M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_36573

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_36573 485 10.10 Mlig455_018038, Mlig455_054937

Neo: Irradiation

Age: Up-Down-Down

Region-enriched R3: 3.020/0.00000
Region-enriched R4: 2.277/0.00874

Mlig455_018038 {REF} {Length: 3537} {RNA1509_41400} {RNA1310_4515.1} {RNA815_3928}

Mlig455_054937 {REF} {Length: 6292} {RNA1509_41400} {RNA1310_4515.1} {RNA815_3928}

Cumulative graph for MligTC455_36573

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.977 3.843 0.16725 0.79126
RegionR2 1.007 3.843 0.17785 0.52738
RegionR3 3.02 3.843 0.00000 0.00000
RegionR4 2.277 3.843 0.00080 0.00874
RegionR5 0.251 3.843 0.71618 1.00000
RegionR6 0.281 3.843 0.69656 1.00000
RegionR7 -1.924 3.843 0.14284 0.70557
RegionR8 -1.936 3.843 0.21260 0.81653

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -4.115 3.843 0.55256 1.00000
RegenerationR2 0.903 3.843 0.08589 0.47152
RegenerationR3 -0.171 3.843 0.74211 0.96149
RegenerationR4 -0.107 3.843 0.85741 1.00000
RegenerationR5 1.831 3.843 0.00193 0.07568
RegenerationR6 -0.348 3.843 0.62770 0.88538
RegenerationBL 0.047 3.843 0.94618 1.00000
RegenerationTP 2.444 3.843 0.01845 0.23253


Genes with expression patterns similar to MligTC455_36573

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_36573 485 10.1 Mlig455_018038, Mlig455_054937

Neo: Irradiation

Age: Up-Down-Down

Region-enriched R3: 3.020/0.00000
Region-enriched R4: 2.277/0.00874

 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_018038 {REF} {Length: 3537} {RNA1509_41400} {RNA1310_4515.1} {RNA815_3928}

Mlig455_054937 {REF} {Length: 6292} {RNA1509_41400} {RNA1310_4515.1} {RNA815_3928}
2. MligTC455_25754 70 1.47 Mlig455_050393

Neo: -

Age: -

Region-enriched R4: 7.205/0.00712

 1.867 - 0.957 - - - 0.910 Mlig455_050393 {REF} {Length: 1387} {RNA1509_57365} {RNA1310_58913} {RNA815_32443}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA