M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_38414

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_38414 564 11.74 Mlig455_026498

Neo: -

Age: -

 DRAP1 Mlig455_026498 {REF} {Length: 2292} {Pfam: Histone-like transcription factor (CBF/NF-Y) and archaeal histone [PF00808.25, score=50.4]} {Human: ENSG00000175550, DRAP1, DR1 associated protein 1, [RH, Score=109, Expect=1e-28]} {Mouse: ENSMUSG00000024914, Drap1, Dr1 associated protein 1 (negative cofactor 2 alpha), [RH, Score=109, Expect=1e-28]} {Dmel: FBgn0034650, NC2alpha, Negative Cofactor 2alpha, [RH, Score=108, Expect=3e-27]} {Smed: dd_Smed_v6_4023_0_1, dd_Smed_v6_4023_0_1, [RH, Score=107, Expect=2e-28]} {RNA1509_32984, RNA1509_34517, RNA1509_37990, RNA1509_56115} {RNA1310_20106.1, RNA1509_32984, RNA1509_34517, RNA1509_37990, RNA1509_56115} {RNA1509_32984, RNA1509_34517, RNA1509_37990, RNA1509_56115, RNA815_9617.1}

Cumulative graph for MligTC455_38414

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.02 3.927 0.45263 1.00000
RegionR2 -0.095 3.927 0.83375 1.00000
RegionR3 0.174 3.927 0.62206 1.00000
RegionR4 0.698 3.927 0.10816 0.32396
RegionR5 0.79 3.927 0.00953 0.05565
RegionR6 -0.074 3.927 0.84835 1.00000
RegionR7 -0.268 3.927 0.59892 1.00000
RegionR8 -0.205 3.927 0.72847 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.393 3.927 0.84709 1.00000
RegenerationR2 -0.357 3.927 0.29943 0.74118
RegenerationR3 -0.584 3.927 0.12615 0.54720
RegenerationR4 -0.215 3.927 0.58180 0.90590
RegenerationR5 -0.171 3.927 0.60114 0.91031
RegenerationR6 0.201 3.927 0.61517 0.87757
RegenerationBL -0.194 3.927 0.72664 1.00000
RegenerationTP 0.478 3.927 0.35204 0.79358


Genes with expression patterns similar to MligTC455_38414

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_38414 564 11.74 Mlig455_026498

Neo: -

Age: -

 DRAP1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_026498 {REF} {Length: 2292} {Pfam: Histone-like transcription factor (CBF/NF-Y) and archaeal histone [PF00808.25, score=50.4]} {Human: ENSG00000175550, DRAP1, DR1 associated protein 1, [RH, Score=109, Expect=1e-28]} {Mouse: ENSMUSG00000024914, Drap1, Dr1 associated protein 1 (negative cofactor 2 alpha), [RH, Score=109, Expect=1e-28]} {Dmel: FBgn0034650, NC2alpha, Negative Cofactor 2alpha, [RH, Score=108, Expect=3e-27]} {Smed: dd_Smed_v6_4023_0_1, dd_Smed_v6_4023_0_1, [RH, Score=107, Expect=2e-28]} {RNA1509_32984, RNA1509_34517, RNA1509_37990, RNA1509_56115} {RNA1310_20106.1, RNA1509_32984, RNA1509_34517, RNA1509_37990, RNA1509_56115} {RNA1509_32984, RNA1509_34517, RNA1509_37990, RNA1509_56115, RNA815_9617.1}
2. MligTC455_32608 378 7.88 Mlig455_047029

Neo: -

Age: -

 CSTF3 2.482 0.753 - - 0.777 - 0.952 Mlig455_047029 {REF} {Length: 3606} {TRANSSPLICED} {Pfam: Suppressor of forked protein (Suf) [PF05843.16, score=264.1]} {Human: ENSG00000176102, CSTF3, cleavage stimulation factor subunit 3, [RH, Score=817, Expect=0.0]} {Mouse: ENSMUSG00000027176, Cstf3, cleavage stimulation factor, 3' pre-RNA, subunit 3, [RH, Score=817, Expect=0.0]} {Dmel: FBgn0003559, su(f), suppressor of forked, [RH, Score=741, Expect=0.0]} {Celegans: WBGene00006307, suf-1, SUppressor-of-Forked (Drosophila) homolog, [RH, Score=634, Expect=0.0]} {Smed: dd_Smed_v6_2751_0_1, dd_Smed_v6_2751_0_1, [RH, Score=852, Expect=0.0]} {RNA1509_46620, RNA1509_51439, RNA1509_6273} {RNA1310_9060, RNA1509_46620, RNA1509_51439} {RNA1509_46620, RNA1509_51439, RNA815_6112}
3. MligTC455_34490 690 14.36 Mlig455_047518

Neo: -

Age: Down-Up-Up

 SEC22B 1.734 - - 0.955 - - 0.779 Mlig455_047518 {REF} {Length: 2820} {Pfam: Regulated-SNARE-like domain [PF13774.8, score=83.4]; Synaptobrevin [PF00957.23, score=52.5]} {Human: ENSG00000265808, SEC22B, SEC22 homolog B, vesicle trafficking protein (gene/pseudogene), [RH, Score=275, Expect=9e-90]} {Mouse: ENSMUSG00000027879, Sec22b, SEC22 homolog B, vesicle trafficking protein, [RH, Score=275, Expect=6e-90]} {Dmel: FBgn0260855, Sec22, Secretory 22, [RH, Score=236, Expect=6e-75]} {Celegans: WBGene00018853, sec-22, Yeast SEC homolog, [RH, Score=192, Expect=2e-58]} {Smed: dd_Smed_v6_8369_0_1, dd_Smed_v6_8369_0_1, [RH, Score=294, Expect=9e-98]} {RNA1509_31711, RNA1509_3231} {RNA1310_11259, RNA1509_31711} {RNA1509_31711, RNA815_14769}
4. MligTC455_44941 1184 24.66 Mlig455_004016, Mlig455_004046

Neo: -

Age: -

 PIGA 0.987 - - - - - 0.987

Mlig455_004016 {REF} {Length: 2021} {TRANSSPLICED} {Pfam: PIGA (GPI anchor biosynthesis) [PF08288.14, score=136.1]; Glycosyltransferase Family 4 [PF13439.8, score=107.1]; Glycosyl transferases group 1 [PF00534.22, score=89.4]; Glycosyl transferases group 1 [PF13692.8, score=83.9]; Glycosyl transferase 4-like domain [PF13579.8, score=56.2]} {Human: ENSG00000165195, PIGA, phosphatidylinositol glycan anchor biosynthesis class A, [RH, Score=470, Expect=1e-163]} {Mouse: ENSMUSG00000031381, Piga, phosphatidylinositol glycan anchor biosynthesis, class A, [RH, Score=475, Expect=1e-165]} {Dmel: FBgn0034270, PIG-A, Phosphatidylinositol glycan anchor biosynthesis class A, [RH, Score=383, Expect=1e-129]} {Celegans: WBGene00008431, piga-1, PhosphatidylInositol-Glycan biosynthesis class A protein, [RH, Score=401, Expect=2e-137]} {Smed: dd_Smed_v6_5918_0_1, dd_Smed_v6_5918_0_1, [RH, Score=430, Expect=1e-148]} {RNA1509_59793} {RNA1310_21220.1} {RNA815_5464}

Mlig455_004046 {REF} {Length: 2138} {TRANSSPLICED} {Pfam: PIGA (GPI anchor biosynthesis) [PF08288.14, score=136.2]; Glycosyltransferase Family 4 [PF13439.8, score=107.1]; Glycosyl transferases group 1 [PF00534.22, score=89.4]; Glycosyl transferases group 1 [PF13692.8, score=83.9]; Glycosyl transferase 4-like domain [PF13579.8, score=56.3]} {Human: ENSG00000165195, PIGA, phosphatidylinositol glycan anchor biosynthesis class A, [RH, Score=470, Expect=1e-163]} {Mouse: ENSMUSG00000031381, Piga, phosphatidylinositol glycan anchor biosynthesis, class A, [RH, Score=475, Expect=1e-165]} {Dmel: FBgn0034270, PIG-A, Phosphatidylinositol glycan anchor biosynthesis class A, [RH, Score=387, Expect=4e-131]} {Celegans: WBGene00008431, piga-1, PhosphatidylInositol-Glycan biosynthesis class A protein, [RH, Score=402, Expect=1e-137]} {Smed: dd_Smed_v6_5918_0_1, dd_Smed_v6_5918_0_1, [RH, Score=431, Expect=6e-149]} {RNA1509_59793} {RNA1310_21220.1} {RNA815_5464}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA