TomoSeq data search

Data search

Results for MligTC455_37147

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_37147

19

0.40

Mlig455_037963

Neo: -

Age: -

RTL1

Mlig455_037963 {REF} {Length: 4557} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=111.6]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=102.7]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=77.6]; Integrase zinc binding domain [PF17921.3, score=61.9]; Integrase core domain [PF00665.28, score=48.4]; gag-polyprotein putative aspartyl protease [PF13975.8, score=20.6]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=95.9, Expect=4e-19]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=74.7, Expect=8e-13]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=317, Expect=7e-91]} {RNA1509_41126} {RNA1310_3178} {RNA815_32604}

Cumulative graph for MligTC455_37147

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	1.096	0.798	1.00000	1.00000
RegionR2	-2.297	0.798	0.99764	1.00000
RegionR3	-2.381	0.798	0.99988	1.00000
RegionR4	2.708	0.798	0.22790	0.52047
RegionR5	1.518	0.798	0.35550	0.70619
RegionR6	-1.003	0.798	0.91688	1.00000
RegionR7	1.652	0.798	0.39452	1.00000
RegionR8	-1.292	0.798	0.99983	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-3.059	0.798	0.99979	1.00000
RegenerationR2	-0.039	0.798	0.87411	1.00000
RegenerationR3	1.112	0.798	0.62041	0.91690
RegenerationR4	-1.767	0.798	0.55179	0.89329
RegenerationR5	-2.017	0.798	0.45131	0.83126
RegenerationR6	-1.301	0.798	0.56427	0.84842
RegenerationBL	0.043	0.798	0.93098	1.00000
RegenerationTP	0.35	0.798	0.95155	1.00000

Genes with expression patterns similar to MligTC455_37147

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_37147	19	0.4	Mlig455_037963	Neo: - Age: -	RTL1	3	-	-	1.000	-	1.000	1.000	Mlig455_037963 {REF} {Length: 4557} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=111.6]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=102.7]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=77.6]; Integrase zinc binding domain [PF17921.3, score=61.9]; Integrase core domain [PF00665.28, score=48.4]; gag-polyprotein putative aspartyl protease [PF13975.8, score=20.6]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=95.9, Expect=4e-19]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=74.7, Expect=8e-13]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=317, Expect=7e-91]} {RNA1509_41126} {RNA1310_3178} {RNA815_32604}
2.	MligTC455_37148	19	0.39	Mlig455_041873	Neo: - Age: -		1.883	-	-	0.887	-	0.996	-	Mlig455_041873 {REF} {Length: 1755} {TRANSSPLICED} {Pfam: Integrase core domain [PF00665.28, score=29.5]; Integrase core domain [PF13683.8, score=19.8]} {Smed: dd_Smed_v6_28750_0_1, dd_Smed_v6_28750_0_1, [Score=67.0, Expect=2e-13]} {RNA1509_40904} {RNA1310_5667} {RNA815_1981.1}
3.	MligTC455_08957	8	0.18	Mlig455_051321	Neo: - Age: -		0.983	-	-	-	-	0.983	-	Mlig455_051321 {REF} {Length: 473} {NoTransDecoderORF} {RNA1310_104048}
4.	MligTC455_41848	275	5.74	Mlig455_003069	Neo: Int S/G2/M Age: -	KDM1A	0.967	-	-	0.967	-	-	-	Mlig455_003069 {REF} {Length: 4146} {TRANSSPLICED} {Pfam: Flavin containing amine oxidoreductase [PF01593.26, score=356.8]; SWIRM domain [PF04433.19, score=52.4]; NAD(P)-binding Rossmann-like domain [PF13450.8, score=40.2]; FAD dependent oxidoreductase [PF01266.26, score=26.8]; Alanine dehydrogenase/PNT, C-terminal domain [PF01262.23, score=24.7]; Pyridine nucleotide-disulphide oxidoreductase [PF00070.29, score=23.9]; Pyridine nucleotide-disulphide oxidoreductase [PF07992.16, score=23.1]; FAD binding domain [PF00890.26, score=21.7]; HI0933-like protein [PF03486.16, score=20.9]; FAD binding domain [PF01494.21, score=18.1]} {Human: ENSG00000004487, KDM1A, lysine demethylase 1A, [RH, Score=682, Expect=0.0]} {Mouse: ENSMUSG00000036940, Kdm1a, lysine (K)-specific demethylase 1A, [RH, Score=684, Expect=0.0]} {Dmel: FBgn0260397, Su(var)3-3, Suppressor of variegation 3-3, [RH, Score=582, Expect=0.0]} {Celegans: WBGene00005010, spr-5, Probable lysine-specific histone demethylase 1, [RH, Score=191, Expect=3e-51]} {Smed: dd_Smed_v6_7431_0_4, dd_Smed_v6_7431_0_4, [RH, Score=310, Expect=4e-93]} {RNA1509_16203} {RNA1310_5633} {RNA815_14558}
5.	MligTC455_32977	4	0.08	Mlig455_002078	Neo: - Age: Up-Down-Up, logFC(26M/2M)=0.856	MTA3	0.963	-	-	-	-	0.963	-	Mlig455_002078 {REF} {Length: 3745} {Pfam: BAH domain [PF01426.20, score=102.1]; ELM2 domain [PF01448.26, score=40.6]; MTA R1 domain [PF17226.4, score=37.5]; Myb-like DNA-binding domain [PF00249.33, score=22.5]; GATA zinc finger [PF00320.29, score=21.5]} {Human: ENSG00000057935, MTA3, metastasis associated 1 family member 3, [RH, Score=575, Expect=0.0]; ENSG00000149480, MTA2, metastasis associated 1 family member 2, [RH, Score=571, Expect=0.0]; ENSG00000182979, MTA1, metastasis associated 1, [RH, Score=570, Expect=0.0]} {Mouse: ENSMUSG00000021144, Mta1, metastasis associated 1, [RH, Score=572, Expect=0.0]; ENSMUSG00000071646, Mta2, metastasis-associated gene family, member 2, [RH, Score=572, Expect=0.0]; ENSMUSG00000055817, Mta3, metastasis associated 3, [RH, Score=566, Expect=0.0]} {Dmel: FBgn0027951, MTA1-like, Metastasis associated 1-like, [RH, Score=544, Expect=0.0]} {Celegans: WBGene00003025, lin-40, [RH, Score=209, Expect=1e-56]} {Smed: dd_Smed_v6_5860_0_1, dd_Smed_v6_5860_0_1, [RH, Score=464, Expect=8e-154]} {RNA1509_41730, RNA1509_7886} {RNA1310_5616.1, RNA1509_41730} {RNA1509_41730, RNA815_8693}

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