Data search


search
Exact
Search

Results for MligTC455_38011

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_38011 1117 23.27 Mlig455_015023, Mlig455_038427, Mlig455_038633

Neo: -

Age: -

Region-enriched R4: 1.340/0.04321

SRGAP1

Mlig455_015023 {REF} {Length: 7279} {Pfam: RhoGAP domain [PF00620.29, score=141.7]; SH3 domain [PF00018.30, score=43.9]; Fes/CIP4, and EFC/F-BAR homology domain [PF00611.25, score=39.5]; Variant SH3 domain [PF14604.8, score=37.4]; Variant SH3 domain [PF07653.19, score=19.8]} {Human: ENSG00000196935, SRGAP1, SLIT-ROBO Rho GTPase activating protein 1, [RH, Score=452, Expect=1e-141]; ENSG00000196220, SRGAP3, SLIT-ROBO Rho GTPase activating protein 3, [RH, Score=444, Expect=2e-138]} {Mouse: ENSMUSG00000030257, Srgap3, SLIT-ROBO Rho GTPase activating protein 3, [RH, Score=444, Expect=2e-138]; ENSMUSG00000020121, Srgap1, SLIT-ROBO Rho GTPase activating protein 1, [RH, Score=444, Expect=2e-138]; ENSMUSG00000026425, Srgap2, SLIT-ROBO Rho GTPase activating protein 2, [RH, Score=424, Expect=3e-131]} {Dmel: FBgn0036257, RhoGAP68F, Rho GTPase activating protein at 68F, [Score=72.4, Expect=8e-13]} {Celegans: WBGene00006406, srgp-1, Slit-Robo GAP homolog, [Score=333, Expect=4e-98]} {Smed: dd_Smed_v6_5482_0_1, dd_Smed_v6_5482_0_1, [RH, Score=377, Expect=9e-114]} {RNA1509_42351, RNA1509_52569} {RNA1310_3232.1, RNA1509_42351, RNA1509_52569} {RNA1509_42351, RNA1509_52569, RNA815_5655.1}

Mlig455_038427 {REF} {Length: 7513} {Pfam: RhoGAP domain [PF00620.29, score=141.7]; SH3 domain [PF00018.30, score=43.9]; Fes/CIP4, and EFC/F-BAR homology domain [PF00611.25, score=37.9]; Variant SH3 domain [PF14604.8, score=37.4]; Variant SH3 domain [PF07653.19, score=19.8]} {Human: ENSG00000196935, SRGAP1, SLIT-ROBO Rho GTPase activating protein 1, [RH, Score=451, Expect=6e-141]; ENSG00000196220, SRGAP3, SLIT-ROBO Rho GTPase activating protein 3, [RH, Score=442, Expect=1e-137]} {Mouse: ENSMUSG00000030257, Srgap3, SLIT-ROBO Rho GTPase activating protein 3, [RH, Score=443, Expect=5e-138]; ENSMUSG00000020121, Srgap1, SLIT-ROBO Rho GTPase activating protein 1, [RH, Score=442, Expect=6e-138]; ENSMUSG00000026425, Srgap2, SLIT-ROBO Rho GTPase activating protein 2, [RH, Score=422, Expect=2e-130]} {Dmel: FBgn0036257, RhoGAP68F, Rho GTPase activating protein at 68F, [Score=72.4, Expect=7e-13]} {Celegans: WBGene00006406, srgp-1, Slit-Robo GAP homolog, [Score=333, Expect=6e-98]} {Smed: dd_Smed_v6_5482_0_1, dd_Smed_v6_5482_0_1, [RH, Score=378, Expect=4e-114]} {RNA1509_52569} {RNA1310_3232.1} {RNA815_5655.1}

Mlig455_038633 {REF} {Length: 7108} {Pfam: RhoGAP domain [PF00620.29, score=140.8]; SH3 domain [PF00018.30, score=43.9]; Fes/CIP4, and EFC/F-BAR homology domain [PF00611.25, score=39.5]; Variant SH3 domain [PF14604.8, score=37.5]; Variant SH3 domain [PF07653.19, score=19.8]} {Human: ENSG00000196935, SRGAP1, SLIT-ROBO Rho GTPase activating protein 1, [RH, Score=448, Expect=7e-140]; ENSG00000196220, SRGAP3, SLIT-ROBO Rho GTPase activating protein 3, [RH, Score=437, Expect=1e-135]} {Mouse: ENSMUSG00000020121, Srgap1, SLIT-ROBO Rho GTPase activating protein 1, [RH, Score=439, Expect=1e-136]; ENSMUSG00000030257, Srgap3, SLIT-ROBO Rho GTPase activating protein 3, [RH, Score=437, Expect=5e-136]; ENSMUSG00000026425, Srgap2, SLIT-ROBO Rho GTPase activating protein 2, [RH, Score=421, Expect=7e-130]} {Dmel: FBgn0036257, RhoGAP68F, Rho GTPase activating protein at 68F, [Score=68.9, Expect=9e-12]} {Celegans: WBGene00006406, srgp-1, Slit-Robo GAP homolog, [RH, Score=328, Expect=4e-96]} {Smed: dd_Smed_v6_5482_0_1, dd_Smed_v6_5482_0_1, [RH, Score=375, Expect=7e-113]} {RNA1509_7531} {RNA1310_3232.1, RNA1509_7531} {RNA1509_7531, RNA815_5655.1}

Cumulative graph for MligTC455_38011

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.789 4.665 0.11582 0.70351
RegionR2 0.549 4.665 0.27391 0.65883
RegionR3 0.465 4.665 0.28008 0.82412
RegionR4 1.34 4.665 0.00625 0.04321
RegionR5 0.763 4.665 0.05715 0.20597
RegionR6 0.985 4.665 0.01558 0.21896
RegionR7 -1.087 4.665 0.15797 0.73412
RegionR8 -0.226 4.665 0.75592 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 3.258 4.665 0.10490 0.82655
RegenerationR2 0.175 4.665 0.61845 0.92277
RegenerationR3 0.696 4.665 0.08166 0.46909
RegenerationR4 0.049 4.665 0.90876 1.00000
RegenerationR5 0.509 4.665 0.17614 0.60542
RegenerationR6 -0.127 4.665 0.74858 0.95155
RegenerationBL 1.386 4.665 0.00184 0.03413
RegenerationTP 0.946 4.665 0.08725 0.46621


Genes with expression patterns similar to MligTC455_38011

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_38011 1117 23.27 Mlig455_015023, Mlig455_038427, Mlig455_038633

Neo: -

Age: -

Region-enriched R4: 1.340/0.04321

SRGAP1 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_015023 {REF} {Length: 7279} {Pfam: RhoGAP domain [PF00620.29, score=141.7]; SH3 domain [PF00018.30, score=43.9]; Fes/CIP4, and EFC/F-BAR homology domain [PF00611.25, score=39.5]; Variant SH3 domain [PF14604.8, score=37.4]; Variant SH3 domain [PF07653.19, score=19.8]} {Human: ENSG00000196935, SRGAP1, SLIT-ROBO Rho GTPase activating protein 1, [RH, Score=452, Expect=1e-141]; ENSG00000196220, SRGAP3, SLIT-ROBO Rho GTPase activating protein 3, [RH, Score=444, Expect=2e-138]} {Mouse: ENSMUSG00000030257, Srgap3, SLIT-ROBO Rho GTPase activating protein 3, [RH, Score=444, Expect=2e-138]; ENSMUSG00000020121, Srgap1, SLIT-ROBO Rho GTPase activating protein 1, [RH, Score=444, Expect=2e-138]; ENSMUSG00000026425, Srgap2, SLIT-ROBO Rho GTPase activating protein 2, [RH, Score=424, Expect=3e-131]} {Dmel: FBgn0036257, RhoGAP68F, Rho GTPase activating protein at 68F, [Score=72.4, Expect=8e-13]} {Celegans: WBGene00006406, srgp-1, Slit-Robo GAP homolog, [Score=333, Expect=4e-98]} {Smed: dd_Smed_v6_5482_0_1, dd_Smed_v6_5482_0_1, [RH, Score=377, Expect=9e-114]} {RNA1509_42351, RNA1509_52569} {RNA1310_3232.1, RNA1509_42351, RNA1509_52569} {RNA1509_42351, RNA1509_52569, RNA815_5655.1}

Mlig455_038427 {REF} {Length: 7513} {Pfam: RhoGAP domain [PF00620.29, score=141.7]; SH3 domain [PF00018.30, score=43.9]; Fes/CIP4, and EFC/F-BAR homology domain [PF00611.25, score=37.9]; Variant SH3 domain [PF14604.8, score=37.4]; Variant SH3 domain [PF07653.19, score=19.8]} {Human: ENSG00000196935, SRGAP1, SLIT-ROBO Rho GTPase activating protein 1, [RH, Score=451, Expect=6e-141]; ENSG00000196220, SRGAP3, SLIT-ROBO Rho GTPase activating protein 3, [RH, Score=442, Expect=1e-137]} {Mouse: ENSMUSG00000030257, Srgap3, SLIT-ROBO Rho GTPase activating protein 3, [RH, Score=443, Expect=5e-138]; ENSMUSG00000020121, Srgap1, SLIT-ROBO Rho GTPase activating protein 1, [RH, Score=442, Expect=6e-138]; ENSMUSG00000026425, Srgap2, SLIT-ROBO Rho GTPase activating protein 2, [RH, Score=422, Expect=2e-130]} {Dmel: FBgn0036257, RhoGAP68F, Rho GTPase activating protein at 68F, [Score=72.4, Expect=7e-13]} {Celegans: WBGene00006406, srgp-1, Slit-Robo GAP homolog, [Score=333, Expect=6e-98]} {Smed: dd_Smed_v6_5482_0_1, dd_Smed_v6_5482_0_1, [RH, Score=378, Expect=4e-114]} {RNA1509_52569} {RNA1310_3232.1} {RNA815_5655.1}

Mlig455_038633 {REF} {Length: 7108} {Pfam: RhoGAP domain [PF00620.29, score=140.8]; SH3 domain [PF00018.30, score=43.9]; Fes/CIP4, and EFC/F-BAR homology domain [PF00611.25, score=39.5]; Variant SH3 domain [PF14604.8, score=37.5]; Variant SH3 domain [PF07653.19, score=19.8]} {Human: ENSG00000196935, SRGAP1, SLIT-ROBO Rho GTPase activating protein 1, [RH, Score=448, Expect=7e-140]; ENSG00000196220, SRGAP3, SLIT-ROBO Rho GTPase activating protein 3, [RH, Score=437, Expect=1e-135]} {Mouse: ENSMUSG00000020121, Srgap1, SLIT-ROBO Rho GTPase activating protein 1, [RH, Score=439, Expect=1e-136]; ENSMUSG00000030257, Srgap3, SLIT-ROBO Rho GTPase activating protein 3, [RH, Score=437, Expect=5e-136]; ENSMUSG00000026425, Srgap2, SLIT-ROBO Rho GTPase activating protein 2, [RH, Score=421, Expect=7e-130]} {Dmel: FBgn0036257, RhoGAP68F, Rho GTPase activating protein at 68F, [Score=68.9, Expect=9e-12]} {Celegans: WBGene00006406, srgp-1, Slit-Robo GAP homolog, [RH, Score=328, Expect=4e-96]} {Smed: dd_Smed_v6_5482_0_1, dd_Smed_v6_5482_0_1, [RH, Score=375, Expect=7e-113]} {RNA1509_7531} {RNA1310_3232.1, RNA1509_7531} {RNA1509_7531, RNA815_5655.1}
2. MligTC455_45213 458 9.54 Mlig455_025798

Neo: -

Age: Up-Down-Down

PARP1 1.71 - - - - 0.758 0.952 Mlig455_025798 {REF} {Length: 10432} {TRANSSPLICED} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=238.2]; Ankyrin repeats (many copies) [PF13637.8, score=214.8]; Ankyrin repeat [PF00023.32, score=149.8]; Ankyrin repeats (many copies) [PF13857.8, score=145.5]; Ankyrin repeat [PF13606.8, score=141.7]; Poly(ADP-ribose) polymerase catalytic domain [PF00644.22, score=77.2]; WGR domain [PF05406.17, score=66.7]; Poly(ADP-ribose) polymerase, regulatory domain [PF02877.16, score=51.9]} {Human: ENSG00000143799, PARP1, poly(ADP-ribose) polymerase 1, [Score=150, Expect=1e-35]} {Mouse: ENSMUSG00000026496, Parp1, poly (ADP-ribose) polymerase family, member 1, [Score=147, Expect=9e-35]} {Dmel: FBgn0010247, Parp, Poly-(ADP-ribose) polymerase, [Score=129, Expect=2e-29]} {Celegans: WBGene00004053, tank-1, Tankyrase-like protein, [RH, Score=188, Expect=4e-47]} {Smed: dd_Smed_v6_10338_0_1, dd_Smed_v6_10338_0_1, [Score=131, Expect=3e-30]} {RNA1509_5179, RNA1509_5717} {RNA1310_174.1, RNA1509_5179, RNA1509_5717} {RNA1509_5179, RNA1509_5717, RNA815_1091}
3. MligTC455_48084 804 16.75 Mlig455_041334, Mlig455_056209, Mlig455_056219

Neo: -

Age: Up-Down-Down

CHPT1 0.963 - - - 0.963 - -

Mlig455_041334 {REF} {Length: 3741} {TRANSSPLICED} {Pfam: CDP-alcohol phosphatidyltransferase [PF01066.23, score=59.2]} {Human: ENSG00000111666, CHPT1, choline phosphotransferase 1, [Score=227, Expect=7e-71]} {Mouse: ENSMUSG00000060002, Chpt1, choline phosphotransferase 1, [Score=226, Expect=7e-71]} {Dmel: FBgn0033844, bbc, bb in a boxcar, [Score=212, Expect=2e-65]} {Celegans: WBGene00009057, cept-1, Choline/EthanolaminePhosphoTransferase, [Score=192, Expect=5e-58]} {Smed: dd_Smed_v6_7722_0_1, dd_Smed_v6_7722_0_1, [Score=203, Expect=5e-62]} {RNA1509_37840} {RNA1310_15138} {RNA815_21435}

Mlig455_056209 {REF} {Length: 3819} {TRANSSPLICED} {Pfam: CDP-alcohol phosphatidyltransferase [PF01066.23, score=59.2]} {Human: ENSG00000111666, CHPT1, choline phosphotransferase 1, [Score=243, Expect=1e-76]} {Mouse: ENSMUSG00000060002, Chpt1, choline phosphotransferase 1, [Score=243, Expect=9e-77]} {Dmel: FBgn0033844, bbc, bb in a boxcar, [Score=223, Expect=5e-69]} {Celegans: WBGene00009057, cept-1, Choline/EthanolaminePhosphoTransferase, [Score=201, Expect=4e-61]} {Smed: dd_Smed_v6_7722_0_1, dd_Smed_v6_7722_0_1, [Score=219, Expect=2e-67]} {RNA1509_37840, RNA1509_48200} {RNA1310_15138, RNA1509_37840, RNA1509_48200} {RNA1509_37840, RNA1509_48200, RNA815_21435}

Mlig455_056219 {REF} {Length: 3503} {TRANSSPLICED} {Pfam: CDP-alcohol phosphatidyltransferase [PF01066.23, score=43.2]} {Human: ENSG00000111666, CHPT1, choline phosphotransferase 1, [Score=191, Expect=3e-57]} {Mouse: ENSMUSG00000060002, Chpt1, choline phosphotransferase 1, [Score=191, Expect=1e-57]} {Dmel: FBgn0033844, bbc, bb in a boxcar, [Score=178, Expect=1e-52]} {Celegans: WBGene00009057, cept-1, Choline/EthanolaminePhosphoTransferase, [Score=162, Expect=9e-47]} {Smed: dd_Smed_v6_7722_0_1, dd_Smed_v6_7722_0_1, [Score=174, Expect=3e-51]} {RNA1509_37840} {RNA1310_15138} {RNA815_21435}
4. MligTC455_09337 505 10.51 Mlig455_037267

Neo: -

Age: Up-Down-Down

ZNF692 0.961 - - - 0.961 - - Mlig455_037267 {REF} {Length: 5634} {TRANSSPLICED} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=58.7]; C2H2-type zinc finger [PF13894.8, score=54.4]; Zinc-finger double domain [PF13465.8, score=41.9]; C2H2-type zinc-finger domain [PF13909.8, score=27.4]} {Human: ENSG00000171163, ZNF692, zinc finger protein 692, [RH, Score=106, Expect=2e-23]} {Mouse: ENSMUSG00000037243, Zfp692, zinc finger protein 692, [RH, Score=107, Expect=1e-23]} {Dmel: FBgn0032295, CG12299, [Score=102, Expect=5e-22]} {Celegans: WBGene00001324, eor-1, EOR-1, [Score=86.7, Expect=4e-17]} {Smed: dd_Smed_v6_14937_0_1, dd_Smed_v6_14937_0_1, [RH, Score=227, Expect=9e-63]} {RNA1509_9440} {RNA1310_11589} {RNA815_12610}
5. MligTC455_31640 655 13.64 Mlig455_010707

Neo: -

Age: logFC(26M/2M)=0.274

PUM2 0.957 - - - - - 0.957 Mlig455_010707 {REF} {Length: 5114} {TRANSSPLICED} {Pfam: Pumilio-family RNA binding repeat [PF00806.21, score=278.8]; CPL (NUC119) domain [PF08144.13, score=22.5]} {Human: ENSG00000055917, PUM2, pumilio RNA binding family member 2, [RH, Score=538, Expect=7e-178]; ENSG00000134644, PUM1, pumilio RNA binding family member 1, [RH, Score=530, Expect=2e-173]} {Mouse: ENSMUSG00000020594, Pum2, pumilio RNA-binding family member 2, [RH, Score=538, Expect=1e-177]; ENSMUSG00000106966, Pum1, pumilio RNA-binding family member 1, [RH, Score=531, Expect=5e-176]; ENSMUSG00000028580, Pum1, pumilio RNA-binding family member 1, [RH, Score=531, Expect=5e-176]} {Dmel: FBgn0003165, pum, pumilio, [RH, Score=520, Expect=3e-166]} {Celegans: WBGene00004245, puf-9, PUF (Pumilio/FBF) domain-containing, [RH, Score=403, Expect=5e-130]} {Smed: dd_Smed_v6_1677_0_1, dd_Smed_v6_1677_0_1, [RH, Score=513, Expect=1e-169]} {RNA1509_3045, RNA1509_32128, RNA1509_37493, RNA1509_41992, RNA1509_42182, RNA1509_46747} {RNA1310_2069.1, RNA1509_3045, RNA1509_32128, RNA1509_37493, RNA1509_41992, RNA1509_42182, RNA1509_46747} {RNA1509_3045, RNA1509_32128, RNA1509_37493, RNA1509_41992, RNA1509_42182, RNA1509_46747, RNA815_3734}
6. MligTC455_28448 313 6.52 Mlig455_034262, Mlig455_067299

Neo: -

Age: Up-Down-Down

HYDIN 0.952 - - - 0.952 - -

Mlig455_034262 {REF} {Length: 1874} {TRANSSPLICED} {Pfam: Family of unknown function (DUF6195) [PF19695.1, score=28.4]; Domain of unknown function (DUF5593) [PF18007.3, score=21.2]} {RNA1509_47947} {RNA1310_49333} {RNA815_12944}

Mlig455_067299 {REF} {Length: 2511} {TRANSSPLICED} {Human: ENSG00000283022, HYDIN, HYDIN, axonemal central pair apparatus protein, [Score=59.7, Expect=2e-08]; ENSG00000157423, HYDIN, HYDIN, axonemal central pair apparatus protein, [Score=59.7, Expect=2e-08]} {RNA1509_28768} {RNA1310_23952, RNA1509_28768} {RNA1509_28768, RNA815_3031.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA