TomoSeq data search

Data search

Results for MligTC455_36339

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_36339

869

18.10

Mlig455_009256, Mlig455_009267, Mlig455_037042

Neo: -

Age: -

Region-enriched R4: 2.685/0.00066

Mlig455_009256 {REF} {Length: 3445} {TRANSSPLICED} {Pfam: LIM domain [PF00412.24, score=36.1]} {Mouse: ENSMUSG00000036718, Micall2, MICAL-like 2, [RH, Score=55.5, Expect=2e-07]} {Celegans: WBGene00003375, mlp-1, MLP/CRP family (Muscle LIM Protein/Cysteine-rich Protein), [Score=47.4, Expect=1e-06]} {Smed: dd_Smed_v6_7989_0_2, dd_Smed_v6_7989_0_2, [Score=87.4, Expect=6e-18]} {RNA1509_24680} {RNA1310_10968} {RNA815_7344}

Mlig455_009267 {REF} {Length: 3811} {TRANSSPLICED} {Pfam: LIM domain [PF00412.24, score=36.1]} {Mouse: ENSMUSG00000036718, Micall2, MICAL-like 2, [RH, Score=55.5, Expect=2e-07]} {Celegans: WBGene00003375, mlp-1, MLP/CRP family (Muscle LIM Protein/Cysteine-rich Protein), [Score=47.8, Expect=1e-06]} {Smed: dd_Smed_v6_4138_0_1, dd_Smed_v6_4138_0_1, [Score=84.0, Expect=2e-17]} {RNA1509_28189} {RNA1310_10968} {RNA815_7344}

Mlig455_037042 {REF} {Length: 3459} {TRANSSPLICED} {Pfam: LIM domain [PF00412.24, score=36.3]; Protein of unknown function (DUF719) [PF05334.15, score=19.4]} {Mouse: ENSMUSG00000036718, Micall2, MICAL-like 2, [Score=52.0, Expect=2e-06]} {Celegans: WBGene00003375, mlp-1, MLP/CRP family (Muscle LIM Protein/Cysteine-rich Protein), [Score=47.0, Expect=1e-06]} {Smed: dd_Smed_v6_4138_0_1, dd_Smed_v6_4138_0_1, [Score=87.4, Expect=7e-19]} {RNA1509_24680} {RNA1310_10968} {RNA815_9381.1}

Cumulative graph for MligTC455_36339

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-8.359	4.512	0.00243	0.15760
RegionR2	0.823	4.512	0.32871	0.72075
RegionR3	0.918	4.512	0.22191	0.76400
RegionR4	2.685	4.512	0.00004	0.00066
RegionR5	1.492	4.512	0.01667	0.08474
RegionR6	1.174	4.512	0.09150	0.55599
RegionR7	0.393	4.512	0.64880	1.00000
RegionR8	0.873	4.512	0.33927	0.97334

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	0.006	4.512	1.00000	1.00000
RegenerationR2	-0.878	4.512	0.03612	0.31430
RegenerationR3	-1.166	4.512	0.01475	0.22201
RegenerationR4	-1.518	4.512	0.00242	0.06334
RegenerationR5	-0.792	4.512	0.07786	0.43545
RegenerationR6	-0.962	4.512	0.04055	0.25199
RegenerationBL	-1.966	4.512	0.00077	0.01925
RegenerationTP	0.167	4.512	0.74630	1.00000

Genes with expression patterns similar to MligTC455_36339

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_36339	869	18.1	Mlig455_009256, Mlig455_009267, Mlig455_037042	Neo: - Age: - Region-enriched R4: 2.685/0.00066		6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_009256 {REF} {Length: 3445} {TRANSSPLICED} {Pfam: LIM domain [PF00412.24, score=36.1]} {Mouse: ENSMUSG00000036718, Micall2, MICAL-like 2, [RH, Score=55.5, Expect=2e-07]} {Celegans: WBGene00003375, mlp-1, MLP/CRP family (Muscle LIM Protein/Cysteine-rich Protein), [Score=47.4, Expect=1e-06]} {Smed: dd_Smed_v6_7989_0_2, dd_Smed_v6_7989_0_2, [Score=87.4, Expect=6e-18]} {RNA1509_24680} {RNA1310_10968} {RNA815_7344} Mlig455_009267 {REF} {Length: 3811} {TRANSSPLICED} {Pfam: LIM domain [PF00412.24, score=36.1]} {Mouse: ENSMUSG00000036718, Micall2, MICAL-like 2, [RH, Score=55.5, Expect=2e-07]} {Celegans: WBGene00003375, mlp-1, MLP/CRP family (Muscle LIM Protein/Cysteine-rich Protein), [Score=47.8, Expect=1e-06]} {Smed: dd_Smed_v6_4138_0_1, dd_Smed_v6_4138_0_1, [Score=84.0, Expect=2e-17]} {RNA1509_28189} {RNA1310_10968} {RNA815_7344} Mlig455_037042 {REF} {Length: 3459} {TRANSSPLICED} {Pfam: LIM domain [PF00412.24, score=36.3]; Protein of unknown function (DUF719) [PF05334.15, score=19.4]} {Mouse: ENSMUSG00000036718, Micall2, MICAL-like 2, [Score=52.0, Expect=2e-06]} {Celegans: WBGene00003375, mlp-1, MLP/CRP family (Muscle LIM Protein/Cysteine-rich Protein), [Score=47.0, Expect=1e-06]} {Smed: dd_Smed_v6_4138_0_1, dd_Smed_v6_4138_0_1, [Score=87.4, Expect=7e-19]} {RNA1509_24680} {RNA1310_10968} {RNA815_9381.1}
2.	MligTC455_29936	241	5.01	Mlig455_027834, Mlig455_032110, Mlig455_042040, Mlig455_053160, Mlig455_060013, Mlig455_068652	Neo: - Age: - Region-enriched R4: 2.807/0.01859		1.829	-	-	0.875	-	-	0.954	Mlig455_027834 {REF} {Length: 1462} {NoTransDecoderORF} {RNA1509_2515} {RNA1310_23566} {RNA815_3258.1} Mlig455_032110 {REF} {Length: 440} {RNA1509_22369} {RNA1310_28603.1} {RNA815_3258.1} Mlig455_042040 {REF} {Length: 1211} {NoTransDecoderORF} {RNA1509_2515} {RNA1310_23566} {RNA815_3258.1} Mlig455_053160 {REF} {Length: 1298} {NoTransDecoderORF} {RNA1509_2515} {RNA1310_23566} {RNA815_3258.1} Mlig455_060013 {REF} {Length: 1463} {NoTransDecoderORF} {RNA1509_2515} {RNA1310_23566} {RNA815_3258.1} Mlig455_068652 {REF} {Length: 1496} {NoTransDecoderORF} {RNA1509_2515} {RNA1310_23566} {RNA815_3258.1}
3.	MligTC455_18267	916	19.07	Mlig455_042717	Neo: - Age: -		0.969	-	-	-	0.969	-	-	Mlig455_042717 {REF} {Length: 814} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_8372} {RNA1310_6900} {RNA815_21704}
4.	MligTC455_39346	433	9.01	Mlig455_041056	Neo: - Age: -		0.966	-	-	-	-	0.966	-	Mlig455_041056 {REF} {Length: 3432} {Pfam: Phage-encoded virulence factor [PF15284.8, score=24.7]; Protein of unknown function (DUF1725) [PF08333.13, score=19.1]; Mitochondrial import 2 [PF19117.2, score=18.4]} {RNA1509_53421} {RNA1310_31349} {RNA815_25921}
5.	MligTC455_45322	836	17.42	Mlig455_041660	Neo: - Age: Down-Up-Up, logFC(26M/2M)=0.310 Region-enriched R4: 1.744/0.00007	NUDT18	0.962	-	-	-	0.962	-	-	Mlig455_041660 {REF} {Length: 2193} {TRANSSPLICED} {Pfam: NUDIX domain [PF00293.30, score=53.7]} {Human: ENSG00000275074, NUDT18, nudix hydrolase 18, [RH, Score=95.9, Expect=1e-21]} {Mouse: ENSMUSG00000045211, Nudt18, nudix (nucleoside diphosphate linked moiety X)-type motif 18, [RH, Score=92.0, Expect=2e-20]} {Dmel: FBgn0037911, CG10898, [RH, Score=91.7, Expect=2e-20]} {Celegans: WBGene00003578, ndx-1, Putative nudix hydrolase 1, [RH, Score=106, Expect=1e-25]} {Smed: dd_Smed_v6_2689_0_1, dd_Smed_v6_2689_0_1, [RH, Score=119, Expect=5e-31]} {RNA1509_20760, RNA1509_30897} {RNA1310_16185.3, RNA1509_20760, RNA1509_30897} {RNA1509_20760, RNA1509_30897, RNA815_7867}
6.	MligTC455_23522	537	11.19	Mlig455_039829	Neo: - Age: -	ESRRA	0.957	-	-	-	0.957	-	-	Mlig455_039829 {REF} {Length: 5547} {TRANSSPLICED} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=96.9]; Ligand-binding domain of nuclear hormone receptor [PF00104.32, score=19.1]} {Human: ENSG00000173153, ESRRA, estrogen related receptor alpha, [RH, Score=161, Expect=2e-43]; ENSG00000119715, ESRRB, estrogen related receptor beta, [RH, Score=158, Expect=5e-42]} {Mouse: ENSMUSG00000024955, Esrra, estrogen related receptor, alpha, [RH, Score=162, Expect=7e-44]} {Dmel: FBgn0035849, ERR, estrogen-related receptor, [Score=154, Expect=1e-40]} {Celegans: WBGene00003623, nhr-25, Nuclear hormone receptor family member nhr-25, [Score=123, Expect=9e-30]} {Smed: dd_Smed_v6_12699_0_1, dd_Smed_v6_12699_0_1, [Score=110, Expect=1e-25]} {RNA1509_14376, RNA1509_50302, RNA1509_53182, RNA1509_57190} {RNA1310_15723.1, RNA1509_14376, RNA1509_50302, RNA1509_53182, RNA1509_57190} {RNA1509_14376, RNA1509_50302, RNA1509_53182, RNA1509_57190, RNA815_2007}
7.	MligTC455_47107	280	5.82	Mlig455_067161	Neo: - Age: Down-Up-Down, logFC(26M/2M)=1.017	LRCH3	0.953	-	-	-	-	-	0.953	Mlig455_067161 {REF} {Length: 2963} {Pfam: Calponin homology (CH) domain [PF00307.33, score=38.6]} {Human: ENSG00000186001, LRCH3, leucine rich repeats and calponin homology domain containing 3, [RH, Score=90.1, Expect=3e-22]} {Mouse: ENSMUSG00000022801, Lrch3, leucine-rich repeats and calponin homology (CH) domain containing 3, [RH, Score=88.2, Expect=2e-20]} {Dmel: FBgn0032633, Lrch, Leucine-rich-repeats and calponin homology domain protein, [Score=86.7, Expect=5e-20]} {Celegans: WBGene00000779, cpn-3, CalPoNin, [Score=47.0, Expect=4e-07]} {Smed: dd_Smed_v6_12270_0_1, dd_Smed_v6_12270_0_1, [Score=62.0, Expect=1e-11]} {RNA1509_10681} {RNA1310_4311} {RNA815_2362}

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