M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_37883

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_37883 671 13.97 Mlig455_020369

Neo: -

Age: -

 MAN2A2 Mlig455_020369 {REF} {Length: 4679} {Pfam: Glycosyl hydrolases family 38 N-terminal domain [PF01074.24, score=175.2]; Glycosyl hydrolases family 38 C-terminal domain [PF07748.15, score=59.4]; Alpha mannosidase middle domain [PF09261.13, score=38.6]; WD domain, G-beta repeat [PF00400.34, score=34.5]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=29.5]; Eukaryotic translation initiation factor eIF2A [PF08662.13, score=24.0]} {Human: ENSG00000196547, MAN2A2, mannosidase alpha class 2A member 2, [Score=538, Expect=1e-169]; ENSG00000112893, MAN2A1, mannosidase alpha class 2A member 1, [Score=532, Expect=2e-167]} {Mouse: ENSMUSG00000038886, Man2a2, mannosidase 2, alpha 2, [Score=558, Expect=4e-177]} {Dmel: FBgn0011740, alpha-Man-IIa, alpha-Mannosidase class II a, [Score=470, Expect=7e-145]} {Celegans: WBGene00010284, aman-2, Alpha-mannosidase, [Score=489, Expect=9e-152]} {Smed: dd_Smed_v6_8703_0_1, dd_Smed_v6_8703_0_1, [Score=447, Expect=4e-136]} {RNA1509_5650} {RNA1310_2000} {RNA815_3480}

Cumulative graph for MligTC455_37883

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.023 4.069 0.36032 1.00000
RegionR2 0.742 4.069 0.12988 0.44725
RegionR3 0.081 4.069 0.82992 1.00000
RegionR4 -0.864 4.069 0.05546 0.20701
RegionR5 0.282 4.069 0.38399 0.73882
RegionR6 -0.066 4.069 0.86718 1.00000
RegionR7 0.461 4.069 0.35817 0.99466
RegionR8 0.387 4.069 0.54598 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.552 4.069 0.77254 1.00000
RegenerationR2 0.702 4.069 0.05576 0.38887
RegenerationR3 0.956 4.069 0.02429 0.28105
RegenerationR4 1.226 4.069 0.00449 0.09311
RegenerationR5 0.817 4.069 0.02689 0.27837
RegenerationR6 1.174 4.069 0.00664 0.09967
RegenerationBL 1.102 4.069 0.02526 0.17482
RegenerationTP -0.429 4.069 0.49174 0.89638


Genes with expression patterns similar to MligTC455_37883

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_37883 671 13.97 Mlig455_020369

Neo: -

Age: -

 MAN2A2 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_020369 {REF} {Length: 4679} {Pfam: Glycosyl hydrolases family 38 N-terminal domain [PF01074.24, score=175.2]; Glycosyl hydrolases family 38 C-terminal domain [PF07748.15, score=59.4]; Alpha mannosidase middle domain [PF09261.13, score=38.6]; WD domain, G-beta repeat [PF00400.34, score=34.5]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=29.5]; Eukaryotic translation initiation factor eIF2A [PF08662.13, score=24.0]} {Human: ENSG00000196547, MAN2A2, mannosidase alpha class 2A member 2, [Score=538, Expect=1e-169]; ENSG00000112893, MAN2A1, mannosidase alpha class 2A member 1, [Score=532, Expect=2e-167]} {Mouse: ENSMUSG00000038886, Man2a2, mannosidase 2, alpha 2, [Score=558, Expect=4e-177]} {Dmel: FBgn0011740, alpha-Man-IIa, alpha-Mannosidase class II a, [Score=470, Expect=7e-145]} {Celegans: WBGene00010284, aman-2, Alpha-mannosidase, [Score=489, Expect=9e-152]} {Smed: dd_Smed_v6_8703_0_1, dd_Smed_v6_8703_0_1, [Score=447, Expect=4e-136]} {RNA1509_5650} {RNA1310_2000} {RNA815_3480}
2. MligTC455_34256 621 12.94 Mlig455_031076, Mlig455_031110

Neo: -

Age: -

 DNAJC16 1.733 0.950 - - 0.783 - -

Mlig455_031076 {REF} {Length: 3558} {TRANSSPLICED} {Pfam: DnaJ domain [PF00226.33, score=82.3]; Thioredoxin [PF00085.22, score=19.9]} {Human: ENSG00000116138, DNAJC16, DnaJ heat shock protein family (Hsp40) member C16, [RH, Score=267, Expect=3e-77]} {Mouse: ENSMUSG00000040697, Dnajc16, DnaJ heat shock protein family (Hsp40) member C16, [RH, Score=276, Expect=8e-81]} {Dmel: FBgn0058178, CG40178, [RH, Score=276, Expect=7e-81]} {Celegans: WBGene00001026, dnj-8, DNaJ domain (Prokaryotic heat shock protein), [RH, Score=292, Expect=2e-86]} {Smed: dd_Smed_v6_11169_0_1, dd_Smed_v6_11169_0_1, [RH, Score=152, Expect=7e-42]} {RNA1509_14527} {RNA1310_7652, RNA1509_14527} {RNA1509_14527, RNA815_8524}

Mlig455_031110 {REF} {Length: 3948} {TRANSSPLICED} {Pfam: DnaJ domain [PF00226.33, score=81.6]; Thioredoxin [PF00085.22, score=19.9]} {Human: ENSG00000116138, DNAJC16, DnaJ heat shock protein family (Hsp40) member C16, [RH, Score=266, Expect=6e-77]} {Mouse: ENSMUSG00000040697, Dnajc16, DnaJ heat shock protein family (Hsp40) member C16, [RH, Score=275, Expect=2e-80]} {Dmel: FBgn0058178, CG40178, [RH, Score=273, Expect=8e-80]} {Celegans: WBGene00001026, dnj-8, DNaJ domain (Prokaryotic heat shock protein), [RH, Score=291, Expect=3e-86]} {Smed: dd_Smed_v6_11169_0_1, dd_Smed_v6_11169_0_1, [RH, Score=151, Expect=1e-41]} {RNA1509_14527, RNA1509_33204, RNA1509_51646} {RNA1310_7652, RNA1509_33204, RNA1509_51646} {RNA1509_33204, RNA1509_51646, RNA815_8524}
3. MligTC455_22886 931 19.39 Mlig455_021487, Mlig455_062014, Mlig455_063218, Mlig455_067371

Neo: -

Age: -

 NIPBL 0.972 - - - 0.972 - -

Mlig455_021487 {REF} {Length: 8862} {TRANSSPLICED} {Pfam: Sister chromatid cohesion C-terminus [PF12830.9, score=203.2]; HEAT repeat associated with sister chromatid cohesion [PF12765.9, score=42.2]; non-SMC mitotic condensation complex subunit 1 [PF12717.9, score=33.7]; HEAT repeat [PF02985.24, score=24.0]} {Human: ENSG00000164190, NIPBL, NIPBL, cohesin loading factor, [RH, Score=1256, Expect=0.0]} {Mouse: ENSMUSG00000022141, Nipbl, NIPBL cohesin loading factor, [RH, Score=1258, Expect=0.0]} {Dmel: FBgn0026401, Nipped-B, [RH, Score=896, Expect=0.0]} {Celegans: WBGene00004166, pqn-85, Nipped-B-like protein pqn-85, [RH, Score=694, Expect=0.0]} {Smed: dd_Smed_v6_3927_0_2, dd_Smed_v6_3927_0_2, [RH, Score=1231, Expect=0.0]} {RNA1509_3698} {RNA1310_836.2} {RNA815_211.1}

Mlig455_062014 {REF} {Length: 8611} {Pfam: Sister chromatid cohesion C-terminus [PF12830.9, score=202.8]; HEAT repeat associated with sister chromatid cohesion [PF12765.9, score=42.3]; non-SMC mitotic condensation complex subunit 1 [PF12717.9, score=33.3]; HEAT repeat [PF02985.24, score=24.4]} {Human: ENSG00000164190, NIPBL, NIPBL, cohesin loading factor, [RH, Score=1252, Expect=0.0]} {Mouse: ENSMUSG00000022141, Nipbl, NIPBL cohesin loading factor, [RH, Score=1255, Expect=0.0]} {Dmel: FBgn0026401, Nipped-B, [RH, Score=892, Expect=0.0]} {Celegans: WBGene00004166, pqn-85, Nipped-B-like protein pqn-85, [RH, Score=693, Expect=0.0]} {Smed: dd_Smed_v6_3927_0_1, dd_Smed_v6_3927_0_1, [RH, Score=1239, Expect=0.0]} {RNA1509_40869} {RNA1310_836.1} {RNA815_211.1}

Mlig455_063218 {REF} {Length: 2231} {TRANSSPLICED} {Human: ENSG00000164190, NIPBL, NIPBL, cohesin loading factor, [Score=57.0, Expect=8e-08]} {Mouse: ENSMUSG00000022141, Nipbl, NIPBL cohesin loading factor, [Score=57.4, Expect=5e-08]} {Dmel: FBgn0026401, Nipped-B, [Score=48.9, Expect=1e-05]} {Smed: dd_Smed_v6_8759_0_1, dd_Smed_v6_8759_0_1, [Score=56.6, Expect=4e-08]} {RNA1509_40869} {RNA1310_12124} {RNA815_11735}

Mlig455_067371 {REF} {Length: 7885} {Pfam: Sister chromatid cohesion C-terminus [PF12830.9, score=203.2]; HEAT repeat associated with sister chromatid cohesion [PF12765.9, score=42.5]; non-SMC mitotic condensation complex subunit 1 [PF12717.9, score=33.9]; HEAT repeat [PF02985.24, score=24.0]} {Human: ENSG00000164190, NIPBL, NIPBL, cohesin loading factor, [RH, Score=1252, Expect=0.0]} {Mouse: ENSMUSG00000022141, Nipbl, NIPBL cohesin loading factor, [RH, Score=1256, Expect=0.0]} {Dmel: FBgn0026401, Nipped-B, [RH, Score=895, Expect=0.0]} {Celegans: WBGene00004166, pqn-85, Nipped-B-like protein pqn-85, [RH, Score=693, Expect=0.0]} {Smed: dd_Smed_v6_3927_0_1, dd_Smed_v6_3927_0_1, [RH, Score=1230, Expect=0.0]} {RNA1509_2412, RNA1509_40869} {RNA1310_836.1, RNA1509_2412} {RNA1509_2412, RNA815_211.1}
4. MligTC455_34266 298 6.2 Mlig455_000718

Neo: Neoblast, stringent

Age: Down-Up-Down

Region-enriched R5: 3.400/0.00000

 SEL1L 0.965 - - - 0.965 - - Mlig455_000718 {REF} {Length: 3660} {TRANSSPLICED} {Pfam: Sel1 repeat [PF08238.14, score=93.6]; MYND finger [PF01753.20, score=38.5]; Tetratricopeptide repeat [PF00515.30, score=36.0]; Tetratricopeptide repeat [PF07719.19, score=33.5]; Tetratricopeptide repeat [PF13432.8, score=28.8]; Tetratricopeptide repeat [PF13424.8, score=28.0]; Tetratricopeptide repeat [PF13181.8, score=26.2]} {Human: ENSG00000071537, SEL1L, SEL1L, ERAD E3 ligase adaptor subunit, [Score=72.8, Expect=2e-12]} {Mouse: ENSMUSG00000020964, Sel1l, sel-1 suppressor of lin-12-like (C. elegans), [Score=72.4, Expect=2e-12]} {Dmel: FBgn0028475, Hrd3, HMG-coA reductase degradation 3, [Score=65.1, Expect=2e-10]} {Celegans: WBGene00004759, sel-1, SEL-1; Suppressor/Enhancer of Lin-12, [Score=49.3, Expect=1e-05]} {Smed: dd_Smed_v6_3464_0_2, dd_Smed_v6_3464_0_2, [Score=73.9, Expect=2e-13]} {RNA1509_34954, RNA1509_44136, RNA1509_52557, RNA1509_57871} {RNA1310_2863.2, RNA1509_34954, RNA1509_44136, RNA1509_57871} {RNA1509_34954, RNA1509_44136, RNA1509_57871, RNA815_1704}
5. MligTC455_48078 569 11.85 Mlig455_046853

Neo: -

Age: logFC(26M/2M)=0.753

 0.963 - - - - 0.963 - Mlig455_046853 {REF} {Length: 2156} {TRANSSPLICED} {RNA1509_16364} {RNA1310_13050.1} {RNA815_7204}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA