M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_38646

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_38646 1084 22.58 Mlig455_039528

Neo: -

Age: logFC(26M/2M)=-0.732

Region-enriched R2: 1.500/0.00630

 Mlig455_039528 {REF} {Length: 3473} {RNA1509_2582} {RNA1310_1485.1} {RNA815_391}

Cumulative graph for MligTC455_38646

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.107 4.62 0.90173 1.00000
RegionR2 1.5 4.62 0.00018 0.00630
RegionR3 0.247 4.62 0.50378 0.99589
RegionR4 -0.066 4.62 0.88417 1.00000
RegionR5 -0.41 4.62 0.28145 0.61005
RegionR6 -0.633 4.62 0.13987 0.67229
RegionR7 -0.002 4.62 0.99877 1.00000
RegionR8 -0.745 4.62 0.31428 0.94686

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.512 4.62 0.59269 1.00000
RegenerationR2 -0.966 4.62 0.00967 0.15748
RegenerationR3 0.402 4.62 0.32763 0.75409
RegenerationR4 0.272 4.62 0.52704 0.88295
RegenerationR5 0.658 4.62 0.11668 0.51365
RegenerationR6 0.888 4.62 0.05187 0.28538
RegenerationBL -0.127 4.62 0.81635 1.00000
RegenerationTP 0.685 4.62 0.21297 0.65607


Genes with expression patterns similar to MligTC455_38646

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_38646 1084 22.58 Mlig455_039528

Neo: -

Age: logFC(26M/2M)=-0.732

Region-enriched R2: 1.500/0.00630

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_039528 {REF} {Length: 3473} {RNA1509_2582} {RNA1310_1485.1} {RNA815_391}
2. MligTC455_48790 413 8.61 Mlig455_011702

Neo: -

Age: logFC(26M/2M)=-0.552

Region-enriched R2: 1.934/0.02894

 2.743 - 0.866 - 0.921 0.956 - Mlig455_011702 {REF} {Length: 1287} {RNA1509_23745, RNA1509_59166} {RNA1310_26794.1, RNA1509_23745, RNA1509_59166} {RNA1509_23745, RNA1509_59166, RNA815_13204}
3. MligTC455_43499 358 7.45 Mlig455_000986

Neo: -

Age: Down-Up-Up

 1.777 - 0.826 - 0.951 - - Mlig455_000986 {REF} {Length: 1412} {Pfam: Cell-cycle alteration and expression-elevated protein in tumour [PF16566.7, score=18.8]} {RNA1509_30182} {RNA1310_25153} {RNA815_11770}
4. MligTC455_18558 365 7.6 Mlig455_046290, Mlig455_061531

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.651

Region-enriched R2: 3.938/0.00087

 1.686 - 0.715 - 0.971 - -

Mlig455_046290 {REF} {Length: 3132} {RNA1310_38914} {RNA815_39564}

Mlig455_061531 {REF} {Length: 2479} {RNA1310_38914} {RNA815_39564}
5. MligTC455_32562 12425 258.85 Mlig455_021673

Neo: -

Age: Down-Down-Up

Region-enriched R2: 6.211/0.00000
Region-enriched R3: 5.085/0.00000

Regeneration-downregulated R2: -6.045

Regeneration-depleted R2: -6.045

 0.971 - - - - 0.971 - Mlig455_021673 {REF} {Length: 1153} {RNA1509_570} {RNA1310_40828} {RNA815_5866.1}
6. MligTC455_32564 12423 258.82 Mlig455_021848

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.949

Region-enriched R2: 6.223/0.00000
Region-enriched R3: 5.091/0.00000

Regeneration-downregulated R2: -6.039

Regeneration-depleted R2: -6.039

 0.971 - - - - 0.971 - Mlig455_021848 {REF} {Length: 947} {RNA1509_570} {RNA1310_40828} {RNA815_5866.1}
7. MligTC455_32567 24752 515.66 Mlig455_058840, Mlig455_062216

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=3.042

Region-enriched R2: 6.054/0.00000
Region-enriched R3: 5.075/0.00000

Regeneration-downregulated R2: -6.098

Regeneration-depleted R2: -6.098

 0.971 - - - - 0.971 -

Mlig455_058840 {REF} {Length: 884} {RNA1509_570} {RNA1310_40828} {RNA815_5866.1}

Mlig455_062216 {REF} {Length: 1042} {RNA1509_54385, RNA1509_570, RNA1509_7711} {RNA1310_40828, RNA1509_54385, RNA1509_7711} {RNA1509_54385, RNA1509_7711, RNA815_5866.1}
8. MligTC455_18847 5039 104.98 Mlig455_017924

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.933

Region-specific R3: 4.309

Region-enriched R3: 3.414/0.00000
Region-enriched R2: 2.570/0.00069

 0.968 - - - - 0.968 - Mlig455_017924 {REF} {Length: 1071} {RNA1509_16771, RNA1509_3550} {RNA1310_54908.2, RNA1509_16771, RNA1509_3550} {RNA1509_16771, RNA1509_3550, RNA815_21198.1}
9. MligTC455_27135 6448 134.32 Mlig455_010165

Neo: -

Age: logFC(26M/2M)=-1.751

Region-enriched R3: 5.523/0.00000
Region-enriched R2: 5.495/0.00004

 0.967 - - - - 0.967 - Mlig455_010165 {REF} {Length: 547} {RNA1509_2000} {RNA1310_57659} {RNA815_27379}
10. MligTC455_27136 12962 270.04 Mlig455_010130, Mlig455_010231

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-1.817

Region-enriched R3: 5.515/0.00000
Region-enriched R2: 5.440/0.00002

 0.967 - - - - 0.967 -

Mlig455_010130 {REF} {Length: 753} {RNA1509_906} {RNA1310_57659} {RNA815_27379}

Mlig455_010231 {REF} {Length: 423} {RNA1509_13891, RNA1509_906} {RNA1310_57659, RNA1509_13891} {RNA1509_13891, RNA815_27379}
11. MligTC455_27684 8324 173.41 Mlig455_067482, Mlig455_067490

Neo: -

Age: Down-Up-Up

Region-specific R2: 3.632

Region-enriched R2: 2.544/0.00000
Region-enriched R3: 1.302/0.04212

 0.965 - - - - 0.965 -

Mlig455_067482 {REF} {Length: 709} {RNA1509_3821} {RNA1310_17576.1} {RNA815_6182.1}

Mlig455_067490 {REF} {Length: 963} {RNA1509_20366, RNA1509_3821} {RNA1310_17576.1, RNA1509_20366, RNA1509_3821} {RNA1509_20366, RNA1509_3821, RNA815_6182.1}
12. MligTC455_27143 5346 111.38 Mlig455_010167

Neo: -

Age: Down-Down-Down

Region-enriched R3: 6.246/0.00000
Region-enriched R2: 5.974/0.00003

 0.964 - - - - 0.964 - Mlig455_010167 {REF} {Length: 734} {Pfam: Domain of unknown function (DUF4576) [PF15144.8, score=26.9]; Glycine rich protein family [PF07172.13, score=19.2]; Protein of unknown function (DUF2615) [PF11027.10, score=18.9]} {RNA1509_3211} {RNA1310_56673} {RNA815_23606.2}
13. MligTC455_26979 7955 165.73 Mlig455_010144

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-2.259

Region-enriched R2: 5.244/0.00009
Region-enriched R3: 5.229/0.00000

 0.963 - - - - 0.963 - Mlig455_010144 {REF} {Length: 856} {RNA1509_22365, RNA1509_23116, RNA1509_7551} {RNA1310_62616, RNA1509_22365, RNA1509_7551} {RNA1509_22365, RNA1509_7551, RNA815_23023.3}
14. MligTC455_27142 5464 113.84 Mlig455_010132

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-1.296

Region-enriched R3: 6.613/0.00000
Region-enriched R2: 6.470/0.00001

 0.963 - - - - 0.963 - Mlig455_010132 {REF} {Length: 587} {RNA1509_3211} {RNA1310_56673, RNA1509_3211} {RNA1509_3211, RNA815_23606.2}
15. MligTC455_29512 96 2 Mlig455_012232, Mlig455_039821

Neo: -

Age: -

 0.96 - - - 0.960 - -

Mlig455_012232 {REF} {Length: 3677} {RNA1509_3858} {RNA1310_928.1, RNA1509_3858} {RNA1509_3858, RNA815_529.1}

Mlig455_039821 {REF} {Length: 4228} {RNA1509_3858} {RNA1310_928.1} {RNA815_529.1}
16. MligTC455_24010 2634 54.87 Mlig455_051353

Neo: -

Age: -

Regeneration-downregulated BL: -1.539

Regeneration-depleted BL: -1.539

 0.958 - - - - 0.958 - Mlig455_051353 {REF} {Length: 2148} {TRANSSPLICED} {Pfam: Cystatin domain [PF00031.23, score=31.0]} {RNA1509_43457, RNA1509_44153} {RNA1310_36472, RNA1509_44153} {RNA1509_44153, RNA815_10916}
17. MligTC455_27153 7470 155.63 Mlig455_010233

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-1.758

Region-enriched R3: 5.499/0.00000
Region-enriched R2: 5.080/0.00005

 0.957 - - - - 0.957 - Mlig455_010233 {REF} {Length: 2801} {RNA1509_20914, RNA1509_21187, RNA1509_3137, RNA1509_37402, RNA1509_37487, RNA1509_40054, RNA1509_445, RNA1509_50593} {RNA1310_45578.1, RNA1509_20914, RNA1509_21187, RNA1509_3137, RNA1509_37402, RNA1509_37487, RNA1509_40054, RNA1509_445, RNA1509_50593} {RNA1509_20914, RNA1509_21187, RNA1509_3137, RNA1509_37402, RNA1509_37487, RNA1509_40054, RNA1509_445, RNA1509_50593, RNA815_7257.5}
18. MligTC455_27148 6221 129.59 Mlig455_010235

Neo: -

Age: logFC(26M/2M)=-2.081

Region-enriched R3: 7.088/0.00000
Region-enriched R2: 7.010/0.00001

 0.955 - - - - 0.955 - Mlig455_010235 {REF} {Length: 111} {NoTransDecoderORF} {RNA1509_1301, RNA1509_33935} {RNA1310_108580, RNA1509_33935} {RNA1509_33935, RNA815_7257.1}
19. MligTC455_36022 6626 138.05 Mlig455_069515

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.454

Region-enriched R3: 5.488/0.00000
Region-enriched R2: 4.813/0.00000

 0.953 - - - - 0.953 - Mlig455_069515 {REF} {Length: 792} {Smed: dd_Smed_v6_10163_0_1, dd_Smed_v6_10163_0_1, [Score=48.5, Expect=4e-07]} {RNA1509_3664} {RNA1310_90094, RNA1509_3664} {RNA1509_3664, RNA815_23687}
20. MligTC455_36021 6487 135.15 Mlig455_069510

Neo: -

Age: Down-Down-Up

Region-enriched R3: 6.241/0.00000
Region-enriched R2: 5.640/0.00000

 0.952 - - - - 0.952 - Mlig455_069510 {REF} {Length: 894} {Smed: dd_Smed_v6_10163_0_1, dd_Smed_v6_10163_0_1, [Score=49.7, Expect=3e-07]} {RNA1509_748} {RNA1310_90094} {RNA815_23687}
21. MligTC455_50806 257 5.36 Mlig455_028471

Neo: -

Age: Up-Down-Up

Region-specific R2: 3.748

Region-enriched R2: 3.524/0.00051

Regeneration-downregulated R2: -2.091

Regeneration-depleted R2: -2.091

 0.951 - - - 0.951 - - Mlig455_028471 {REF} {Length: 923} {Pfam: Pancreatic hormone peptide [PF00159.20, score=41.0]} {RNA1509_25155} {RNA1310_44043} {RNA815_21709}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA