M. lignano Tomo-Seq
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Results for MligTC455_38736

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_38736 735 15.32 Mlig455_004330

Neo: Int S/G2/M

Age: -

Regeneration-upregulated BL: 1.701

Regeneration-enriched BL: 1.701

 BCKDHB Mlig455_004330 {REF} {Length: 2060} {TRANSSPLICED} {Pfam: Transketolase, pyrimidine binding domain [PF02779.26, score=143.6]; Transketolase, C-terminal domain [PF02780.22, score=119.1]} {Human: ENSG00000083123, BCKDHB, branched chain keto acid dehydrogenase E1 subunit beta, [RH, Score=523, Expect=0.0]} {Mouse: ENSMUSG00000032263, Bckdhb, branched chain ketoacid dehydrogenase E1, beta polypeptide, [RH, Score=525, Expect=0.0]} {Dmel: FBgn0039993, CG17691, [RH, Score=469, Expect=3e-166]} {Celegans: WBGene00006518, bckd-1B, Branched Chain Keto acid Dehydrogenase e1 (E1) subunit, [RH, Score=422, Expect=7e-148]} {Smed: dd_Smed_v6_2949_0_1, dd_Smed_v6_2949_0_1, [RH, Score=455, Expect=2e-161]} {RNA1509_14939} {RNA1310_21545, RNA1509_14939} {RNA1509_14939, RNA815_5129.1}

Cumulative graph for MligTC455_38736

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.096 4.27 0.92819 1.00000
RegionR2 0.3 4.27 0.46658 0.85271
RegionR3 0.176 4.27 0.58179 1.00000
RegionR4 0.775 4.27 0.03982 0.16499
RegionR5 0.544 4.27 0.04883 0.18438
RegionR6 -0.027 4.27 0.93749 1.00000
RegionR7 -0.561 4.27 0.28364 0.91680
RegionR8 -1.302 4.27 0.07493 0.52220

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.503 4.27 0.76971 1.00000
RegenerationR2 0.156 4.27 0.61234 0.92022
RegenerationR3 0.271 4.27 0.42818 0.81996
RegenerationR4 0.115 4.27 0.73522 0.96607
RegenerationR5 0.364 4.27 0.20405 0.63693
RegenerationR6 0.969 4.27 0.00524 0.08722
RegenerationBL 1.701 4.27 0.00029 0.00969 Specific for BL: 1.701
RegenerationTP 1.084 4.27 0.06526 0.41179


Genes with expression patterns similar to MligTC455_38736

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_38736 735 15.32 Mlig455_004330

Neo: Int S/G2/M

Age: -

Regeneration-upregulated BL: 1.701

Regeneration-enriched BL: 1.701

 BCKDHB 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_004330 {REF} {Length: 2060} {TRANSSPLICED} {Pfam: Transketolase, pyrimidine binding domain [PF02779.26, score=143.6]; Transketolase, C-terminal domain [PF02780.22, score=119.1]} {Human: ENSG00000083123, BCKDHB, branched chain keto acid dehydrogenase E1 subunit beta, [RH, Score=523, Expect=0.0]} {Mouse: ENSMUSG00000032263, Bckdhb, branched chain ketoacid dehydrogenase E1, beta polypeptide, [RH, Score=525, Expect=0.0]} {Dmel: FBgn0039993, CG17691, [RH, Score=469, Expect=3e-166]} {Celegans: WBGene00006518, bckd-1B, Branched Chain Keto acid Dehydrogenase e1 (E1) subunit, [RH, Score=422, Expect=7e-148]} {Smed: dd_Smed_v6_2949_0_1, dd_Smed_v6_2949_0_1, [RH, Score=455, Expect=2e-161]} {RNA1509_14939} {RNA1310_21545, RNA1509_14939} {RNA1509_14939, RNA815_5129.1}
2. MligTC455_30135 2662 55.45 Mlig455_026996

Neo: -

Age: Up-Up-Down

 CLUH 3.142 - 0.741 0.730 0.961 0.710 - Mlig455_026996 {REF} {Length: 6297} {TRANSSPLICED} {Pfam: Clustered mitochondria [PF13236.8, score=234.1]; Translation initiation factor eIF3 subunit 135 [PF12807.9, score=115.2]; Tetratricopeptide repeat [PF13424.8, score=71.1]; Mitochondrial function, CLU-N-term [PF15044.8, score=45.4]; Tetratricopeptide repeat [PF13374.8, score=36.9]} {Human: ENSG00000132361, CLUH, clustered mitochondria homolog, [RH, Score=557, Expect=2e-175]} {Mouse: ENSMUSG00000020741, Cluh, clustered mitochondria (cluA/CLU1) homolog, [RH, Score=560, Expect=7e-176]} {Dmel: FBgn0034087, clu, clueless, [RH, Score=553, Expect=2e-172]} {Celegans: WBGene00000550, clu-1, Clustered mitochondria protein homolog, [RH, Score=595, Expect=0.0]} {Smed: dd_Smed_v6_1597_0_1, dd_Smed_v6_1597_0_1, [RH, Score=552, Expect=9e-174]} {RNA1509_1206, RNA1509_32690, RNA1509_7296} {RNA1310_185.1, RNA1509_1206, RNA1509_32690, RNA1509_7296} {RNA1509_1206, RNA1509_32690, RNA1509_7296, RNA815_370}
3. MligTC455_34473 598 12.47 Mlig455_036863, Mlig455_053003, Mlig455_053063

Neo: -

Age: -

Region-enriched R4: 2.292/0.01294

 0.967 - - - 0.967 - -

Mlig455_036863 {REF} {Length: 1169} {RNA1509_37218} {RNA1310_6141} {RNA815_9194.1}

Mlig455_053003 {REF} {Length: 1917} {RNA1509_37218} {RNA1310_6141, RNA1509_37218} {RNA1509_37218, RNA815_9194.1}

Mlig455_053063 {REF} {Length: 1376} {RNA1509_37218} {RNA1310_6141} {RNA815_9194.1}
4. MligTC455_46239 1406 29.29 Mlig455_040284, Mlig455_040298

Neo: -

Age: -

 DNM1L 0.964 - - - 0.964 - -

Mlig455_040284 {REF} {Length: 4109} {Pfam: Dynamin central region [PF01031.22, score=329.5]; Dynamin family [PF00350.25, score=187.5]; Dynamin GTPase effector domain [PF02212.20, score=106.9]; 50S ribosome-binding GTPase [PF01926.25, score=23.8]; AAA ATPase domain [PF13191.8, score=20.3]} {Human: ENSG00000087470, DNM1L, dynamin 1 like, [RH, Score=934, Expect=0.0]} {Mouse: ENSMUSG00000022789, Dnm1l, dynamin 1-like, [RH, Score=928, Expect=0.0]} {Dmel: FBgn0026479, Drp1, Dynamin related protein 1, [RH, Score=914, Expect=0.0]} {Celegans: WBGene00001093, drp-1, Dynamin-Related Protein; Dynamin-related protein, [RH, Score=837, Expect=0.0]} {Smed: dd_Smed_v6_1818_0_1, dd_Smed_v6_1818_0_1, [RH, Score=701, Expect=0.0]} {RNA1509_19829, RNA1509_4425, RNA1509_49692} {RNA1310_7022, RNA1509_19829, RNA1509_4425, RNA1509_49692} {RNA1509_19829, RNA1509_4425, RNA1509_49692, RNA815_5974}

Mlig455_040298 {REF} {Length: 686} {NoTransDecoderORF} {RNA1509_48585} {RNA1310_24902.1, RNA1509_48585} {RNA1509_48585, RNA815_13702.1}
5. MligTC455_23450 3559 74.14 Mlig455_053284, Mlig455_053425

Neo: Neoblast

Age: -

 GSPT1 0.952 - - - 0.952 - -

Mlig455_053284 {REF} {Length: 3030} {Pfam: Elongation factor Tu GTP binding domain [PF00009.29, score=142.6]; Elongation factor Tu C-terminal domain [PF03143.19, score=72.5]; Elongation factor Tu domain 2 [PF03144.27, score=37.0]; Ataxin-2 C-terminal region [PF07145.17, score=24.4]} {Human: ENSG00000103342, GSPT1, G1 to S phase transition 1, [RH, Score=637, Expect=0.0]; ENSG00000189369, GSPT2, G1 to S phase transition 2, [RH, Score=632, Expect=0.0]} {Mouse: ENSMUSG00000062203, Gspt1, G1 to S phase transition 1, [RH, Score=639, Expect=0.0]; ENSMUSG00000071723, Gspt2, G1 to S phase transition 2, [RH, Score=632, Expect=0.0]} {Dmel: FBgn0020443, eRF3, eukaryotic translation release factor 3, [RH, Score=627, Expect=0.0]} {Celegans: WBGene00010405, erfa-3, Eukaryotic Release FActor homolog, [RH, Score=555, Expect=0.0]} {Smed: dd_Smed_v6_1469_0_1, dd_Smed_v6_1469_0_1, [RH, Score=518, Expect=3e-180]} {RNA1509_2289} {RNA1310_5788, RNA1509_2289} {RNA1509_2289, RNA815_1880.1}

Mlig455_053425 {REF} {Length: 3016} {Pfam: Elongation factor Tu GTP binding domain [PF00009.29, score=142.6]; Elongation factor Tu C-terminal domain [PF03143.19, score=72.5]; Elongation factor Tu domain 2 [PF03144.27, score=37.0]; Ataxin-2 C-terminal region [PF07145.17, score=24.4]} {Human: ENSG00000103342, GSPT1, G1 to S phase transition 1, [RH, Score=637, Expect=0.0]; ENSG00000189369, GSPT2, G1 to S phase transition 2, [RH, Score=632, Expect=0.0]} {Mouse: ENSMUSG00000062203, Gspt1, G1 to S phase transition 1, [RH, Score=639, Expect=0.0]; ENSMUSG00000071723, Gspt2, G1 to S phase transition 2, [RH, Score=633, Expect=0.0]} {Dmel: FBgn0020443, eRF3, eukaryotic translation release factor 3, [RH, Score=627, Expect=0.0]} {Celegans: WBGene00010405, erfa-3, Eukaryotic Release FActor homolog, [RH, Score=555, Expect=0.0]} {Smed: dd_Smed_v6_1469_0_1, dd_Smed_v6_1469_0_1, [RH, Score=519, Expect=2e-180]} {RNA1509_2289, RNA1509_8337} {RNA1310_5788, RNA1509_8337} {RNA1509_8337, RNA815_1880.1}

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