease-reverse transcriptase [PF14529.8, score=56.9]; RNase H [PF00075.26, score=47.4]; Endonuclease/Exonuclease/phosphatase family [PF03372.25, score=23.8]; PHD-finger [PF00628.31, score=20.1]} {RNA1509_50390} {RNA1310_33666, RNA1509_50390}
3. MligTC455_01844 19 0.39 Mlig455_018022

Neo: -

Age: -

 0.975 - - - - 0.975 - Mlig455_018022 {REF} {Length: 633} {Pfam: Protein of unknown function (DUF445) [PF04286.14, score=28.6]; EcsC protein family [PF12787.9, score=22.1]; Spore germination protein GerPC [PF10737.11, score=21.1]; Protein export membrane protein [PF02355.18, score=19.8]} {Mouse: ENSMUSG00000046056, Sbsn, suprabasin, [Score=53.1, Expect=4e-08]} {RNA1509_60122} {RNA1310_51739} {RNA815_33980}
4. MligTC455_08120 17 0.36 Mlig455_007635

Neo: -

Age: -

 0.971 - - - - 0.971 - Mlig455_007635 {REF} {Length: 1872} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=50.0]} {RNA1310_11435} {RNA815_31865}
5. MligTC455_52263 93 1.94 Mlig455_018235

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=1.051

 GIT2 0.969 - - - - 0.969 - Mlig455_018235 {REF} {Length: 3103} {Pfam: G protein-coupled receptor kinase-interacting protein 1 C term [PF12205.10, score=91.6]; Coiled-coil domain-containing protein 106 [PF15794.7, score=22.0]} {Human: ENSG00000139436, GIT2, GIT ArfGAP 2, [Score=81.3, Expect=1e-15]; ENSG00000108262, GIT1, GIT ArfGAP 1, [Score=78.2, Expect=1e-14]} {Mouse: ENSMUSG00000041890, Git2, G protein-coupled receptor kinase-interactor 2, [RH, Score=76.6, Expect=6e-15]} {RNA1509_17579} {RNA1310_2666.1} {RNA815_17899}
6. MligTC455_18444 177 3.69 Mlig455_000582, Mlig455_030377, Mlig455_033966

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.638

 0.966 - - - - 0.966 -

Mlig455_000582 {REF} {Length: 2058} {Smed: dd_Smed_v6_6823_0_2, dd_Smed_v6_6823_0_2, [Score=198, Expect=4e-57]} {RNA1310_26881}

Mlig455_030377 {REF} {Length: 1982} {Smed: dd_Smed_v6_6823_0_1, dd_Smed_v6_6823_0_1, [Score=161, Expect=1e-43]} {RNA1310_26881}

Mlig455_033966 {REF} {Length: 1779} {Smed: dd_Smed_v6_6823_0_1, dd_Smed_v6_6823_0_1, [Score=184, Expect=2e-52]} {RNA1310_26881}
7. MligTC455_22625 73 1.53 Mlig455_015676, Mlig455_062487

Neo: -

Age: -

 KCNK18 0.964 - - - - 0.964 -

Mlig455_015676 {REF} {Length: 3701} {Pfam: Ion channel [PF07885.18, score=113.7]; Ion transport protein [PF00520.33, score=26.1]} {Human: ENSG00000186795, KCNK18, potassium two pore domain channel subfamily K member 18, [Score=77.8, Expect=2e-14]} {Mouse: ENSMUSG00000040901, Kcnk18, potassium channel, subfamily K, member 18, [Score=73.9, Expect=2e-13]} {Dmel: FBgn0033257, sand, sandman, [Score=112, Expect=5e-26]} {Celegans: WBGene00010784, twk-48, TWiK family of potassium channels, [Score=125, Expect=1e-30]} {Smed: dd_Smed_v6_21895_0_1, dd_Smed_v6_21895_0_1, [RH, Score=183, Expect=9e-49]} {RNA1509_6916} {RNA1310_17515.1} {RNA815_8047}

Mlig455_062487 {REF} {Length: 3562} {Pfam: Ion channel [PF07885.18, score=113.9]; Ion transport protein [PF00520.33, score=26.3]} {Human: ENSG00000186795, KCNK18, potassium two pore domain channel subfamily K member 18, [Score=77.8, Expect=1e-14]} {Mouse: ENSMUSG00000040901, Kcnk18, potassium channel, subfamily K, member 18, [Score=74.3, Expect=2e-13]} {Dmel: FBgn0033257, sand, sandman, [Score=111, Expect=8e-26]} {Celegans: WBGene00010784, twk-48, TWiK family of potassium channels, [Score=125, Expect=8e-31]} {Smed: dd_Smed_v6_21895_0_1, dd_Smed_v6_21895_0_1, [RH, Score=182, Expect=1e-48]} {RNA1509_6916} {RNA1310_17515.1} {RNA815_8047}
8. MligTC455_25059 318 6.63 Mlig455_011858

Neo: -

Age: logFC(26M/2M)=-0.243

Regeneration-downregulated BL: -7.201

Regeneration-depleted BL: -7.201

 RASEF 0.963 - - - - 0.963 - Mlig455_011858 {REF} {Length: 4102} {Pfam: Ras family [PF00071.24, score=167.3]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=104.0]; ADP-ribosylation factor family [PF00025.23, score=55.2]; EF-hand domain pair [PF13499.8, score=42.0]; EF hand [PF00036.34, score=41.4]; EF-hand domain [PF13405.8, score=39.3]; 50S ribosome-binding GTPase [PF01926.25, score=35.1]; EF-hand domain pair [PF13833.8, score=33.0]; EF hand [PF13202.8, score=28.9]; Elongation factor Tu GTP binding domain [PF00009.29, score=25.9]; Gtr1/RagA G protein conserved region [PF04670.14, score=21.8]; Signal recognition particle receptor beta subunit [PF09439.12, score=21.8]} {Human: ENSG00000165105, RASEF, RAS and EF-hand domain containing, [RH, Score=221, Expect=9e-61]} {Mouse: ENSMUSG00000043003, Rasef, RAS and EF hand domain containing, [RH, Score=222, Expect=9e-63]} {Dmel: FBgn0285937, Rab1, [Score=145, Expect=2e-39]} {Celegans: WBGene00016344, rsef-1, Ras and EF-hand domain-containing protein homolog, [RH, Score=188, Expect=3e-50]} {Smed: dd_Smed_v6_4284_0_1, dd_Smed_v6_4284_0_1, [RH, Score=225, Expect=2e-62]} {RNA1509_21698} {RNA1310_2939.1, RNA1509_21698} {RNA1509_21698, RNA815_9067}
9. MligTC455_13332 49 1.01 Mlig455_052737

Neo: -

Age: -

 0.961 - - - - 0.961 - Mlig455_052737 {REF} {Length: 1866} {NoTransDecoderORF} {RNA1509_10728} {RNA1310_11306.1} {RNA815_28207}
10. MligTC455_50328 128 2.66 Mlig455_039843

Neo: -

Age: -

 SCNN1B 0.96 - - - - 0.960 - Mlig455_039843 {REF} {Length: 2793} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=206.6]} {Human: ENSG00000168447, SCNN1B, sodium channel epithelial 1 beta subunit, [Score=69.3, Expect=1e-11]} {Mouse: ENSMUSG00000000216, Scnn1g, sodium channel, nonvoltage-gated 1 gamma, [Score=58.9, Expect=1e-08]; ENSMUSG00000030873, Scnn1b, sodium channel, nonvoltage-gated 1 beta, [Score=57.4, Expect=4e-08]} {Celegans: WBGene00006832, unc-105, Degenerin-like protein unc-105, [Score=75.5, Expect=8e-14]} {Smed: dd_Smed_v6_23028_0_1, dd_Smed_v6_23028_0_1, [RH, Score=366, Expect=3e-118]} {RNA1509_37054} {RNA1310_10450, RNA1509_37054} {RNA1509_37054, RNA815_17111}
11. MligTC455_17723 358 7.45 Mlig455_001055

Neo: Irradiation

Age: -

 SLC20A1 0.959 - - - - 0.959 - Mlig455_001055 {REF} {Length: 3472} {Pfam: Phosphate transporter family [PF01384.22, score=448.5]} {Human: ENSG00000144136, SLC20A1, solute carrier family 20 member 1, [RH, Score=288, Expect=2e-88]; ENSG00000168575, SLC20A2, solute carrier family 20 member 2, [RH, Score=281, Expect=4e-86]} {Mouse: ENSMUSG00000027397, Slc20a1, solute carrier family 20, member 1, [RH, Score=286, Expect=1e-87]; ENSMUSG00000037656, Slc20a2, solute carrier family 20, member 2, [RH, Score=277, Expect=1e-84]} {Dmel: FBgn0260795, NaPi-III, Na[+]-dependent inorganic phosphate cotransporter type III, [RH, Score=275, Expect=9e-84]} {Celegans: WBGene00016739, pitr-1, Phosphate transporter, [RH, Score=409, Expect=3e-137]} {Smed: dd_Smed_v6_15197_0_1, dd_Smed_v6_15197_0_1, [RH, Score=521, Expect=0.0]} {RNA1509_41070, RNA1509_51244, RNA1509_52575, RNA1509_9080} {RNA1310_12086, RNA1509_41070, RNA1509_51244, RNA1509_52575, RNA1509_9080} {RNA1509_41070, RNA1509_51244, RNA1509_52575, RNA1509_9080, RNA815_4727}
12. MligTC455_16578 3729 77.69 Mlig455_006997, Mlig455_017994, Mlig455_069603

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.420

 SLC16A2 0.957 - - - - 0.957 -

Mlig455_006997 {REF} {Length: 3468} {Pfam: Major Facilitator Superfamily [PF07690.18, score=99.5]} {Human: ENSG00000147100, SLC16A2, solute carrier family 16 member 2, [RH, Score=251, Expect=4e-75]} {Mouse: ENSMUSG00000033965, Slc16a2, solute carrier family 16 (monocarboxylic acid transporters), member 2, [RH, Score=248, Expect=5e-74]; ENSMUSG00000019838, Slc16a10, solute carrier family 16 (monocarboxylic acid transporters), member 10, [RH, Score=246, Expect=8e-74]} {Dmel: FBgn0001296, kar, karmoisin, [RH, Score=266, Expect=9e-81]} {Celegans: WBGene00021227, mct-1, MonoCarboxylate Transporter family, [Score=76.6, Expect=2e-14]} {Smed: dd_Smed_v6_10147_0_7, dd_Smed_v6_10147_0_7, [Score=67.4, Expect=8e-12]} {RNA1509_6430} {RNA1310_7026} {RNA815_6290}

Mlig455_017994 {REF} {Length: 2893} {Pfam: Major Facilitator Superfamily [PF07690.18, score=99.5]} {Human: ENSG00000147100, SLC16A2, solute carrier family 16 member 2, [RH, Score=251, Expect=5e-75]} {Mouse: ENSMUSG00000033965, Slc16a2, solute carrier family 16 (monocarboxylic acid transporters), member 2, [RH, Score=248, Expect=5e-74]; ENSMUSG00000019838, Slc16a10, solute carrier family 16 (monocarboxylic acid transporters), member 10, [RH, Score=247, Expect=7e-74]} {Dmel: FBgn0001296, kar, karmoisin, [RH, Score=266, Expect=1e-80]} {Celegans: WBGene00015273, mct-2, MonoCarboxylate Transporter family, [Score=77.0, Expect=1e-14]} {Smed: dd_Smed_v6_10147_0_7, dd_Smed_v6_10147_0_7, [Score=67.4, Expect=7e-12]} {RNA1509_6430} {RNA1310_7026} {RNA815_6290}

Mlig455_069603 {REF} {Length: 2891} {Pfam: Major Facilitator Superfamily [PF07690.18, score=99.5]} {Human: ENSG00000147100, SLC16A2, solute carrier family 16 member 2, [RH, Score=251, Expect=4e-75]} {Mouse: ENSMUSG00000033965, Slc16a2, solute carrier family 16 (monocarboxylic acid transporters), member 2, [RH, Score=248, Expect=5e-74]; ENSMUSG00000019838, Slc16a10, solute carrier family 16 (monocarboxylic acid transporters), member 10, [RH, Score=246, Expect=8e-74]} {Dmel: FBgn0001296, kar, karmoisin, [RH, Score=266, Expect=9e-81]} {Celegans: WBGene00021227, mct-1, MonoCarboxylate Transporter family, [Score=76.6, Expect=2e-14]} {Smed: dd_Smed_v6_10147_0_7, dd_Smed_v6_10147_0_7, [Score=67.4, Expect=8e-12]} {RNA1509_6430} {RNA1310_7026, RNA1509_6430} {RNA1509_6430, RNA815_6290}
13. MligTC455_52714 98 2.04 Mlig455_002830

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_002830 {REF} {Length: 541} {NoTransDecoderORF} {RNA1310_103263}
14. MligTC455_33345 73 1.53 Mlig455_022775

Neo: -

Age: Up-Down-Down

 ITPR2 0.95 - - - - 0.950 - Mlig455_022775 {REF} {Length: 10477} {Pfam: RIH domain [PF01365.23, score=93.1]; RyR and IP3R Homology associated [PF08454.13, score=68.6]; Inositol 1,4,5-trisphosphate/ryanodine receptor [PF08709.13, score=68.1]; MIR domain [PF02815.21, score=57.0]} {Human: ENSG00000123104, ITPR2, inositol 1,4,5-trisphosphate receptor type 2, [Score=204, Expect=1e-51]} {Mouse: ENSMUSG00000030287, Itpr2, inositol 1,4,5-triphosphate receptor 2, [Score=206, Expect=3e-52]; ENSMUSG00000042644, Itpr3, inositol 1,4,5-triphosphate receptor 3, [Score=199, Expect=3e-50]} {Dmel: FBgn0010051, Itp-r83A, Inositol 1,4,5,-tris-phosphate receptor, [Score=157, Expect=1e-37]} {Celegans: WBGene00002173, itr-1, Inositol 1,4,5-trisphosphate receptor itr-1, [Score=146, Expect=2e-34]} {Smed: dd_Smed_v6_3814_1_1, dd_Smed_v6_3814_1_1, [RH, Score=3019, Expect=0.0]} {RNA1509_31887} {RNA1310_193.1} {RNA815_9899}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA