M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_36251

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_36251 350 7.29 Mlig455_050190

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.514

 TTLL4 Mlig455_050190 {REF} {Length: 5898} {Pfam: Tubulin-tyrosine ligase family [PF03133.17, score=315.8]; YheC/D like ATP-grasp [PF14398.8, score=24.0]; Transcription factor IIA, alpha/beta subunit [PF03153.15, score=19.3]} {Human: ENSG00000135912, TTLL4, tubulin tyrosine ligase like 4, [RH, Score=564, Expect=0.0]} {Mouse: ENSMUSG00000033257, Ttll4, tubulin tyrosine ligase-like family, member 4, [RH, Score=578, Expect=0.0]} {Dmel: FBgn0026147, CG16833, [RH, Score=466, Expect=4e-148]} {Celegans: WBGene00014232, ttll-4, Tubulin polyglutamylase ttll-4, [RH, Score=374, Expect=8e-119]} {Smed: dd_Smed_v6_17034_0_1, dd_Smed_v6_17034_0_1, [RH, Score=554, Expect=0.0]} {RNA1509_13341, RNA1509_17615, RNA1509_33138, RNA1509_59326} {RNA1310_16061.1, RNA1509_13341, RNA1509_17615, RNA1509_33138, RNA1509_59326} {RNA1509_13341, RNA1509_17615, RNA1509_33138, RNA1509_59326, RNA815_15164}

Cumulative graph for MligTC455_36251

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.728 3.224 0.63738 1.00000
RegionR2 0.817 3.224 0.20635 0.56892
RegionR3 0.147 3.224 0.77987 1.00000
RegionR4 -0.468 3.224 0.47500 0.80272
RegionR5 -0.715 3.224 0.17850 0.45402
RegionR6 0.03 3.224 0.95304 1.00000
RegionR7 0.162 3.224 0.80952 1.00000
RegionR8 0.756 3.224 0.31026 0.94307

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.594 3.224 0.39120 1.00000
RegenerationR2 0.078 3.224 0.88245 1.00000
RegenerationR3 0.09 3.224 0.88396 1.00000
RegenerationR4 -0.15 3.224 0.81685 0.99224
RegenerationR5 0.32 3.224 0.61091 0.91471
RegenerationR6 -0.481 3.224 0.46195 0.77939
RegenerationBL -0.405 3.224 0.58663 0.93713
RegenerationTP -1.06 3.224 0.19229 0.63032


Genes with expression patterns similar to MligTC455_36251

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_36251 350 7.29 Mlig455_050190

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.514

 TTLL4 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_050190 {REF} {Length: 5898} {Pfam: Tubulin-tyrosine ligase family [PF03133.17, score=315.8]; YheC/D like ATP-grasp [PF14398.8, score=24.0]; Transcription factor IIA, alpha/beta subunit [PF03153.15, score=19.3]} {Human: ENSG00000135912, TTLL4, tubulin tyrosine ligase like 4, [RH, Score=564, Expect=0.0]} {Mouse: ENSMUSG00000033257, Ttll4, tubulin tyrosine ligase-like family, member 4, [RH, Score=578, Expect=0.0]} {Dmel: FBgn0026147, CG16833, [RH, Score=466, Expect=4e-148]} {Celegans: WBGene00014232, ttll-4, Tubulin polyglutamylase ttll-4, [RH, Score=374, Expect=8e-119]} {Smed: dd_Smed_v6_17034_0_1, dd_Smed_v6_17034_0_1, [RH, Score=554, Expect=0.0]} {RNA1509_13341, RNA1509_17615, RNA1509_33138, RNA1509_59326} {RNA1310_16061.1, RNA1509_13341, RNA1509_17615, RNA1509_33138, RNA1509_59326} {RNA1509_13341, RNA1509_17615, RNA1509_33138, RNA1509_59326, RNA815_15164}
2. MligTC455_39804 351 7.32 Mlig455_026117, Mlig455_026177

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.434

 2.449 - - - 0.715 0.782 0.952

Mlig455_026117 {REF} {Length: 1701} {Pfam: Immunoglobulin domain [PF13927.8, score=48.1]; Immunoglobulin I-set domain [PF07679.18, score=47.3]; Immunoglobulin domain [PF00047.27, score=33.0]; Immunoglobulin V-set domain [PF07686.19, score=30.6]} {Dmel: FBgn0037993, dpr15, defective proboscis extension response 15, [RH, Score=52.8, Expect=3e-07]} {Smed: dd_Smed_v6_22736_0_1, dd_Smed_v6_22736_0_1, [RH, Score=73.9, Expect=1e-14]} {RNA1310_21460} {RNA815_8845.1}

Mlig455_026177 {REF} {Length: 1111} {Pfam: Immunoglobulin domain [PF13927.8, score=41.5]; Immunoglobulin I-set domain [PF07679.18, score=39.2]; Immunoglobulin domain [PF00047.27, score=26.5]; Immunoglobulin V-set domain [PF07686.19, score=23.8]} {Dmel: FBgn0267428, CG45781, [Score=50.1, Expect=2e-06]} {Smed: dd_Smed_v6_22736_0_1, dd_Smed_v6_22736_0_1, [Score=67.8, Expect=1e-12]} {RNA1310_21460} {RNA815_8845.1}
3. MligTC455_15551 466 9.71 Mlig455_055903, Mlig455_055949

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.298

 STRIP2 1.726 - - 0.764 - - 0.962

Mlig455_055903 {REF} {Length: 3475} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF3402) [PF11882.10, score=281.0]; N1221-like protein [PF07923.15, score=153.3]} {Human: ENSG00000128578, STRIP2, striatin interacting protein 2, [Score=612, Expect=0.0]; ENSG00000143093, STRIP1, striatin interacting protein 1, [Score=608, Expect=0.0]} {Mouse: ENSMUSG00000039629, Strip2, striatin interacting protein 2, [Score=613, Expect=0.0]; ENSMUSG00000014601, Strip1, striatin interacting protein 1, [Score=603, Expect=0.0]} {Dmel: FBgn0035437, Strip, Striatin interacting protein, [RH, Score=573, Expect=0.0]} {Celegans: WBGene00017349, farl-11, FAR (Factor ARrest) Like, [Score=385, Expect=9e-120]} {Smed: dd_Smed_v6_2332_0_1, dd_Smed_v6_2332_0_1, [Score=492, Expect=5e-161]} {RNA1509_18666} {RNA1310_6909, RNA1509_18666} {RNA1509_18666, RNA815_8627}

Mlig455_055949 {REF} {Length: 3481} {Pfam: Domain of unknown function (DUF3402) [PF11882.10, score=284.3]; N1221-like protein [PF07923.15, score=148.2]} {Human: ENSG00000128578, STRIP2, striatin interacting protein 2, [Score=615, Expect=0.0]; ENSG00000143093, STRIP1, striatin interacting protein 1, [Score=607, Expect=0.0]} {Mouse: ENSMUSG00000039629, Strip2, striatin interacting protein 2, [Score=617, Expect=0.0]; ENSMUSG00000014601, Strip1, striatin interacting protein 1, [Score=602, Expect=0.0]} {Dmel: FBgn0035437, Strip, Striatin interacting protein, [Score=462, Expect=5e-150]} {Celegans: WBGene00017349, farl-11, FAR (Factor ARrest) Like, [Score=381, Expect=2e-118]} {Smed: dd_Smed_v6_2332_0_1, dd_Smed_v6_2332_0_1, [Score=491, Expect=1e-160]} {RNA1509_18666} {RNA1310_6909} {RNA815_8627}
4. MligTC455_33492 399 8.31 Mlig455_027669, Mlig455_047733, Mlig455_047821

Neo: -

Age: -

 NWD2 1.685 0.723 - - - - 0.962

Mlig455_027669 {REF} {Length: 7687} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF4062) [PF13271.8, score=49.8]; Dpy-30 motif [PF05186.15, score=45.9]; NACHT domain [PF05729.14, score=44.7]; AAA domain [PF13401.8, score=31.9]; AAA ATPase domain [PF13191.8, score=30.5]; ATPase domain predominantly from Archaea [PF01637.20, score=19.0]} {Human: ENSG00000174145, NWD2, NACHT and WD repeat domain containing 2, [Score=368, Expect=2e-102]} {Mouse: ENSMUSG00000090061, Nwd2, NACHT and WD repeat domain containing 2, [Score=363, Expect=2e-101]} {Dmel: FBgn0038397, CG10185, [Score=529, Expect=4e-156]} {Celegans: WBGene00020254, T05C3.2, [Score=511, Expect=1e-149]} {Smed: dd_Smed_v6_11085_0_1, dd_Smed_v6_11085_0_1, [Score=289, Expect=2e-78]} {RNA1509_8321} {RNA1310_329, RNA1509_8321} {RNA1509_8321, RNA815_359}

Mlig455_047733 {REF} {Length: 7687} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF4062) [PF13271.8, score=50.6]; Dpy-30 motif [PF05186.15, score=46.0]; NACHT domain [PF05729.14, score=43.8]; AAA domain [PF13401.8, score=31.8]; AAA ATPase domain [PF13191.8, score=31.4]} {Human: ENSG00000174145, NWD2, NACHT and WD repeat domain containing 2, [Score=371, Expect=2e-103]} {Mouse: ENSMUSG00000090061, Nwd2, NACHT and WD repeat domain containing 2, [Score=366, Expect=3e-102]} {Dmel: FBgn0038397, CG10185, [Score=532, Expect=3e-157]} {Celegans: WBGene00020254, T05C3.2, [Score=513, Expect=3e-150]} {Smed: dd_Smed_v6_11085_0_2, dd_Smed_v6_11085_0_2, [Score=291, Expect=4e-79]} {RNA1509_8321} {RNA1310_329} {RNA815_359}

Mlig455_047821 {REF} {Length: 1130} {Pfam: Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=18.3]}
5. MligTC455_44059 151 3.14 Mlig455_039109

Neo: -

Age: -

 NWD1 1.668 - 0.716 - - - 0.952 Mlig455_039109 {REF} {Length: 6668} {TRANSSPLICED} {Pfam: NACHT domain [PF05729.14, score=41.2]; AAA ATPase domain [PF13191.8, score=32.6]; WD domain, G-beta repeat [PF00400.34, score=27.1]; AAA domain [PF13401.8, score=22.7]; ATPase family associated with various cellular activities (AAA) [PF00004.31, score=22.2]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=19.3]} {Human: ENSG00000188039, NWD1, NACHT and WD repeat domain containing 1, [Score=238, Expect=1e-62]} {Mouse: ENSMUSG00000048148, Nwd1, NACHT and WD repeat domain containing 1, [Score=218, Expect=1e-56]} {Dmel: FBgn0038397, CG10185, [Score=298, Expect=1e-81]} {Celegans: WBGene00020254, T05C3.2, [Score=274, Expect=3e-74]} {Smed: dd_Smed_v6_11085_0_1, dd_Smed_v6_11085_0_1, [Score=193, Expect=3e-49]} {RNA1509_47458, RNA1509_6052} {RNA1310_736.1, RNA1509_47458} {RNA1509_47458, RNA815_218}
6. MligTC455_14049 376 7.83 Mlig455_049671

Neo: -

Age: -

 0.968 - - - - - 0.968 Mlig455_049671 {REF} {Length: 2740} {Pfam: Ubiquitin family [PF00240.25, score=51.7]; Ubiquitin-2 like Rad60 SUMO-like [PF11976.10, score=26.9]} {RNA1509_11983} {RNA1310_7335} {RNA815_858}
7. MligTC455_17150 374 7.79 Mlig455_033799, Mlig455_050240

Neo: -

Age: -

 0.965 - - - - - 0.965

Mlig455_033799 {REF} {Length: 394} {RNA1509_43209} {RNA1310_49037, RNA1509_43209} {RNA1509_43209, RNA815_24538}

Mlig455_050240 {REF} {Length: 215} {NoTransDecoderORF} {RNA1509_43209} {RNA1310_105303} {RNA815_36442}
8. MligTC455_45657 249 5.19 Mlig455_071169

Neo: -

Age: -

 FBXO25 0.962 - - - 0.962 - - Mlig455_071169 {REF} {Length: 3566} {TRANSSPLICED} {Human: ENSG00000147364, FBXO25, F-box protein 25, [Score=68.6, Expect=7e-13]} {Mouse: ENSMUSG00000038365, Fbxo25, F-box protein 25, [Score=72.4, Expect=4e-14]} {Dmel: FBgn0036196, CG11658, [Score=87.0, Expect=2e-19]} {Celegans: WBGene00008439, mfb-1, MAFBx (F-box) protein homolog, [Score=73.2, Expect=1e-14]} {Smed: dd_Smed_v6_11888_0_1, dd_Smed_v6_11888_0_1, [Score=105, Expect=2e-26]} {RNA1509_30284} {RNA1310_19890} {RNA815_23446.1}
9. MligTC455_45672 743 15.49 Mlig455_034867

Neo: -

Age: -

Region-enriched R4: 1.237/0.02291

 TMEM80 0.962 - - - - - 0.962 Mlig455_034867 {REF} {Length: 1153} {TRANSSPLICED} {Pfam: Predicted membrane protein [PF09799.11, score=79.4]} {Human: ENSG00000177042, TMEM80, transmembrane protein 80, [RH, Score=53.9, Expect=1e-08]} {Celegans: WBGene00194710, mks-2, MecKel-Gruber Syndrome (MKS) homolog, [RH, Score=49.7, Expect=6e-08]} {Smed: dd_Smed_v6_14636_0_1, dd_Smed_v6_14636_0_1, [Score=73.6, Expect=5e-17]} {RNA1509_35137, RNA1509_36429, RNA1509_39419} {RNA1310_30722.1, RNA1509_36429, RNA1509_39419} {RNA1509_36429, RNA1509_39419, RNA815_13266}
10. MligTC455_38111 393 8.19 Mlig455_026658

Neo: -

Age: logFC(26M/2M)=0.428

 AGXT2 0.96 - - - - - 0.960 Mlig455_026658 {REF} {Length: 2474} {Pfam: Aminotransferase class-III [PF00202.23, score=285.6]} {Human: ENSG00000113492, AGXT2, alanine--glyoxylate aminotransferase 2, [RH, Score=478, Expect=2e-165]} {Mouse: ENSMUSG00000089678, Agxt2, alanine-glyoxylate aminotransferase 2, [RH, Score=472, Expect=2e-163]} {Dmel: FBgn0037186, CG11241, [RH, Score=550, Expect=0.0]} {Celegans: WBGene00020382, T09B4.8, [RH, Score=508, Expect=5e-179]} {Smed: dd_Smed_v6_3154_0_1, dd_Smed_v6_3154_0_1, [RH, Score=570, Expect=0.0]} {RNA1509_30173, RNA1509_52790} {RNA1310_13205, RNA1509_30173, RNA1509_52790} {RNA1509_30173, RNA1509_52790, RNA815_19743}
11. MligTC455_42757 88 1.83 Mlig455_009132

Neo: -

Age: -

 LRFN1 0.957 - - - - - 0.957 Mlig455_009132 {REF} {Length: 4463} {Pfam: Leucine rich repeat [PF13855.8, score=55.0]; Immunoglobulin domain [PF13927.8, score=43.4]; Immunoglobulin V-set domain [PF07686.19, score=39.9]; Immunoglobulin domain [PF00047.27, score=39.5]; Immunoglobulin I-set domain [PF07679.18, score=35.5]; BspA type Leucine rich repeat region (6 copies) [PF13306.8, score=30.0]; Immunoglobulin domain [PF13895.8, score=28.2]; Leucine Rich repeats (2 copies) [PF12799.9, score=20.0]} {Human: ENSG00000128011, LRFN1, leucine rich repeat and fibronectin type III domain containing 1, [RH, Score=111, Expect=1e-24]} {Mouse: ENSMUSG00000030600, Lrfn1, leucine rich repeat and fibronectin type III domain containing 1, [RH, Score=112, Expect=4e-25]} {Dmel: FBgn0032484, kek4, kekkon4, [Score=71.2, Expect=2e-12]} {Celegans: WBGene00010621, egg-6, Leucine-rich repeat-containing protein egg-6, [Score=71.2, Expect=2e-12]} {Smed: dd_Smed_v6_18031_0_1, dd_Smed_v6_18031_0_1, [Score=124, Expect=3e-29]} {RNA1310_5378.1} {RNA815_13491}
12. MligTC455_04627 686 14.29 Mlig455_015426, Mlig455_032152

Neo: -

Age: -

 CDKL2 0.956 - - - 0.956 - -

Mlig455_015426 {REF} {Length: 3264} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=247.9]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=123.8]; RIO1 family [PF01163.24, score=23.5]} {Human: ENSG00000138769, CDKL2, cyclin dependent kinase like 2, [Score=435, Expect=1e-145]} {Mouse: ENSMUSG00000029403, Cdkl2, cyclin-dependent kinase-like 2 (CDC2-related kinase), [Score=411, Expect=1e-136]} {Dmel: FBgn0031730, CG7236, [Score=335, Expect=4e-109]} {Celegans: WBGene00012779, cdkl-1, Cyclin-Dependent Kinase-Like, [Score=324, Expect=5e-106]} {Smed: dd_Smed_v6_17162_0_1, dd_Smed_v6_17162_0_1, [RH, Score=401, Expect=7e-136]} {RNA1509_10647} {RNA1310_9710} {RNA815_15568}

Mlig455_032152 {REF} {Length: 2763} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=248.6]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=124.1]; RIO1 family [PF01163.24, score=23.5]} {Human: ENSG00000138769, CDKL2, cyclin dependent kinase like 2, [Score=430, Expect=8e-144]} {Mouse: ENSMUSG00000029403, Cdkl2, cyclin-dependent kinase-like 2 (CDC2-related kinase), [Score=409, Expect=5e-136]} {Dmel: FBgn0031730, CG7236, [Score=333, Expect=2e-108]} {Celegans: WBGene00012779, cdkl-1, Cyclin-Dependent Kinase-Like, [Score=322, Expect=2e-105]} {Smed: dd_Smed_v6_17162_0_1, dd_Smed_v6_17162_0_1, [RH, Score=400, Expect=1e-135]} {RNA1509_10647} {RNA1310_9710, RNA1509_10647} {RNA1509_10647, RNA815_8913}
13. MligTC455_44289 217 4.52 Mlig455_057699

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=0.361

 SPATA17 0.955 - - - - - 0.955 Mlig455_057699 {REF} {Length: 1429} {Pfam: IQ calmodulin-binding motif [PF00612.29, score=28.8]} {Human: ENSG00000162814, SPATA17, spermatogenesis associated 17, [Score=157, Expect=9e-45]} {Mouse: ENSMUSG00000026611, Spata17, spermatogenesis associated 17, [Score=149, Expect=9e-42]} {Dmel: FBgn0051735, CG31735, [RH, Score=56.6, Expect=6e-09]} {Smed: dd_Smed_v6_6435_0_1, dd_Smed_v6_6435_0_1, [Score=220, Expect=8e-70]} {RNA1310_21321} {RNA815_8534}
14. MligTC455_33842 492 10.26 Mlig455_004899

Neo: -

Age: -

Region-enriched R2: 2.178/0.01972

 CDKL1 0.954 - - - - - 0.954 Mlig455_004899 {REF} {Length: 2500} {Pfam: Protein kinase domain [PF00069.27, score=247.0]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=116.6]; Haspin like kinase domain [PF12330.10, score=18.7]; ABC1 atypical kinase-like domain [PF03109.18, score=18.6]} {Human: ENSG00000100490, CDKL1, cyclin dependent kinase like 1, [RH, Score=429, Expect=3e-150]; ENSG00000205111, CDKL4, cyclin dependent kinase like 4, [RH, Score=422, Expect=2e-148]} {Mouse: ENSMUSG00000020990, Cdkl1, cyclin-dependent kinase-like 1 (CDC2-related kinase), [RH, Score=432, Expect=7e-152]; ENSMUSG00000033966, Cdkl4, cyclin-dependent kinase-like 4, [RH, Score=423, Expect=3e-148]} {Dmel: FBgn0031730, CG7236, [RH, Score=381, Expect=6e-131]} {Celegans: WBGene00012779, cdkl-1, Cyclin-Dependent Kinase-Like, [RH, Score=396, Expect=4e-136]} {Smed: dd_Smed_v6_9353_0_1, dd_Smed_v6_9353_0_1, [RH, Score=481, Expect=5e-171]} {RNA1509_19679} {RNA1310_6686.1} {RNA815_5397}
15. MligTC455_48558 141 2.94 Mlig455_046385

Neo: -

Age: -

 0.95 - - - - - 0.950 Mlig455_046385 {REF} {Length: 1458} {RNA1310_43065} {RNA815_11099}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA