TomoSeq data search

Data search

Results for MligTC455_38138

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_38138

4194

87.38

Mlig455_047164, Mlig455_048518

Neo: -

Age: -

RAC1

Mlig455_047164 {REF} {Length: 1586} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=184.5]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=78.4]; ADP-ribosylation factor family [PF00025.23, score=31.9]} {Human: ENSG00000136238, RAC1, Rac family small GTPase 1, [RH, Score=358, Expect=1e-127]; ENSG00000128340, RAC2, Rac family small GTPase 2, [RH, Score=355, Expect=1e-126]; ENSG00000169750, RAC3, Rac family small GTPase 3, [RH, Score=343, Expect=1e-121]} {Mouse: ENSMUSG00000001847, Rac1, Rac family small GTPase 1, [RH, Score=358, Expect=7e-128]; ENSMUSG00000033220, Rac2, Rac family small GTPase 2, [RH, Score=353, Expect=6e-126]; ENSMUSG00000018012, Rac3, Rac family small GTPase 3, [RH, Score=343, Expect=7e-122]} {Dmel: FBgn0010333, Rac1, [RH, Score=354, Expect=1e-126]} {Celegans: WBGene00000424, ced-10, Ras-related protein ced-10, [RH, Score=344, Expect=1e-122]} {Smed: dd_Smed_v6_610_0_1, dd_Smed_v6_610_0_1, [RH, Score=320, Expect=2e-113]} {RNA1509_12799, RNA1509_13654, RNA1509_20957, RNA1509_29576} {RNA1310_9753.1, RNA1509_12799, RNA1509_13654, RNA1509_20957, RNA1509_29576} {RNA1509_12799, RNA1509_13654, RNA1509_20957, RNA1509_29576, RNA815_3263}

Mlig455_048518 {REF} {Length: 1574} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=184.5]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=78.4]; ADP-ribosylation factor family [PF00025.23, score=31.9]} {Human: ENSG00000136238, RAC1, Rac family small GTPase 1, [RH, Score=358, Expect=1e-127]; ENSG00000128340, RAC2, Rac family small GTPase 2, [RH, Score=355, Expect=1e-126]; ENSG00000169750, RAC3, Rac family small GTPase 3, [RH, Score=343, Expect=1e-121]} {Mouse: ENSMUSG00000001847, Rac1, Rac family small GTPase 1, [RH, Score=358, Expect=7e-128]; ENSMUSG00000033220, Rac2, Rac family small GTPase 2, [RH, Score=353, Expect=6e-126]; ENSMUSG00000018012, Rac3, Rac family small GTPase 3, [RH, Score=343, Expect=7e-122]} {Dmel: FBgn0010333, Rac1, [RH, Score=354, Expect=1e-126]} {Celegans: WBGene00000424, ced-10, Ras-related protein ced-10, [RH, Score=344, Expect=1e-122]} {Smed: dd_Smed_v6_610_0_1, dd_Smed_v6_610_0_1, [RH, Score=320, Expect=2e-113]} {RNA1509_13654} {RNA1310_9753.1} {RNA815_3263}

Cumulative graph for MligTC455_38138

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-1.496	6.547	0.01374	0.33087
RegionR2	0.034	6.547	0.89005	1.00000
RegionR3	0.258	6.547	0.20096	0.74016
RegionR4	0.083	6.547	0.72848	1.00000
RegionR5	0.688	6.547	0.00019	0.00273
RegionR6	0.638	6.547	0.00124	0.04413
RegionR7	0.397	6.547	0.10076	0.60627
RegionR8	-0.602	6.547	0.08424	0.54990

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	0.577	6.547	0.48478	1.00000
RegenerationR2	-0.095	6.547	0.64623	0.93433
RegenerationR3	-0.01	6.547	0.96498	1.00000
RegenerationR4	0.258	6.547	0.25861	0.70655
RegenerationR5	-0.107	6.547	0.60311	0.91139
RegenerationR6	0.041	6.547	0.85413	1.00000
RegenerationBL	0.613	6.547	0.00850	0.09122
RegenerationTP	0.596	6.547	0.02742	0.27904

Genes with expression patterns similar to MligTC455_38138

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_38138	4194	87.38	Mlig455_047164, Mlig455_048518	Neo: - Age: -	RAC1	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_047164 {REF} {Length: 1586} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=184.5]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=78.4]; ADP-ribosylation factor family [PF00025.23, score=31.9]} {Human: ENSG00000136238, RAC1, Rac family small GTPase 1, [RH, Score=358, Expect=1e-127]; ENSG00000128340, RAC2, Rac family small GTPase 2, [RH, Score=355, Expect=1e-126]; ENSG00000169750, RAC3, Rac family small GTPase 3, [RH, Score=343, Expect=1e-121]} {Mouse: ENSMUSG00000001847, Rac1, Rac family small GTPase 1, [RH, Score=358, Expect=7e-128]; ENSMUSG00000033220, Rac2, Rac family small GTPase 2, [RH, Score=353, Expect=6e-126]; ENSMUSG00000018012, Rac3, Rac family small GTPase 3, [RH, Score=343, Expect=7e-122]} {Dmel: FBgn0010333, Rac1, [RH, Score=354, Expect=1e-126]} {Celegans: WBGene00000424, ced-10, Ras-related protein ced-10, [RH, Score=344, Expect=1e-122]} {Smed: dd_Smed_v6_610_0_1, dd_Smed_v6_610_0_1, [RH, Score=320, Expect=2e-113]} {RNA1509_12799, RNA1509_13654, RNA1509_20957, RNA1509_29576} {RNA1310_9753.1, RNA1509_12799, RNA1509_13654, RNA1509_20957, RNA1509_29576} {RNA1509_12799, RNA1509_13654, RNA1509_20957, RNA1509_29576, RNA815_3263} Mlig455_048518 {REF} {Length: 1574} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=184.5]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=78.4]; ADP-ribosylation factor family [PF00025.23, score=31.9]} {Human: ENSG00000136238, RAC1, Rac family small GTPase 1, [RH, Score=358, Expect=1e-127]; ENSG00000128340, RAC2, Rac family small GTPase 2, [RH, Score=355, Expect=1e-126]; ENSG00000169750, RAC3, Rac family small GTPase 3, [RH, Score=343, Expect=1e-121]} {Mouse: ENSMUSG00000001847, Rac1, Rac family small GTPase 1, [RH, Score=358, Expect=7e-128]; ENSMUSG00000033220, Rac2, Rac family small GTPase 2, [RH, Score=353, Expect=6e-126]; ENSMUSG00000018012, Rac3, Rac family small GTPase 3, [RH, Score=343, Expect=7e-122]} {Dmel: FBgn0010333, Rac1, [RH, Score=354, Expect=1e-126]} {Celegans: WBGene00000424, ced-10, Ras-related protein ced-10, [RH, Score=344, Expect=1e-122]} {Smed: dd_Smed_v6_610_0_1, dd_Smed_v6_610_0_1, [RH, Score=320, Expect=2e-113]} {RNA1509_13654} {RNA1310_9753.1} {RNA815_3263}
2.	MligTC455_44806	3661	76.27	Mlig455_028184	Neo: - Age: logFC(26M/2M)=0.297	WDR1	1.772	-	-	-	-	0.821	0.951	Mlig455_028184 {REF} {Length: 2588} {Pfam: WD domain, G-beta repeat [PF00400.34, score=150.0]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=88.2]; WD40 region of Ge1, enhancer of mRNA-decapping protein [PF16529.7, score=19.8]} {Human: ENSG00000071127, WDR1, WD repeat domain 1, [RH, Score=509, Expect=1e-174]} {Mouse: ENSMUSG00000005103, Wdr1, WD repeat domain 1, [RH, Score=503, Expect=4e-172]} {Dmel: FBgn0260049, flr, flare, [RH, Score=592, Expect=0.0]} {Celegans: WBGene00006810, unc-78, Actin-interacting protein 1, [RH, Score=480, Expect=3e-163]} {Smed: dd_Smed_v6_1739_0_1, dd_Smed_v6_1739_0_1, [RH, Score=546, Expect=0.0]} {RNA1509_12542, RNA1509_1371} {RNA1310_8575, RNA1509_12542} {RNA1509_12542, RNA815_2757}
3.	MligTC455_27877	14566	303.46	Mlig455_046947, Mlig455_068943	Neo: Int S/G2/M Age: - Regeneration-upregulated BL: 1.337 Regeneration-enriched BL: 1.337	DDX39B	1.714	-	-	-	-	0.745	0.969	Mlig455_046947 {REF} {Length: 1705} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=141.2]; Helicase conserved C-terminal domain [PF00271.33, score=92.8]; U3-containing 90S pre-ribosomal complex subunit [PF14617.8, score=33.4]; Type III restriction enzyme, res subunit [PF04851.17, score=29.8]} {Human: ENSG00000225859, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000235439, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000215425, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000225073, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000198563, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000229496, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000230624, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000123136, DDX39A, DExD-box helicase 39A, [RH, Score=699, Expect=0.0]} {Mouse: ENSMUSG00000019432, Ddx39b, DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B, [RH, Score=716, Expect=0.0]; ENSMUSG00000005481, Ddx39, DEAD (Asp-Glu-Ala-Asp) box polypeptide 39, [RH, Score=703, Expect=0.0]} {Dmel: FBgn0014189, Hel25E, Helicase at 25E, [RH, Score=699, Expect=0.0]} {Celegans: WBGene00001840, hel-1, Spliceosome RNA helicase DDX39B homolog, [RH, Score=654, Expect=0.0]} {Smed: dd_Smed_v6_724_0_1, dd_Smed_v6_724_0_1, [RH, Score=713, Expect=0.0]} {RNA1509_632} {RNA1310_17749} {RNA815_6753} Mlig455_068943 {REF} {Length: 1704} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=141.2]; Helicase conserved C-terminal domain [PF00271.33, score=92.8]; U3-containing 90S pre-ribosomal complex subunit [PF14617.8, score=33.4]; Type III restriction enzyme, res subunit [PF04851.17, score=29.8]} {Human: ENSG00000225859, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000235439, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000215425, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000225073, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000198563, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000229496, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000230624, DDX39B, DExD-box helicase 39B, [RH, Score=717, Expect=0.0]; ENSG00000123136, DDX39A, DExD-box helicase 39A, [RH, Score=699, Expect=0.0]} {Mouse: ENSMUSG00000019432, Ddx39b, DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B, [RH, Score=716, Expect=0.0]; ENSMUSG00000005481, Ddx39, DEAD (Asp-Glu-Ala-Asp) box polypeptide 39, [RH, Score=703, Expect=0.0]} {Dmel: FBgn0014189, Hel25E, Helicase at 25E, [RH, Score=699, Expect=0.0]} {Celegans: WBGene00001840, hel-1, Spliceosome RNA helicase DDX39B homolog, [RH, Score=654, Expect=0.0]} {Smed: dd_Smed_v6_724_0_1, dd_Smed_v6_724_0_1, [RH, Score=713, Expect=0.0]} {RNA1509_632} {RNA1310_17749, RNA1509_632} {RNA1509_632, RNA815_6753}
4.	MligTC455_44167	1076	22.43	Mlig455_059891	Neo: - Age: logFC(26M/2M)=0.416 Regeneration-upregulated BL: 1.576 Regeneration-enriched BL: 1.576	SRSF7	0.959	-	-	-	-	-	0.959	Mlig455_059891 {REF} {Length: 1013} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=61.9]; RNA recognition motif [PF16367.7, score=23.9]; Zinc knuckle [PF00098.25, score=22.0]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF13893.8, score=19.8]; Zinc knuckle [PF13917.8, score=19.5]} {Human: ENSG00000115875, SRSF7, serine and arginine rich splicing factor 7, [RH, Score=147, Expect=3e-45]} {Mouse: ENSMUSG00000024097, Srsf7, serine/arginine-rich splicing factor 7, [RH, Score=147, Expect=2e-45]} {Dmel: FBgn0028554, x16, x16 splicing factor, [RH, Score=105, Expect=5e-28]} {Celegans: WBGene00013293, Y57G11A.5, [Score=76.6, Expect=2e-18]} {Smed: dd_Smed_v6_2424_0_1, dd_Smed_v6_2424_0_1, [RH, Score=129, Expect=9e-39]} {RNA1509_37237, RNA1509_48999} {RNA1310_34684.1, RNA1509_48999} {RNA1509_48999, RNA815_20639}
5.	MligTC455_32249	712	14.83	Mlig455_063343	Neo: Irradiation Age: -	SIRT1	0.95	-	-	-	-	0.950	-	Mlig455_063343 {REF} {Length: 4216} {Pfam: Sir2 family [PF02146.19, score=203.3]} {Human: ENSG00000096717, SIRT1, sirtuin 1, [RH, Score=397, Expect=1e-126]} {Mouse: ENSMUSG00000020063, Sirt1, sirtuin 1, [RH, Score=394, Expect=2e-126]} {Dmel: FBgn0024291, Sirt1, Sirtuin 1, [RH, Score=381, Expect=4e-120]} {Celegans: WBGene00004800, sir-2.1, NAD-dependent protein deacetylase sir-2.1, [RH, Score=315, Expect=2e-97]} {Smed: dd_Smed_v6_12799_0_1, dd_Smed_v6_12799_0_1, [RH, Score=378, Expect=2e-122]} {RNA1509_7277} {RNA1310_2074.1} {RNA815_382}
6.	MligTC455_43256	1831	38.16	Mlig455_009455, Mlig455_009467	Neo: - Age: -	TCF12	0.95	-	-	-	-	-	0.950	Mlig455_009455 {REF} {Length: 2539} {TRANSSPLICED} {Pfam: Helix-loop-helix DNA-binding domain [PF00010.28, score=37.7]} {Human: ENSG00000140262, TCF12, transcription factor 12, [Score=145, Expect=5e-36]; ENSG00000071564, TCF3, transcription factor 3, [Score=142, Expect=5e-35]; ENSG00000196628, TCF4, transcription factor 4, [Score=142, Expect=5e-36]} {Mouse: ENSMUSG00000020167, Tcf3, transcription factor 3, [Score=144, Expect=4e-36]; ENSMUSG00000032228, Tcf12, transcription factor 12, [Score=144, Expect=2e-36]; ENSMUSG00000053477, Tcf4, transcription factor 4, [Score=142, Expect=5e-36]} {Dmel: FBgn0267821, da, daughterless, [Score=134, Expect=1e-32]} {Celegans: WBGene00001949, hlh-2, Helix Loop Helix, [RH, Score=104, Expect=6e-24]} {Smed: dd_Smed_v6_5579_0_1, dd_Smed_v6_5579_0_1, [Score=147, Expect=2e-37]} {RNA1509_39139, RNA1509_39299} {RNA1310_23539.2, RNA1509_39139, RNA1509_39299} {RNA1509_39139, RNA1509_39299, RNA815_9827.1} Mlig455_009467 {REF} {Length: 2515} {TRANSSPLICED} {Pfam: Helix-loop-helix DNA-binding domain [PF00010.28, score=37.7]} {Human: ENSG00000140262, TCF12, transcription factor 12, [Score=144, Expect=2e-36]; ENSG00000196628, TCF4, transcription factor 4, [Score=142, Expect=1e-35]; ENSG00000071564, TCF3, transcription factor 3, [Score=141, Expect=6e-35]} {Mouse: ENSMUSG00000032228, Tcf12, transcription factor 12, [Score=144, Expect=7e-36]; ENSMUSG00000020167, Tcf3, transcription factor 3, [Score=144, Expect=6e-36]; ENSMUSG00000053477, Tcf4, transcription factor 4, [Score=142, Expect=6e-36]} {Dmel: FBgn0267821, da, daughterless, [Score=134, Expect=1e-32]} {Celegans: WBGene00001949, hlh-2, Helix Loop Helix, [RH, Score=104, Expect=7e-24]} {Smed: dd_Smed_v6_5579_0_1, dd_Smed_v6_5579_0_1, [Score=147, Expect=3e-37]} {RNA1509_39139} {RNA1310_23539.2} {RNA815_9827.1}

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