M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_38364

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_38364 27 0.57 Mlig455_059831

Neo: -

Age: -

 Mlig455_059831 {REF} {Length: 869} {NoTransDecoderORF} {RNA1509_48204} {RNA1310_111202} {RNA815_2054.1}

Cumulative graph for MligTC455_38364

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.572 0.833 0.99957 1.00000
RegionR2 2.101 0.833 0.99934 1.00000
RegionR3 0.844 0.833 0.99931 1.00000
RegionR4 -1.905 0.833 0.99959 1.00000
RegionR5 -0.038 0.833 0.99936 1.00000
RegionR6 0.499 0.833 0.99978 1.00000
RegionR7 0.699 0.833 0.99986 1.00000
RegionR8 0.372 0.833 0.99982 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.382 0.833 0.99954 1.00000
RegenerationR2 0.773 0.833 0.75857 0.97610
RegenerationR3 2.608 0.833 0.52677 0.87005
RegenerationR4 3.396 0.833 0.52903 0.88387
RegenerationR5 1.302 0.833 0.70840 0.95483
RegenerationR6 4.031 0.833 0.39005 0.73002
RegenerationBL -0.563 0.833 0.99969 1.00000
RegenerationTP 3.891 0.833 0.65083 0.98924


Genes with expression patterns similar to MligTC455_38364

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_38364 27 0.57 Mlig455_059831

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_059831 {REF} {Length: 869} {NoTransDecoderORF} {RNA1509_48204} {RNA1310_111202} {RNA815_2054.1}
2. MligTC455_44757 573 11.93 Mlig455_027141, Mlig455_030701

Neo: -

Age: -

 0.98 - - - - 0.980 -

Mlig455_027141 {REF} {Length: 1533} {TRANSSPLICED} {tRNA: Val(TAC),pseudo, score=29.5} {Pfam: COMM domain [PF07258.16, score=21.7]} {RNA1509_28826} {RNA1310_33598} {RNA815_23398}

Mlig455_030701 {REF} {Length: 1622} {TRANSSPLICED} {tRNA: Val(TAC),pseudo, score=29.5} {Pfam: COMM domain [PF07258.16, score=21.7]} {RNA1509_28826} {RNA1310_33598} {RNA815_23398}
3. MligTC455_52929 36 0.76 Mlig455_055215

Neo: -

Age: -

 MAP3K19 0.98 - - - - 0.980 - Mlig455_055215 {REF} {Length: 3182} {Pfam: Protein kinase domain [PF00069.27, score=136.0]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=108.2]; PH domain [PF00169.31, score=31.0]; Fungal protein kinase [PF17667.3, score=29.5]} {Human: ENSG00000176601, MAP3K19, mitogen-activated protein kinase kinase kinase 19, [Score=116, Expect=6e-27]} {Mouse: ENSMUSG00000051590, Map3k19, mitogen-activated protein kinase kinase kinase 19, [Score=117, Expect=8e-28]} {Dmel: FBgn0014006, Ask1, Apoptotic signal-regulating kinase 1, [Score=102, Expect=2e-22]} {Celegans: WBGene00006941, wnk-1, Serine/threonine-protein kinase WNK, [Score=98.2, Expect=2e-21]} {Smed: dd_Smed_v6_4849_0_1, dd_Smed_v6_4849_0_1, [Score=105, Expect=6e-24]} {RNA1509_26827} {RNA1310_30186} {RNA815_26192}
4. MligTC455_28278 110 2.28 Mlig455_018484

Neo: -

Age: -

 0.974 - - - - 0.974 - Mlig455_018484 {REF} {Length: 1124} {NoTransDecoderORF} {RNA1509_35077} {RNA1310_17510.1} {RNA815_9674}
5. MligTC455_54448 21 0.44 Mlig455_013024

Neo: -

Age: -

 0.971 - - - - 0.971 - Mlig455_013024 {REF} {Length: 486} {RNA1509_42416} {RNA1310_122120}
6. MligTC455_48318 12 0.26 Mlig455_030589

Neo: -

Age: -

 0.968 - - - - 0.968 - Mlig455_030589 {REF} {Length: 3163}
7. MligTC455_16336 65 1.35 Mlig455_004452, Mlig455_015655, Mlig455_023763, Mlig455_037144, Mlig455_057438

Neo: -

Age: -

 0.967 - - - - 0.967 -

Mlig455_004452 {REF} {Length: 211} {NoTransDecoderORF} {RNA1310_41710} {RNA815_19764}

Mlig455_015655 {REF} {Length: 618} {NoTransDecoderORF} {RNA1310_41710} {RNA815_19764}

Mlig455_023763 {REF} {Length: 618} {NoTransDecoderORF} {RNA1310_41710} {RNA815_19764}

Mlig455_037144 {REF} {Length: 1001} {NoTransDecoderORF} {RNA1310_41710} {RNA815_19764}

Mlig455_057438 {REF} {Length: 743} {NoTransDecoderORF} {RNA1310_41710} {RNA815_19764}
8. MligTC455_42582 101 2.11 Mlig455_006503

Neo: -

Age: Up-Down-Down

 MOSPD1 0.967 - - - - 0.967 - Mlig455_006503 {REF} {Length: 3094} {TRANSSPLICED} {Pfam: MSP (Major sperm protein) domain [PF00635.28, score=49.6]} {Human: ENSG00000101928, MOSPD1, motile sperm domain containing 1, [RH, Score=93.6, Expect=1e-22]} {Mouse: ENSMUSG00000023074, Mospd1, motile sperm domain containing 1, [RH, Score=95.1, Expect=2e-23]} {RNA1509_17503} {RNA1310_37601} {RNA815_17755}
9. MligTC455_11873 182 3.8 Mlig455_064533

Neo: -

Age: -

Region-enriched R7: 6.862/0.00000
Region-enriched R8: 5.801/0.00001
Region-enriched R6: 4.321/0.00002

 TBX20 0.966 - - - - 0.966 - Mlig455_064533 {REF} {Length: 2157} {Pfam: T-box [PF00907.24, score=229.4]} {Human: ENSG00000164532, TBX20, T-box 20, [Score=259, Expect=6e-82]} {Mouse: ENSMUSG00000031965, Tbx20, T-box 20, [Score=259, Expect=3e-84]} {Dmel: FBgn0261963, mid, midline, [Score=254, Expect=1e-78]} {Celegans: WBGene00003106, mab-9, T-box protein 12, [Score=228, Expect=2e-71]} {Smed: dd_Smed_v6_19890_0_1, dd_Smed_v6_19890_0_1, [Score=259, Expect=6e-81]} {RNA1509_38966} {RNA1310_30620} {RNA815_7293.1}
10. MligTC455_30266 111 2.32 Mlig455_052913

Neo: -

Age: -

 0.964 - - - - 0.964 - Mlig455_052913 {REF} {Length: 741} {RNA1509_12647} {RNA1310_70871} {RNA815_7825}
11. MligTC455_28156 802 16.71 Mlig455_003147, Mlig455_032425, Mlig455_034911, Mlig455_035373, Mlig455_051607, Mlig455_054980, Mlig455_057443

Neo: -

Age: -

 0.961 - - - - 0.961 -

Mlig455_003147 {REF} {Length: 967} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_57922} {RNA1310_17737.1} {RNA815_39121}

Mlig455_032425 {REF} {Length: 1839} {NoTransDecoderORF} {RNA1509_57922} {RNA1310_17737.1} {RNA815_2198.1}

Mlig455_034911 {REF} {Length: 964} {NoTransDecoderORF} {RNA1509_57922} {RNA1310_17737.1} {RNA815_39121}

Mlig455_035373 {REF} {Length: 283} {NoTransDecoderORF} {RNA1509_57922} {RNA1310_17062} {RNA815_22796.1}

Mlig455_051607 {REF} {Length: 334} {NoTransDecoderORF} {RNA1509_57922} {RNA1310_17737.3} {RNA815_39121}

Mlig455_054980 {REF} {Length: 345} {NoTransDecoderORF} {RNA1509_57922} {RNA1310_17737.3} {RNA815_39121}

Mlig455_057443 {REF} {Length: 938} {NoTransDecoderORF} {RNA1509_20409} {RNA1310_17737.3} {RNA815_39121}
12. MligTC455_53768 27 0.57 Mlig455_016472

Neo: -

Age: Up-Down-Down

 0.96 - - - - 0.960 - Mlig455_016472 {REF} {Length: 2242} {Pfam: Protein of unknown function (DUF1258) [PF06869.14, score=37.3]; Transposase family tnp2 [PF02992.16, score=18.5]} {RNA1509_54796} {RNA1310_3868} {RNA815_27607}
13. MligTC455_00706 21 0.44 Mlig455_010715

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_010715 {REF} {Length: 752}
14. MligTC455_37300 56 1.16 Mlig455_043712

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_043712 {REF} {Length: 3065} {NoTransDecoderORF} {RNA1509_41553} {RNA1310_46112} {RNA815_38063.1}
15. MligTC455_16428 191 3.99 Mlig455_001908

Neo: -

Age: logFC(26M/2M)=-0.660

Region-enriched R3: 3.721/0.00001

 0.956 - - - - 0.956 - Mlig455_001908 {REF} {Length: 2923} {RNA1509_10724, RNA1509_19015, RNA1509_58076} {RNA1310_14440, RNA1509_10724, RNA1509_58076} {RNA1509_10724, RNA1509_58076, RNA815_13456}
16. MligTC455_37976 287 5.97 Mlig455_057731

Neo: -

Age: -

Region-enriched R2: 2.845/0.00394

 0.956 - - - - 0.956 - Mlig455_057731 {REF} {Length: 459} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_49031} {RNA1310_23076.1} {RNA815_54937}
17. MligTC455_22981 3111 64.8 Mlig455_054246

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_054246 {REF} {Length: 3052} {RNA1509_13841, RNA1509_14538, RNA1509_2253, RNA1509_26575, RNA1509_47864} {RNA1310_8881.1, RNA1509_14538, RNA1509_2253, RNA1509_26575, RNA1509_47864} {RNA1509_14538, RNA1509_2253, RNA1509_26575, RNA1509_47864, RNA815_8834}
18. MligTC455_05994 19 0.39 Mlig455_062719

Neo: -

Age: Up-Down-Up

 0.954 - - - - 0.954 - Mlig455_062719 {REF} {Length: 3592} {Pfam: Transposase protein [PF12017.10, score=90.1]; THAP domain [PF05485.14, score=42.6]} {RNA1509_59289} {RNA1310_65815}
19. MligTC455_32777 48 0.99 Mlig455_028676

Neo: -

Age: -

 0.953 - - - - 0.953 - Mlig455_028676 {REF} {Length: 869} {RNA1509_31677} {RNA1310_82986}
20. MligTC455_39272 13 0.27 Mlig455_024681, Mlig455_044063

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.544

 PKD2L1 0.953 - - - - 0.953 -

Mlig455_024681 {REF} {Length: 2918} {Pfam: Polycystin cation channel [PF08016.14, score=213.0]; Ion transport protein [PF00520.33, score=33.2]} {Human: ENSG00000107593, PKD2L1, polycystin 2 like 1, transient receptor potential cation channel, [Score=128, Expect=5e-30]} {Mouse: ENSMUSG00000034416, Pkd1l2, polycystic kidney disease 1 like 2, [Score=136, Expect=3e-32]; ENSMUSG00000037578, Pkd2l1, polycystic kidney disease 2-like 1, [Score=130, Expect=1e-30]} {Dmel: FBgn0036712, brv2, brivido-2, [Score=58.9, Expect=1e-08]} {Celegans: WBGene00003058, lov-1, Location of vulva defective 1, [Score=111, Expect=9e-25]} {Smed: dd_Smed_v6_12955_0_1, dd_Smed_v6_12955_0_1, [Score=150, Expect=2e-37]} {RNA1509_14205} {RNA1310_796} {RNA815_8353}

Mlig455_044063 {REF} {Length: 13126} {Pfam: Polycystin cation channel [PF08016.14, score=215.1]; REJ domain [PF02010.17, score=149.1]; Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=56.4]; PLAT/LH2 domain [PF01477.25, score=52.3]; Ion transport protein [PF00520.33, score=30.4]} {Human: ENSG00000107593, PKD2L1, polycystin 2 like 1, transient receptor potential cation channel, [Score=132, Expect=5e-30]; ENSG00000166473, PKD1L2, polycystin 1 like 2 (gene/pseudogene), [Score=130, Expect=5e-29]} {Mouse: ENSMUSG00000034416, Pkd1l2, polycystic kidney disease 1 like 2, [Score=144, Expect=2e-33]} {Dmel: FBgn0087011, CG41520, [Score=63.5, Expect=3e-09]} {Celegans: WBGene00003058, lov-1, Location of vulva defective 1, [Score=120, Expect=2e-26]} {Smed: dd_Smed_v6_12955_0_1, dd_Smed_v6_12955_0_1, [Score=154, Expect=9e-38]} {RNA1509_14205} {RNA1310_796} {RNA815_8353}
21. MligTC455_00331 13 0.26 Mlig455_053876

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_053876 {REF} {Length: 30} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_29842} {RNA1310_31370.2} {RNA815_11432}
22. MligTC455_10726 403 8.41 Mlig455_016922, Mlig455_017022, Mlig455_017026

Neo: Irradiation

Age: Up-Down-Up

Region-enriched R7: 3.844/0.00115

 B3GALNT1 0.952 - - - - 0.952 -

Mlig455_016922 {REF} {Length: 2281} {Pfam: Galactosyltransferase [PF01762.23, score=84.8]} {Human: ENSG00000169255, B3GALNT1, beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group), [Score=64.3, Expect=8e-11]} {Mouse: ENSMUSG00000029431, B3gnt4, UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4, [Score=66.2, Expect=1e-11]; ENSMUSG00000043300, B3galnt1, UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1, [Score=63.2, Expect=1e-10]} {Dmel: FBgn0031988, CG8668, [Score=64.3, Expect=6e-11]} {Celegans: WBGene00008291, C54C8.3, Hexosyltransferase, [Score=69.7, Expect=4e-13]} {Smed: dd_Smed_v6_9789_0_1, dd_Smed_v6_9789_0_1, [Score=70.5, Expect=2e-13]} {RNA1509_35635} {RNA1310_21104.3} {RNA815_8860.1}

Mlig455_017022 {REF} {Length: 1895} {Pfam: Galactosyltransferase [PF01762.23, score=84.8]} {Human: ENSG00000169255, B3GALNT1, beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group), [Score=64.3, Expect=8e-11]} {Mouse: ENSMUSG00000029431, B3gnt4, UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4, [Score=66.2, Expect=1e-11]; ENSMUSG00000069920, B3gnt9, UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9, [Score=63.2, Expect=2e-10]} {Dmel: FBgn0031988, CG8668, [Score=64.7, Expect=5e-11]} {Celegans: WBGene00008291, C54C8.3, Hexosyltransferase, [Score=69.7, Expect=4e-13]} {Smed: dd_Smed_v6_9789_0_1, dd_Smed_v6_9789_0_1, [Score=70.5, Expect=2e-13]} {RNA1509_35635} {RNA1310_21104.2} {RNA815_8860.1}

Mlig455_017026 {REF} {Length: 1951} {Pfam: Galactosyltransferase [PF01762.23, score=62.8]} {Dmel: FBgn0053145, GalT1, beta1,3-galactosyltransferase 1, [Score=54.3, Expect=8e-08]} {Smed: dd_Smed_v6_9789_0_1, dd_Smed_v6_9789_0_1, [Score=50.1, Expect=8e-07]} {RNA1509_35635} {RNA1310_21104.2} {RNA815_8860.1}
23. MligTC455_08237 7 0.15 Mlig455_032716

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_032716 {REF} {Length: 497} {NoTransDecoderORF} {RNA1310_85843}
24. MligTC455_08626 34 0.7 Mlig455_016338

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_016338 {REF} {Length: 1057} {NoTransDecoderORF}
25. MligTC455_12502 27 0.56 Mlig455_023559, Mlig455_058927

Neo: -

Age: -

 0.95 - - - - 0.950 -

Mlig455_023559 {REF} {Length: 239} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_32550} {RNA1310_57270} {RNA815_14295}

Mlig455_058927 {REF} {Length: 234} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_38113} {RNA1310_57270} {RNA815_14295}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA