M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_37706

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_37706 22 0.45 Mlig455_010221, Mlig455_022435, Mlig455_031788

Neo: -

Age: -

Mlig455_010221 {REF} {Length: 2910} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=193.0]} {Celegans: WBGene00016066, acd-2, [Score=61.6, Expect=1e-09]} {Smed: dd_Smed_v6_19727_0_1, dd_Smed_v6_19727_0_1, [Score=107, Expect=3e-24]}

Mlig455_022435 {REF} {Length: 893} {Pfam: Tyrosine-protein kinase ephrin type A/B receptor-like [PF07699.15, score=49.3]; Nine Cysteines Domain of family 3 GPCR [PF07562.16, score=23.8]} {RNA1509_31278} {RNA1310_69804} {RNA815_8281.1}

Mlig455_031788 {REF} {Length: 2177} {Pfam: Tyrosine-protein kinase ephrin type A/B receptor-like [PF07699.15, score=45.7]; Vitelline membrane outer layer protein I (VOMI) [PF03762.19, score=28.8]; Nine Cysteines Domain of family 3 GPCR [PF07562.16, score=27.4]; Orf78 (ac78) [PF06024.14, score=19.8]} {Celegans: WBGene00077697, F58E6.13, [Score=47.8, Expect=1e-05]} {Smed: dd_Smed_v6_3432_0_1, dd_Smed_v6_3432_0_1, [Score=75.1, Expect=4e-15]} {RNA1509_31278} {RNA1310_69839} {RNA815_59628}

Cumulative graph for MligTC455_37706

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_37706

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_37706 22 0.45 Mlig455_010221, Mlig455_022435, Mlig455_031788

Neo: -

Age: -

 1 - - 1.000 - - -

Mlig455_010221 {REF} {Length: 2910} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=193.0]} {Celegans: WBGene00016066, acd-2, [Score=61.6, Expect=1e-09]} {Smed: dd_Smed_v6_19727_0_1, dd_Smed_v6_19727_0_1, [Score=107, Expect=3e-24]}

Mlig455_022435 {REF} {Length: 893} {Pfam: Tyrosine-protein kinase ephrin type A/B receptor-like [PF07699.15, score=49.3]; Nine Cysteines Domain of family 3 GPCR [PF07562.16, score=23.8]} {RNA1509_31278} {RNA1310_69804} {RNA815_8281.1}

Mlig455_031788 {REF} {Length: 2177} {Pfam: Tyrosine-protein kinase ephrin type A/B receptor-like [PF07699.15, score=45.7]; Vitelline membrane outer layer protein I (VOMI) [PF03762.19, score=28.8]; Nine Cysteines Domain of family 3 GPCR [PF07562.16, score=27.4]; Orf78 (ac78) [PF06024.14, score=19.8]} {Celegans: WBGene00077697, F58E6.13, [Score=47.8, Expect=1e-05]} {Smed: dd_Smed_v6_3432_0_1, dd_Smed_v6_3432_0_1, [Score=75.1, Expect=4e-15]} {RNA1509_31278} {RNA1310_69839} {RNA815_59628}
2. MligTC455_05748 55 1.14 Mlig455_030842

Neo: -

Age: -

 0.989 - - 0.989 - - - Mlig455_030842 {REF} {Length: 531} {RNA1509_15634} {RNA1310_60348} {RNA815_35182}
3. MligTC455_22241 57 1.18 Mlig455_018211

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=1.973

 PSMF1 0.973 - - 0.973 - - - Mlig455_018211 {REF} {Length: 1588} {TRANSSPLICED} {Pfam: PI31 proteasome regulator N-terminal [PF11566.10, score=24.7]; Unstructured region C-term to UIM in Ataxin3 [PF16619.7, score=21.1]} {Human: ENSG00000125818, PSMF1, proteasome inhibitor subunit 1, [RH, Score=90.5, Expect=2e-20]} {Mouse: ENSMUSG00000032869, Psmf1, proteasome (prosome, macropain) inhibitor subunit 1, [RH, Score=82.8, Expect=8e-18]} {Dmel: FBgn0033669, PI31, Proteasome inhibitor 31 kDa, [Score=48.1, Expect=3e-06]} {RNA1509_6467} {RNA1310_17656} {RNA815_15126.2}
4. MligTC455_20963 45 0.95 Mlig455_003762

Neo: -

Age: -

 0.961 - - 0.961 - - - Mlig455_003762 {REF} {Length: 1917} {NoTransDecoderORF} {RNA1509_15862} {RNA1310_73168} {RNA815_32666}
5. MligTC455_30913 19 0.39 Mlig455_034474, Mlig455_042925, Mlig455_042926

Neo: -

Age: -

 0.959 - - 0.959 - - -

Mlig455_034474 {REF} {Length: 671} {NoTransDecoderORF} {RNA1509_55508} {RNA1310_19597} {RNA815_31859}

Mlig455_042925 {REF} {Length: 2534} {RNA1509_55508} {RNA1310_19597} {RNA815_31859}

Mlig455_042926 {REF} {Length: 16695} {RNA1509_55508} {RNA1310_19597} {RNA815_31859}
6. MligTC455_01013 5 0.11 Mlig455_052006

Neo: -

Age: -

 0.956 - - 0.956 - - - Mlig455_052006 {REF} {Length: 339} {NoTransDecoderORF} {RNA1509_51930} {RNA1310_94351} {RNA815_9662}
7. MligTC455_07648 3 0.06 Mlig455_018077

Neo: -

Age: -

 0.956 - - 0.956 - - - Mlig455_018077 {REF} {Length: 1182}
8. MligTC455_16859 114 2.38 Mlig455_042264

Neo: -

Age: -

 0.956 - - 0.956 - - - Mlig455_042264 {REF} {Length: 1624} {RNA1310_93649}
9. MligTC455_17431 150 3.13 Mlig455_010055, Mlig455_063265

Neo: -

Age: -

 PPP2R2A 0.953 - - 0.953 - - -

Mlig455_010055 {REF} {Length: 4204} {Pfam: WD domain, G-beta repeat [PF00400.34, score=44.6]} {Human: ENSG00000221914, PPP2R2A, protein phosphatase 2 regulatory subunit Balpha, [RH, Score=598, Expect=0.0]; ENSG00000175470, PPP2R2D, protein phosphatase 2 regulatory subunit Bdelta, [RH, Score=594, Expect=0.0]; ENSG00000156475, PPP2R2B, protein phosphatase 2 regulatory subunit Bbeta, [RH, Score=590, Expect=0.0]; ENSG00000074211, PPP2R2C, protein phosphatase 2 regulatory subunit Bgamma, [RH, Score=578, Expect=0.0]} {Mouse: ENSMUSG00000022052, Ppp2r2a, protein phosphatase 2, regulatory subunit B, alpha, [RH, Score=598, Expect=0.0]; ENSMUSG00000041769, Ppp2r2d, protein phosphatase 2, regulatory subunit B, delta, [RH, Score=596, Expect=0.0]; ENSMUSG00000024500, Ppp2r2b, protein phosphatase 2, regulatory subunit B, beta, [RH, Score=577, Expect=0.0]; ENSMUSG00000029120, Ppp2r2c, protein phosphatase 2, regulatory subunit B, gamma, [RH, Score=574, Expect=0.0]} {Dmel: FBgn0004889, tws, twins, [RH, Score=585, Expect=0.0]} {Celegans: WBGene00006352, sur-6, Serine/threonine-protein phosphatase 2A regulatory subunit sur-6, [RH, Score=548, Expect=0.0]} {Smed: dd_Smed_v6_5857_0_1, dd_Smed_v6_5857_0_1, [RH, Score=536, Expect=0.0]} {RNA1509_26565} {RNA1310_5980.2} {RNA815_10468}

Mlig455_063265 {REF} {Length: 5058} {Pfam: WD domain, G-beta repeat [PF00400.34, score=44.9]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=19.1]} {Human: ENSG00000221914, PPP2R2A, protein phosphatase 2 regulatory subunit Balpha, [RH, Score=595, Expect=0.0]; ENSG00000175470, PPP2R2D, protein phosphatase 2 regulatory subunit Bdelta, [RH, Score=592, Expect=0.0]; ENSG00000156475, PPP2R2B, protein phosphatase 2 regulatory subunit Bbeta, [RH, Score=587, Expect=0.0]; ENSG00000074211, PPP2R2C, protein phosphatase 2 regulatory subunit Bgamma, [RH, Score=575, Expect=0.0]} {Mouse: ENSMUSG00000022052, Ppp2r2a, protein phosphatase 2, regulatory subunit B, alpha, [RH, Score=595, Expect=0.0]; ENSMUSG00000041769, Ppp2r2d, protein phosphatase 2, regulatory subunit B, delta, [RH, Score=593, Expect=0.0]; ENSMUSG00000024500, Ppp2r2b, protein phosphatase 2, regulatory subunit B, beta, [RH, Score=574, Expect=0.0]; ENSMUSG00000029120, Ppp2r2c, protein phosphatase 2, regulatory subunit B, gamma, [RH, Score=571, Expect=0.0]} {Dmel: FBgn0004889, tws, twins, [RH, Score=582, Expect=0.0]} {Celegans: WBGene00006352, sur-6, Serine/threonine-protein phosphatase 2A regulatory subunit sur-6, [RH, Score=544, Expect=0.0]} {Smed: dd_Smed_v6_5857_0_1, dd_Smed_v6_5857_0_1, [RH, Score=533, Expect=0.0]} {RNA1509_40500} {RNA1310_5980.1, RNA1509_40500} {RNA1509_40500, RNA815_10468}
10. MligTC455_09684 20 0.41 Mlig455_021356

Neo: -

Age: -

 0.952 - - 0.952 - - - Mlig455_021356 {REF} {Length: 328} {NoTransDecoderORF} {RNA1310_113673}
11. MligTC455_20019 41 0.86 Mlig455_048024

Neo: -

Age: -

 0.952 - - 0.952 - - - Mlig455_048024 {REF} {Length: 549} {NoTransDecoderORF} {RNA1310_57910} {RNA815_64707}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA