TomoSeq data search

Data search

Results for MligTC455_36577

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_36577

11

0.23

Mlig455_034682

Neo: -

Age: -

GVQW3

Mlig455_034682 {REF} {Length: 1233} {Human: ENSG00000179240, GVQW3, GVQW motif containing 3, [Score=64.3, Expect=7e-13]} {RNA1509_20081} {RNA1310_73109} {RNA815_14798.1}

Cumulative graph for MligTC455_36577

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-2.5	0.57	1.00000	1.00000
RegionR2	2.326	0.57	1.00000	1.00000
RegionR3	0.845	0.57	0.99996	1.00000
RegionR4	-2.218	0.57	0.99986	1.00000
RegionR5	-0.187	0.57	0.99990	1.00000
RegionR6	0.201	0.57	0.99992	1.00000
RegionR7	0.812	0.57	0.99998	1.00000
RegionR8	0.72	0.57	0.99996	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	1.334	0.57	0.99994	1.00000
RegenerationR2	0.932	0.57	0.99990	1.00000
RegenerationR3	1.106	0.57	1.00000	1.00000
RegenerationR4	0.046	0.57	0.99991	1.00000
RegenerationR5	2.06	0.57	0.99964	1.00000
RegenerationR6	-0.479	0.57	0.99995	1.00000
RegenerationBL	-1.231	0.57	0.99992	1.00000
RegenerationTP	3.208	0.57	0.99965	1.00000

Genes with expression patterns similar to MligTC455_36577

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_36577	11	0.23	Mlig455_034682	Neo: - Age: -	GVQW3	1	-	-	-	-	1.000	-	Mlig455_034682 {REF} {Length: 1233} {Human: ENSG00000179240, GVQW3, GVQW motif containing 3, [Score=64.3, Expect=7e-13]} {RNA1509_20081} {RNA1310_73109} {RNA815_14798.1}
2.	MligTC455_20244	224	4.67	Mlig455_006227, Mlig455_006289	Neo: - Age: Down-Down-Up	PRR9	0.975	-	-	-	-	0.975	-	Mlig455_006227 {REF} {Length: 528} {NoTransDecoderORF} {RNA1509_36220} {RNA1310_70757.1} {RNA815_57106} Mlig455_006289 {REF} {Length: 2388} {Human: ENSG00000203783, PRR9, proline rich 9, [Score=44.7, Expect=1e-05]} {RNA1509_13, RNA1509_34, RNA1509_36220} {RNA1310_70757.1, RNA1509_13, RNA1509_34} {RNA1509_13, RNA1509_34, RNA815_57106}
3.	MligTC455_37222	36	0.76	Mlig455_053487	Neo: - Age: Up-Down-Down	AFDN	0.974	-	-	-	-	0.974	-	Mlig455_053487 {REF} {Length: 6491} {TRANSSPLICED} {Pfam: Ras association (RalGDS/AF-6) domain [PF00788.25, score=108.6]; DIL domain [PF01843.21, score=81.7]; PDZ domain [PF00595.26, score=45.4]; PDZ domain [PF17820.3, score=31.5]; FHA domain [PF00498.28, score=25.3]} {Human: ENSG00000130396, AFDN, afadin, adherens junction formation factor, [RH, Score=370, Expect=4e-103]} {Mouse: ENSMUSG00000068036, Afdn, afadin, adherens junction formation factor, [RH, Score=373, Expect=2e-104]} {Dmel: FBgn0259212, cno, canoe, [RH, Score=394, Expect=5e-111]} {Celegans: WBGene00021009, afd-1, AFaDin (Actin filament binding protein) homolog, [RH, Score=239, Expect=1e-63]} {Smed: dd_Smed_v6_7215_0_1, dd_Smed_v6_7215_0_1, [RH, Score=507, Expect=9e-149]} {RNA1509_46128, RNA1509_8828} {RNA1310_583.1, RNA1509_46128, RNA1509_8828} {RNA1509_46128, RNA1509_8828, RNA815_5511}
4.	MligTC455_32863	188	3.91	Mlig455_028353	Neo: Int S/G2/M Age: Up-Up-Down		0.97	-	-	-	-	0.970	-	Mlig455_028353 {REF} {Length: 1978} {TRANSSPLICED} {RNA1509_40955} {RNA1310_60768} {RNA815_8954.1}
5.	MligTC455_56531	25	0.52	Mlig455_015240	Neo: - Age: -		0.969	-	-	-	-	0.969	-	Mlig455_015240 {REF} {Length: 177} {NoTransDecoderORF} {RNA1509_15017}
6.	MligTC455_10954	78	1.63	Mlig455_012438	Neo: - Age: - Region-enriched R3: 4.055/0.01957 Region-enriched R5: 3.141/0.04481		0.958	-	-	-	-	0.958	-	Mlig455_012438 {REF} {Length: 1348} {RNA1509_16019, RNA1509_5205} {RNA1310_77099, RNA1509_16019, RNA1509_5205} {RNA1509_16019, RNA1509_5205, RNA815_481.1}
7.	MligTC455_40308	21	0.44	Mlig455_047748	Neo: - Age: -		0.955	-	-	-	-	0.955	-	Mlig455_047748 {REF} {Length: 474} {NoTransDecoderORF}
8.	MligTC455_50134	108	2.26	Mlig455_058061	Neo: - Age: -		0.955	-	-	-	-	0.955	-	Mlig455_058061 {REF} {Length: 2026} {RNA1509_11387} {RNA1310_15929.1} {RNA815_15301.1}
9.	MligTC455_27101	98	2.04	Mlig455_030183	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.419	URGCP	0.952	-	-	-	-	0.952	-	Mlig455_030183 {REF} {Length: 5914} {Pfam: Mediator complex subunit 25 von Willebrand factor type A [PF11265.10, score=24.4]; Root hair defective 3 GTP-binding protein (RHD3) [PF05879.14, score=24.3]; Dynamin family [PF00350.25, score=21.9]; Guanylate-binding protein, N-terminal domain [PF02263.21, score=20.4]; 50S ribosome-binding GTPase [PF01926.25, score=20.1]} {Human: ENSG00000106608, URGCP, upregulator of cell proliferation, [Score=124, Expect=6e-28]} {Mouse: ENSMUSG00000078606, Gm4070, predicted gene 4070, [Score=402, Expect=4e-115]; ENSMUSG00000045868, Gvin1, GTPase, very large interferon inducible 1, [Score=400, Expect=2e-114]} {RNA1509_16396} {RNA1310_766.1} {RNA815_2094.1}

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