TomoSeq data search

Data search

Results for MligTC455_38721

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_38721	462	9.61	Mlig455_065565	Neo: - Age: -	COL4A6	Mlig455_065565 {REF} {Length: 6183} {Pfam: Collagen triple helix repeat (20 copies) [PF01391.20, score=617.9]; C-terminal tandem repeated domain in type 4 procollagen [PF01413.21, score=202.1]} {Human: ENSG00000197565, COL4A6, collagen type IV alpha 6 chain, [Score=507, Expect=9e-151]} {Mouse: ENSMUSG00000116510, Col4a6, collagen, type IV, alpha 6, [Score=514, Expect=4e-153]; ENSMUSG00000031273, Col4a6, collagen, type IV, alpha 6, [Score=514, Expect=4e-153]} {Dmel: FBgn0000299, Col4a1, Collagen type IV alpha 1, [Score=619, Expect=0.0]} {Celegans: WBGene00001263, emb-9, Collagen alpha-1(IV) chain, [Score=580, Expect=2e-176]} {Smed: dd_Smed_v6_2337_0_1, dd_Smed_v6_2337_0_1, [Score=735, Expect=0.0]} {RNA1509_5346} {RNA1310_692.1} {RNA815_573}

Cluster

Total UMI counts

Global CPM

Transcripts

Cumulative graph for MligTC455_38721

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-1.482	3.651	0.43066	1.00000
RegionR2	0.569	3.651	0.41733	0.80948
RegionR3	0.386	3.651	0.50375	0.99589
RegionR4	-0.59	3.651	0.43516	0.76410
RegionR5	-0.994	3.651	0.11944	0.34536
RegionR6	0.383	3.651	0.50185	1.00000
RegionR7	0.893	3.651	0.17159	0.76097
RegionR8	0.835	3.651	0.31116	0.94377

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	1.934	3.651	0.38097	1.00000
RegenerationR2	0.392	3.651	0.51309	0.87717
RegenerationR3	-0.004	3.651	0.99528	1.00000
RegenerationR4	0.177	3.651	0.80636	0.98837
RegenerationR5	0.231	3.651	0.72979	0.96367
RegenerationR6	0.768	3.651	0.23815	0.58556
RegenerationBL	-0.223	3.651	0.75634	1.00000
RegenerationTP	-0.996	3.651	0.20724	0.64909

Genes with expression patterns similar to MligTC455_38721

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_38721	462	9.61	Mlig455_065565	Neo: - Age: -	COL4A6	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_065565 {REF} {Length: 6183} {Pfam: Collagen triple helix repeat (20 copies) [PF01391.20, score=617.9]; C-terminal tandem repeated domain in type 4 procollagen [PF01413.21, score=202.1]} {Human: ENSG00000197565, COL4A6, collagen type IV alpha 6 chain, [Score=507, Expect=9e-151]} {Mouse: ENSMUSG00000116510, Col4a6, collagen, type IV, alpha 6, [Score=514, Expect=4e-153]; ENSMUSG00000031273, Col4a6, collagen, type IV, alpha 6, [Score=514, Expect=4e-153]} {Dmel: FBgn0000299, Col4a1, Collagen type IV alpha 1, [Score=619, Expect=0.0]} {Celegans: WBGene00001263, emb-9, Collagen alpha-1(IV) chain, [Score=580, Expect=2e-176]} {Smed: dd_Smed_v6_2337_0_1, dd_Smed_v6_2337_0_1, [Score=735, Expect=0.0]} {RNA1509_5346} {RNA1310_692.1} {RNA815_573}
2.	MligTC455_25444	369	7.69	Mlig455_021267, Mlig455_021537	Neo: - Age: Up-Down-Down Region-enriched R2: 2.487/0.04219	CACNA1C, CACNA1D	1.7	0.950	-	0.750	-	-	-	Mlig455_021267 {REF} {Length: 9013} {Pfam: Ion transport protein [PF00520.33, score=537.4]; Voltage gated calcium channel IQ domain [PF08763.13, score=101.3]; Voltage-dependent L-type calcium channel, IQ-associated [PF16905.7, score=91.1]} {Human: ENSG00000151067, CACNA1C, calcium voltage-gated channel subunit alpha1 C, [Score=1303, Expect=0.0]; ENSG00000285479, CACNA1C, calcium voltage-gated channel subunit alpha1 C, [Score=1303, Expect=0.0]; ENSG00000157388, CACNA1D, calcium voltage-gated channel subunit alpha1 D, [Score=1277, Expect=0.0]; ENSG00000081248, CACNA1S, calcium voltage-gated channel subunit alpha1 S, [Score=1266, Expect=0.0]} {Mouse: ENSMUSG00000051331, Cacna1c, calcium channel, voltage-dependent, L type, alpha 1C subunit, [Score=1294, Expect=0.0]; ENSMUSG00000015968, Cacna1d, calcium channel, voltage-dependent, L type, alpha 1D subunit, [Score=1281, Expect=0.0]; ENSMUSG00000026407, Cacna1s, calcium channel, voltage-dependent, L type, alpha 1S subunit, [Score=1260, Expect=0.0]} {Dmel: FBgn0001991, Ca-alpha1D, Ca[2+]-channel protein alpha[[1]] subunit D, [Score=1395, Expect=0.0]} {Celegans: WBGene00001187, egl-19, Voltage-dependent L-type calcium channel subunit alpha, [Score=1340, Expect=0.0]} {Smed: dd_Smed_v6_8899_0_27, dd_Smed_v6_8899_0_27, [Score=1474, Expect=0.0]} {RNA1509_26048} {RNA1310_986.1} {RNA815_1126.1} Mlig455_021537 {REF} {Length: 9107} {Pfam: Ion transport protein [PF00520.33, score=816.0]; Voltage gated calcium channel IQ domain [PF08763.13, score=101.0]; Voltage-dependent L-type calcium channel, IQ-associated [PF16905.7, score=90.6]; Polycystin cation channel [PF08016.14, score=24.2]} {Human: ENSG00000157388, CACNA1D, calcium voltage-gated channel subunit alpha1 D, [RH, Score=1710, Expect=0.0]; ENSG00000081248, CACNA1S, calcium voltage-gated channel subunit alpha1 S, [RH, Score=1708, Expect=0.0]} {Mouse: ENSMUSG00000051331, Cacna1c, calcium channel, voltage-dependent, L type, alpha 1C subunit, [RH, Score=1734, Expect=0.0]; ENSMUSG00000015968, Cacna1d, calcium channel, voltage-dependent, L type, alpha 1D subunit, [RH, Score=1726, Expect=0.0]; ENSMUSG00000026407, Cacna1s, calcium channel, voltage-dependent, L type, alpha 1S subunit, [RH, Score=1701, Expect=0.0]} {Dmel: FBgn0001991, Ca-alpha1D, Ca[2+]-channel protein alpha[[1]] subunit D, [Score=1863, Expect=0.0]} {Celegans: WBGene00001187, egl-19, Voltage-dependent L-type calcium channel subunit alpha, [RH, Score=1798, Expect=0.0]} {Smed: dd_Smed_v6_8899_0_23, dd_Smed_v6_8899_0_23, [RH, Score=1973, Expect=0.0]} {RNA1509_41912} {RNA1310_869} {RNA815_1126.1}
3.	MligTC455_25059	318	6.63	Mlig455_011858	Neo: - Age: logFC(26M/2M)=-0.243 Regeneration-downregulated BL: -7.201 Regeneration-depleted BL: -7.201	RASEF	0.964	-	-	0.964	-	-	-	Mlig455_011858 {REF} {Length: 4102} {Pfam: Ras family [PF00071.24, score=167.3]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=104.0]; ADP-ribosylation factor family [PF00025.23, score=55.2]; EF-hand domain pair [PF13499.8, score=42.0]; EF hand [PF00036.34, score=41.4]; EF-hand domain [PF13405.8, score=39.3]; 50S ribosome-binding GTPase [PF01926.25, score=35.1]; EF-hand domain pair [PF13833.8, score=33.0]; EF hand [PF13202.8, score=28.9]; Elongation factor Tu GTP binding domain [PF00009.29, score=25.9]; Gtr1/RagA G protein conserved region [PF04670.14, score=21.8]; Signal recognition particle receptor beta subunit [PF09439.12, score=21.8]} {Human: ENSG00000165105, RASEF, RAS and EF-hand domain containing, [RH, Score=221, Expect=9e-61]} {Mouse: ENSMUSG00000043003, Rasef, RAS and EF hand domain containing, [RH, Score=222, Expect=9e-63]} {Dmel: FBgn0285937, Rab1, [Score=145, Expect=2e-39]} {Celegans: WBGene00016344, rsef-1, Ras and EF-hand domain-containing protein homolog, [RH, Score=188, Expect=3e-50]} {Smed: dd_Smed_v6_4284_0_1, dd_Smed_v6_4284_0_1, [RH, Score=225, Expect=2e-62]} {RNA1509_21698} {RNA1310_2939.1, RNA1509_21698} {RNA1509_21698, RNA815_9067}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Σ Spearman correlations

Int1

Int2

Int3

Reg1

Reg2

Reg3

Annotation

MligTC455_38721

462

9.61

Mlig455_065565

Neo: -

Age: -

COL4A6

1.000

MligTC455_25444

369

7.69

Mlig455_021267, Mlig455_021537

Neo: -

Age: Up-Down-Down

Region-enriched R2: 2.487/0.04219

CACNA1C, CACNA1D

1.7

0.950

0.750

Mlig455_021267 {REF} {Length: 9013} {Pfam: Ion transport protein [PF00520.33, score=537.4]; Voltage gated calcium channel IQ domain [PF08763.13, score=101.3]; Voltage-dependent L-type calcium channel, IQ-associated [PF16905.7, score=91.1]} {Human: ENSG00000151067, CACNA1C, calcium voltage-gated channel subunit alpha1 C, [Score=1303, Expect=0.0]; ENSG00000285479, CACNA1C, calcium voltage-gated channel subunit alpha1 C, [Score=1303, Expect=0.0]; ENSG00000157388, CACNA1D, calcium voltage-gated channel subunit alpha1 D, [Score=1277, Expect=0.0]; ENSG00000081248, CACNA1S, calcium voltage-gated channel subunit alpha1 S, [Score=1266, Expect=0.0]} {Mouse: ENSMUSG00000051331, Cacna1c, calcium channel, voltage-dependent, L type, alpha 1C subunit, [Score=1294, Expect=0.0]; ENSMUSG00000015968, Cacna1d, calcium channel, voltage-dependent, L type, alpha 1D subunit, [Score=1281, Expect=0.0]; ENSMUSG00000026407, Cacna1s, calcium channel, voltage-dependent, L type, alpha 1S subunit, [Score=1260, Expect=0.0]} {Dmel: FBgn0001991, Ca-alpha1D, Ca[2+]-channel protein alpha[[1]] subunit D, [Score=1395, Expect=0.0]} {Celegans: WBGene00001187, egl-19, Voltage-dependent L-type calcium channel subunit alpha, [Score=1340, Expect=0.0]} {Smed: dd_Smed_v6_8899_0_27, dd_Smed_v6_8899_0_27, [Score=1474, Expect=0.0]} {RNA1509_26048} {RNA1310_986.1} {RNA815_1126.1}

Mlig455_021537 {REF} {Length: 9107} {Pfam: Ion transport protein [PF00520.33, score=816.0]; Voltage gated calcium channel IQ domain [PF08763.13, score=101.0]; Voltage-dependent L-type calcium channel, IQ-associated [PF16905.7, score=90.6]; Polycystin cation channel [PF08016.14, score=24.2]} {Human: ENSG00000157388, CACNA1D, calcium voltage-gated channel subunit alpha1 D, [RH, Score=1710, Expect=0.0]; ENSG00000081248, CACNA1S, calcium voltage-gated channel subunit alpha1 S, [RH, Score=1708, Expect=0.0]} {Mouse: ENSMUSG00000051331, Cacna1c, calcium channel, voltage-dependent, L type, alpha 1C subunit, [RH, Score=1734, Expect=0.0]; ENSMUSG00000015968, Cacna1d, calcium channel, voltage-dependent, L type, alpha 1D subunit, [RH, Score=1726, Expect=0.0]; ENSMUSG00000026407, Cacna1s, calcium channel, voltage-dependent, L type, alpha 1S subunit, [RH, Score=1701, Expect=0.0]} {Dmel: FBgn0001991, Ca-alpha1D, Ca[2+]-channel protein alpha[[1]] subunit D, [Score=1863, Expect=0.0]} {Celegans: WBGene00001187, egl-19, Voltage-dependent L-type calcium channel subunit alpha, [RH, Score=1798, Expect=0.0]} {Smed: dd_Smed_v6_8899_0_23, dd_Smed_v6_8899_0_23, [RH, Score=1973, Expect=0.0]} {RNA1509_41912} {RNA1310_869} {RNA815_1126.1}

MligTC455_25059

318

6.63

Mlig455_011858

Neo: -

Age: logFC(26M/2M)=-0.243

Regeneration-downregulated BL: -7.201

Regeneration-depleted BL: -7.201

RASEF

0.964

Mlig455_011858 {REF} {Length: 4102} {Pfam: Ras family [PF00071.24, score=167.3]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=104.0]; ADP-ribosylation factor family [PF00025.23, score=55.2]; EF-hand domain pair [PF13499.8, score=42.0]; EF hand [PF00036.34, score=41.4]; EF-hand domain [PF13405.8, score=39.3]; 50S ribosome-binding GTPase [PF01926.25, score=35.1]; EF-hand domain pair [PF13833.8, score=33.0]; EF hand [PF13202.8, score=28.9]; Elongation factor Tu GTP binding domain [PF00009.29, score=25.9]; Gtr1/RagA G protein conserved region [PF04670.14, score=21.8]; Signal recognition particle receptor beta subunit [PF09439.12, score=21.8]} {Human: ENSG00000165105, RASEF, RAS and EF-hand domain containing, [RH, Score=221, Expect=9e-61]} {Mouse: ENSMUSG00000043003, Rasef, RAS and EF hand domain containing, [RH, Score=222, Expect=9e-63]} {Dmel: FBgn0285937, Rab1, [Score=145, Expect=2e-39]} {Celegans: WBGene00016344, rsef-1, Ras and EF-hand domain-containing protein homolog, [RH, Score=188, Expect=3e-50]} {Smed: dd_Smed_v6_4284_0_1, dd_Smed_v6_4284_0_1, [RH, Score=225, Expect=2e-62]} {RNA1509_21698} {RNA1310_2939.1, RNA1509_21698} {RNA1509_21698, RNA815_9067}