TomoSeq data search

Data search

Results for MligTC455_38833

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_38833	194	4.03	Mlig455_002853	Neo: Irradiation Age: -		Mlig455_002853 {REF} {Length: 2584} {RNA1310_14024} {RNA815_46638}

Cluster

Total UMI counts

Global CPM

Transcripts

Cumulative graph for MligTC455_38833

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-4.453	2.628	0.36886	1.00000
RegionR2	-1.787	2.628	0.99828	1.00000
RegionR3	0.418	2.628	0.64148	1.00000
RegionR4	2.049	2.628	0.02120	0.10636
RegionR5	-0.081	2.628	0.88092	1.00000
RegionR6	1.099	2.628	0.19506	0.76332
RegionR7	1.22	2.628	0.24199	0.86742
RegionR8	1.534	2.628	0.20789	0.80874

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-0.724	2.628	1.00000	1.00000
RegenerationR2	0.964	2.628	0.12817	0.55252
RegenerationR3	0.463	2.628	0.43818	0.82600
RegenerationR4	-0.122	2.628	0.83427	0.99874
RegenerationR5	1.02	2.628	0.08230	0.44455
RegenerationR6	0.149	2.628	0.80084	0.97756
RegenerationBL	-1.427	2.628	0.10790	0.38787
RegenerationTP	0.078	2.628	0.92484	1.00000

Genes with expression patterns similar to MligTC455_38833

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_38833	194	4.03	Mlig455_002853	Neo: Irradiation Age: -		6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_002853 {REF} {Length: 2584} {RNA1310_14024} {RNA815_46638}
2.	MligTC455_27292	3532	73.59	Mlig455_040525	Neo: Irradiation Age: Down-Up-Up, logFC(26M/2M)=0.300 Regeneration-enriched BL: 1.630 Regeneration-enriched R6: 1.242	DEK	0.955	-	-	-	0.955	-	-	Mlig455_040525 {REF} {Length: 2029} {TRANSSPLICED} {Pfam: DEK C terminal domain [PF08766.13, score=46.8]} {Human: ENSG00000124795, DEK, DEK proto-oncogene, [RH, Score=84.7, Expect=3e-17]} {Mouse: ENSMUSG00000021377, Dek, DEK oncogene (DNA binding), [RH, Score=91.3, Expect=6e-21]} {Dmel: FBgn0026533, Dek, [RH, Score=60.5, Expect=2e-09]} {RNA1509_16091, RNA1509_23683, RNA1509_3429, RNA1509_51680, RNA1509_57384} {RNA1310_12184, RNA1509_16091, RNA1509_23683, RNA1509_3429, RNA1509_51680, RNA1509_57384} {RNA1509_16091, RNA1509_23683, RNA1509_3429, RNA1509_51680, RNA1509_57384, RNA815_16871}
3.	MligTC455_27719	6863	142.98	Mlig455_035171	Neo: - Age: logFC(26M/2M)=0.233 Region-specific R6: 3.977 Region-enriched R6: 3.545/0.00000 Region-enriched R8: 1.647/0.03238	ACTB	0.953	-	-	-	0.953	-	-	Mlig455_035171 {REF} {Length: 1884} {Pfam: Actin [PF00022.21, score=497.2]} {Human: ENSG00000075624, ACTB, actin beta, [RH, Score=759, Expect=0.0]; ENSG00000184009, ACTG1, actin gamma 1, [RH, Score=759, Expect=0.0]; ENSG00000107796, ACTA2, actin, alpha 2, smooth muscle, aorta, [RH, Score=739, Expect=0.0]; ENSG00000163017, ACTG2, actin, gamma 2, smooth muscle, enteric, [RH, Score=737, Expect=0.0]; ENSG00000159251, ACTC1, actin, alpha, cardiac muscle 1, [RH, Score=736, Expect=0.0]; ENSG00000143632, ACTA1, actin, alpha 1, skeletal muscle, [RH, Score=734, Expect=0.0]; ENSG00000169067, ACTBL2, actin, beta like 2, [RH, Score=722, Expect=0.0]} {Mouse: ENSMUSG00000062825, Actg1, actin, gamma, cytoplasmic 1, [RH, Score=759, Expect=0.0]; ENSMUSG00000029580, Actb, actin, beta, [RH, Score=759, Expect=0.0]; ENSMUSG00000035783, Acta2, actin, alpha 2, smooth muscle, aorta, [RH, Score=739, Expect=0.0]; ENSMUSG00000059430, Actg2, actin, gamma 2, smooth muscle, enteric, [RH, Score=737, Expect=0.0]; ENSMUSG00000068614, Actc1, actin, alpha, cardiac muscle 1, [RH, Score=736, Expect=0.0]; ENSMUSG00000031972, Acta1, actin, alpha 1, skeletal muscle, [RH, Score=734, Expect=0.0]; ENSMUSG00000055194, Actbl2, actin, beta-like 2, [RH, Score=727, Expect=0.0]} {Dmel: FBgn0000042, Act5C, Actin 5C, [RH, Score=763, Expect=0.0]} {Celegans: WBGene00000064, act-2, Actin-2, [RH, Score=761, Expect=0.0]} {Smed: dd_Smed_v6_3_0_1, dd_Smed_v6_3_0_1, [RH, Score=757, Expect=0.0]} {RNA1509_10205, RNA1509_34548, RNA1509_46105} {RNA1310_211, RNA1509_10205, RNA1509_34548} {RNA1509_10205, RNA1509_34548, RNA815_4929.3}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Σ Spearman correlations

Int1

Int2

Int3

Reg1

Reg2

Reg3

Annotation

MligTC455_38833

194

4.03

Mlig455_002853

Neo: Irradiation

Age: -

1.000

Mlig455_002853 {REF} {Length: 2584} {RNA1310_14024} {RNA815_46638}

MligTC455_27292

3532

73.59

Mlig455_040525

Neo: Irradiation

Age: Down-Up-Up, logFC(26M/2M)=0.300

Regeneration-enriched BL: 1.630
Regeneration-enriched R6: 1.242

DEK

0.955

Mlig455_040525 {REF} {Length: 2029} {TRANSSPLICED} {Pfam: DEK C terminal domain [PF08766.13, score=46.8]} {Human: ENSG00000124795, DEK, DEK proto-oncogene, [RH, Score=84.7, Expect=3e-17]} {Mouse: ENSMUSG00000021377, Dek, DEK oncogene (DNA binding), [RH, Score=91.3, Expect=6e-21]} {Dmel: FBgn0026533, Dek, [RH, Score=60.5, Expect=2e-09]} {RNA1509_16091, RNA1509_23683, RNA1509_3429, RNA1509_51680, RNA1509_57384} {RNA1310_12184, RNA1509_16091, RNA1509_23683, RNA1509_3429, RNA1509_51680, RNA1509_57384} {RNA1509_16091, RNA1509_23683, RNA1509_3429, RNA1509_51680, RNA1509_57384, RNA815_16871}

MligTC455_27719

6863

142.98

Mlig455_035171

Neo: -

Age: logFC(26M/2M)=0.233

Region-specific R6: 3.977

Region-enriched R6: 3.545/0.00000
Region-enriched R8: 1.647/0.03238

ACTB

0.953

Mlig455_035171 {REF} {Length: 1884} {Pfam: Actin [PF00022.21, score=497.2]} {Human: ENSG00000075624, ACTB, actin beta, [RH, Score=759, Expect=0.0]; ENSG00000184009, ACTG1, actin gamma 1, [RH, Score=759, Expect=0.0]; ENSG00000107796, ACTA2, actin, alpha 2, smooth muscle, aorta, [RH, Score=739, Expect=0.0]; ENSG00000163017, ACTG2, actin, gamma 2, smooth muscle, enteric, [RH, Score=737, Expect=0.0]; ENSG00000159251, ACTC1, actin, alpha, cardiac muscle 1, [RH, Score=736, Expect=0.0]; ENSG00000143632, ACTA1, actin, alpha 1, skeletal muscle, [RH, Score=734, Expect=0.0]; ENSG00000169067, ACTBL2, actin, beta like 2, [RH, Score=722, Expect=0.0]} {Mouse: ENSMUSG00000062825, Actg1, actin, gamma, cytoplasmic 1, [RH, Score=759, Expect=0.0]; ENSMUSG00000029580, Actb, actin, beta, [RH, Score=759, Expect=0.0]; ENSMUSG00000035783, Acta2, actin, alpha 2, smooth muscle, aorta, [RH, Score=739, Expect=0.0]; ENSMUSG00000059430, Actg2, actin, gamma 2, smooth muscle, enteric, [RH, Score=737, Expect=0.0]; ENSMUSG00000068614, Actc1, actin, alpha, cardiac muscle 1, [RH, Score=736, Expect=0.0]; ENSMUSG00000031972, Acta1, actin, alpha 1, skeletal muscle, [RH, Score=734, Expect=0.0]; ENSMUSG00000055194, Actbl2, actin, beta-like 2, [RH, Score=727, Expect=0.0]} {Dmel: FBgn0000042, Act5C, Actin 5C, [RH, Score=763, Expect=0.0]} {Celegans: WBGene00000064, act-2, Actin-2, [RH, Score=761, Expect=0.0]} {Smed: dd_Smed_v6_3_0_1, dd_Smed_v6_3_0_1, [RH, Score=757, Expect=0.0]} {RNA1509_10205, RNA1509_34548, RNA1509_46105} {RNA1310_211, RNA1509_10205, RNA1509_34548} {RNA1509_10205, RNA1509_34548, RNA815_4929.3}