M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_37628

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_37628 68 1.42 Mlig455_058558

Neo: -

Age: -

 Mlig455_058558 {REF} {Length: 642} {NoTransDecoderORF} {RNA1509_59553} {RNA1310_141541} {RNA815_64986}

Cumulative graph for MligTC455_37628

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.559 1.486 0.99974 1.00000
RegionR2 1.058 1.486 0.55840 0.92132
RegionR3 0.694 1.486 0.64853 1.00000
RegionR4 0.446 1.486 0.60127 0.91427
RegionR5 -0.321 1.486 0.91935 1.00000
RegionR6 0.795 1.486 0.55325 1.00000
RegionR7 1.782 1.486 0.32226 0.95759
RegionR8 -1.896 1.486 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.147 1.486 1.00000 1.00000
RegenerationR2 1.347 1.486 0.16701 0.60499
RegenerationR3 0.98 1.486 0.48678 0.85333
RegenerationR4 0.311 1.486 0.77373 0.97806
RegenerationR5 2.005 1.486 0.10541 0.49211
RegenerationR6 0.961 1.486 0.47634 0.78899
RegenerationBL 1.108 1.486 0.56570 0.92030
RegenerationTP 2.828 1.486 0.22011 0.66348


Genes with expression patterns similar to MligTC455_37628

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_37628 68 1.42 Mlig455_058558

Neo: -

Age: -

 4 - - 1.000 1.000 1.000 1.000 Mlig455_058558 {REF} {Length: 642} {NoTransDecoderORF} {RNA1509_59553} {RNA1310_141541} {RNA815_64986}
2. MligTC455_03742 55 1.15 Mlig455_013169

Neo: -

Age: -

 SLC46A1 1.863 - - 0.951 - 0.912 - Mlig455_013169 {REF} {Length: 3597} {Pfam: Major Facilitator Superfamily [PF07690.18, score=69.1]} {Human: ENSG00000076351, SLC46A1, solute carrier family 46 member 1, [Score=125, Expect=1e-30]} {Mouse: ENSMUSG00000020829, Slc46a1, solute carrier family 46, member 1, [Score=135, Expect=2e-34]; ENSMUSG00000029650, Slc46a3, solute carrier family 46, member 3, [Score=129, Expect=8e-32]} {Dmel: FBgn0050345, CG30345, [RH, Score=77.4, Expect=9e-15]} {Celegans: WBGene00021159, Y4C6B.5, [Score=66.2, Expect=2e-11]} {Smed: dd_Smed_v6_5528_0_1, dd_Smed_v6_5528_0_1, [Score=134, Expect=5e-34]} {RNA1509_56132} {RNA1310_30959} {RNA815_5400}
3. MligTC455_38206 217 4.52 Mlig455_059978

Neo: -

Age: Down-Up-Down

 1.722 - - - 0.963 - 0.759 Mlig455_059978 {REF} {Length: 2220} {Pfam: Protein of unknown function with motif GDWWSH [PF15667.7, score=82.7]} {Smed: dd_Smed_v6_6622_0_1, dd_Smed_v6_6622_0_1, [RH, Score=115, Expect=3e-30]} {RNA1509_17987} {RNA1310_18030, RNA1509_17987} {RNA1509_17987, RNA815_6839.1}
4. MligTC455_38701 102 2.13 Mlig455_015653, Mlig455_023761

Neo: -

Age: -

 ANK1, FPGT-TNNI3K 1.716 - - - 0.749 - 0.967

Mlig455_015653 {REF} {Length: 5454} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=72.8]; Ankyrin repeats (many copies) [PF13857.8, score=71.0]; Ankyrin repeats (many copies) [PF13637.8, score=55.5]; Ankyrin repeat [PF00023.32, score=54.3]; Ankyrin repeat [PF13606.8, score=41.5]} {Human: ENSG00000029534, ANK1, ankyrin 1, [Score=72.0, Expect=2e-15]; ENSG00000154065, ANKRD29, ankyrin repeat domain 29, [Score=70.1, Expect=3e-15]; ENSG00000151458, ANKRD50, ankyrin repeat domain 50, [Score=68.6, Expect=3e-14]} {Mouse: ENSMUSG00000031543, Ank1, ankyrin 1, erythroid, [Score=74.7, Expect=1e-16]} {Dmel: FBgn0261554, CG42672, [Score=63.9, Expect=5e-13]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=67.8, Expect=2e-14]} {Smed: dd_Smed_v6_9936_0_1, dd_Smed_v6_9936_0_1, [Score=77.8, Expect=5e-18]} {RNA1509_28959} {RNA1310_10537} {RNA815_15195}

Mlig455_023761 {REF} {Length: 3109} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=70.7]; Ankyrin repeat [PF00023.32, score=65.6]; Ankyrin repeats (many copies) [PF13637.8, score=57.1]; Ankyrin repeat [PF13606.8, score=46.0]; Ankyrin repeats (many copies) [PF13857.8, score=45.3]; Mab-21 protein [PF03281.16, score=25.8]} {Human: ENSG00000259030, FPGT-TNNI3K, FPGT-TNNI3K readthrough, [Score=77.8, Expect=2e-14]; ENSG00000116783, TNNI3K, TNNI3 interacting kinase, [Score=77.4, Expect=3e-14]; ENSG00000029534, ANK1, ankyrin 1, [Score=75.9, Expect=1e-13]; ENSG00000151150, ANK3, ankyrin 3, [Score=75.1, Expect=2e-13]; ENSG00000085382, HACE1, HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1, [Score=74.7, Expect=2e-13]} {Mouse: ENSMUSG00000040086, Tnni3k, TNNI3 interacting kinase, [Score=82.4, Expect=5e-16]} {Dmel: FBgn0031473, CG3104, [Score=82.4, Expect=5e-17]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=74.7, Expect=8e-14]} {Smed: dd_Smed_v6_9936_0_1, dd_Smed_v6_9936_0_1, [Score=77.8, Expect=5e-15]} {RNA1509_26004} {RNA1310_3906.1} {RNA815_1664.1}
5. MligTC455_51894 30 0.62 Mlig455_038860

Neo: -

Age: -

 1.668 - - - 0.967 - 0.701 Mlig455_038860 {REF} {Length: 2284} {RNA1310_63177} {RNA815_30782}
6. MligTC455_29788 91 1.9 Mlig455_020105, Mlig455_070460

Neo: -

Age: -

Regeneration-upregulated BL: 5.837

Regeneration-enriched BL: 5.837

 0.983 - - - - 0.983 -

Mlig455_020105 {REF} {Length: 305} {NoTransDecoderORF} {RNA1509_9591} {RNA1310_52622} {RNA815_16629}

Mlig455_070460 {REF} {Length: 2457} {Pfam: DNA polymerase type B, organellar and viral [PF03175.15, score=54.6]} {Celegans: WBGene00007723, C25F9.2, [Score=142, Expect=3e-36]} {RNA1509_17816} {RNA1310_3417} {RNA815_694.1}
7. MligTC455_11212 66 1.38 Mlig455_069909

Neo: -

Age: -

Region-enriched R4: 4.111/0.02748

 0.975 - - - - - 0.975 Mlig455_069909 {REF} {Length: 1945} {NoTransDecoderORF} {RNA1509_9725} {RNA1310_56853} {RNA815_29618}
8. MligTC455_10064 68 1.41 Mlig455_029458, Mlig455_029482

Neo: -

Age: -

 0.966 - - - - 0.966 -

Mlig455_029458 {REF} {Length: 1576} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=28.7]} {RNA1310_20120.1} {RNA815_50604}

Mlig455_029482 {REF} {Length: 3696} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=29.0]} {RNA1310_20120.1} {RNA815_30795}
9. MligTC455_48569 31 0.65 Mlig455_066874

Neo: -

Age: -

 0.966 - - - - - 0.966 Mlig455_066874 {REF} {Length: 1074} {NoTransDecoderORF} {RNA1310_59259}
10. MligTC455_07872 176 3.66 Mlig455_055641

Neo: -

Age: -

 ARHGEF2 0.965 - - 0.965 - - - Mlig455_055641 {REF} {Length: 6227} {Pfam: RhoGEF domain [PF00621.22, score=49.4]; PH domain [PF17838.3, score=35.7]} {Human: ENSG00000116584, ARHGEF2, Rho/Rac guanine nucleotide exchange factor 2, [Score=130, Expect=9e-30]} {Mouse: ENSMUSG00000028059, Arhgef2, rho/rac guanine nucleotide exchange factor (GEF) 2, [Score=124, Expect=4e-28]; ENSMUSG00000066406, Akap13, A kinase (PRKA) anchor protein 13, [Score=123, Expect=1e-27]} {Dmel: FBgn0032796, CG10188, [Score=104, Expect=4e-22]} {Smed: dd_Smed_v6_3992_0_1, dd_Smed_v6_3992_0_1, [Score=69.7, Expect=1e-11]} {RNA1509_21243, RNA1509_38363} {RNA1310_3252.1, RNA1509_38363} {RNA1509_38363, RNA815_29713}
11. MligTC455_32675 168 3.49 Mlig455_029171

Neo: -

Age: -

 0.965 - - - - 0.965 - Mlig455_029171 {REF} {Length: 2479} {RNA1509_34477, RNA1509_6872} {RNA1310_19869.1, RNA1509_34477} {RNA1509_34477, RNA815_8634}
12. MligTC455_41100 341 7.09 Mlig455_000788

Neo: -

Age: Up-Down-Down

 JUN 0.964 - - - - 0.964 - Mlig455_000788 {REF} {Length: 1682} {Pfam: bZIP transcription factor [PF00170.23, score=35.1]; bZIP Maf transcription factor [PF03131.19, score=23.4]; Basic region leucine zipper [PF07716.17, score=23.0]} {Human: ENSG00000177606, JUN, Jun proto-oncogene, AP-1 transcription factor subunit, [Score=54.3, Expect=3e-08]; ENSG00000130522, JUND, JunD proto-oncogene, AP-1 transcription factor subunit, [Score=53.5, Expect=5e-08]} {Mouse: ENSMUSG00000052684, Jun, jun proto-oncogene, [Score=54.3, Expect=2e-08]; ENSMUSG00000110974, Jund, jun D proto-oncogene, [Score=53.5, Expect=3e-08]; ENSMUSG00000071076, Jund, jun D proto-oncogene, [Score=53.5, Expect=3e-08]} {Dmel: FBgn0001291, Jra, Jun-related antigen, [Score=56.2, Expect=3e-09]} {Celegans: WBGene00012005, jun-1, Transcription factor jun-1, [Score=47.4, Expect=2e-06]} {Smed: dd_Smed_v6_5875_0_1, dd_Smed_v6_5875_0_1, [Score=49.7, Expect=2e-07]} {RNA1509_19720, RNA1509_49705} {RNA1310_26812, RNA1509_49705} {RNA1509_49705, RNA815_12638}
13. MligTC455_03849 38 0.8 Mlig455_057351

Neo: -

Age: -

 0.963 - - - - - 0.963 Mlig455_057351 {REF} {Length: 413} {NoTransDecoderORF}
14. MligTC455_11141 14 0.3 Mlig455_047597

Neo: -

Age: -

 0.96 - - - - - 0.960 Mlig455_047597 {REF} {Length: 667} {NoTransDecoderORF} {RNA1310_102103} {RNA815_39659}
15. MligTC455_29122 44 0.92 Mlig455_024416

Neo: -

Age: -

Regeneration-enriched R4: 12.144
Regeneration-enriched R3: 11.972
Regeneration-enriched R5: 11.411
Regeneration-enriched R6: 11.095
Regeneration-enriched TP: 10.240
Regeneration-enriched R2: 8.714

 GRXCR1 0.956 - - - - - 0.956 Mlig455_024416 {REF} {Length: 2547} {TRANSSPLICED} {Pfam: Glutaredoxin [PF00462.26, score=27.6]} {Human: ENSG00000215203, GRXCR1, glutaredoxin and cysteine rich domain containing 1, [RH, Score=112, Expect=2e-28]} {Mouse: ENSMUSG00000068082, Grxcr1, glutaredoxin, cysteine rich 1, [RH, Score=114, Expect=2e-29]} {Dmel: FBgn0051559, CG31559, [RH, Score=110, Expect=8e-27]} {RNA1509_48519} {RNA1310_27075, RNA1509_48519} {RNA1509_48519, RNA815_22070.1}
16. MligTC455_41673 26 0.54 Mlig455_035834

Neo: -

Age: -

 0.956 - - - - - 0.956 Mlig455_035834 {REF} {Length: 1561} {NoTransDecoderORF} {RNA1310_64046} {RNA815_37581}
17. MligTC455_07167 37 0.78 Mlig455_009702

Neo: -

Age: -

 0.954 - - - - - 0.954 Mlig455_009702 {REF} {Length: 2152}
18. MligTC455_08134 23 0.47 Mlig455_027743

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_027743 {REF} {Length: 813} {NoTransDecoderORF} {RNA1310_53853} {RNA815_56009}
19. MligTC455_45683 346 7.21 Mlig455_067172

Neo: -

Age: Down-Up-Down

Region-enriched R7: 4.371/0.00009

 0.953 - - - - 0.953 - Mlig455_067172 {REF} {Length: 932} {Pfam: Late nodulin protein [PF07127.13, score=20.1]} {RNA1310_45419} {RNA815_22274}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA