TomoSeq data search

Data search

Results for MligTC455_39020

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_39020	32	0.67	Mlig455_002416, Mlig455_048830	Neo: - Age: -		Mlig455_002416 {REF} {Length: 1893} {TRANSSPLICED} {RNA1509_21391} {RNA1310_6366} {RNA815_11612} Mlig455_048830 {REF} {Length: 1892} {TRANSSPLICED} {Pfam: Protein of unknown function (DUF1258) [PF06869.14, score=18.4]} {RNA1509_21391} {RNA1310_6366} {RNA815_11612}

Cluster

Total UMI counts

Global CPM

Transcripts

Cumulative graph for MligTC455_39020

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-0.989	1.171	0.99989	1.00000
RegionR2	-0.854	1.171	0.99963	1.00000
RegionR3	3.318	1.171	0.17449	0.70153
RegionR4	1.402	1.171	0.51835	0.84352
RegionR5	0.479	1.171	0.57351	0.93185
RegionR6	-1.049	1.171	0.99915	1.00000
RegionR7	-1.102	1.171	0.99943	1.00000
RegionR8	-1.204	1.171	0.99968	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	0.502	1.171	1.00000	1.00000
RegenerationR2	3.833	1.171	0.19649	0.64135
RegenerationR3	-0.235	1.171	0.87082	1.00000
RegenerationR4	3.265	1.171	0.47254	0.85483
RegenerationR5	1.466	1.171	0.62811	0.92170
RegenerationR6	5.131	1.171	0.17762	0.51139
RegenerationBL	3.715	1.171	0.20767	0.54986
RegenerationTP	3.756	1.171	0.32119	0.76591

Genes with expression patterns similar to MligTC455_39020

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_39020	32	0.67	Mlig455_002416, Mlig455_048830	Neo: - Age: -		4	1.000	-	-	1.000	1.000	1.000	Mlig455_002416 {REF} {Length: 1893} {TRANSSPLICED} {RNA1509_21391} {RNA1310_6366} {RNA815_11612} Mlig455_048830 {REF} {Length: 1892} {TRANSSPLICED} {Pfam: Protein of unknown function (DUF1258) [PF06869.14, score=18.4]} {RNA1509_21391} {RNA1310_6366} {RNA815_11612}
2.	MligTC455_05826	98	2.03	Mlig455_023048	Neo: - Age: -		1.775	0.966	-	-	0.809	-	-	Mlig455_023048 {REF} {Length: 255} {NoTransDecoderORF} {RNA1509_15690} {RNA1310_208} {RNA815_44812}
3.	MligTC455_20083	602	12.55	Mlig455_017591, Mlig455_058808, Mlig455_058860	Neo: - Age: Down-Down-Up, logFC(26M/2M)=5.198 Region-enriched R3: 6.259/0.00385	CLCA1	0.982	0.982	-	-	-	-	-	Mlig455_017591 {REF} {Length: 3361} {Human: ENSG00000016490, CLCA1, chloride channel accessory 1, [Score=87.8, Expect=3e-18]} {Mouse: ENSMUSG00000028262, Clca3a2, chloride channel accessory 3A2, [Score=97.1, Expect=2e-21]; ENSMUSG00000037033, Clca3b, chloride channel accessory 3B, [Score=96.7, Expect=3e-21]; ENSMUSG00000056025, Clca3a1, chloride channel accessory 3A1, [Score=93.6, Expect=2e-20]} {RNA1509_12329} {RNA1310_4907, RNA1509_12329} {RNA1509_12329, RNA815_880.1} Mlig455_058808 {REF} {Length: 3017} {TRANSSPLICED} {Pfam: von Willebrand factor type A domain [PF00092.30, score=80.2]; Calcium-activated chloride channel N terminal [PF08434.13, score=70.9]; von Willebrand factor type A domain [PF13519.8, score=43.4]; von Willebrand factor type A domain [PF13768.8, score=32.3]} {Human: ENSG00000016490, CLCA1, chloride channel accessory 1, [Score=211, Expect=3e-56]} {Mouse: ENSMUSG00000028262, Clca3a2, chloride channel accessory 3A2, [Score=211, Expect=2e-56]; ENSMUSG00000056025, Clca3a1, chloride channel accessory 3A1, [Score=208, Expect=2e-55]; ENSMUSG00000028255, Clca1, chloride channel accessory 1, [Score=203, Expect=1e-53]} {Smed: dd_Smed_v6_968_0_1, dd_Smed_v6_968_0_1, [Score=132, Expect=2e-31]} {RNA1509_5258} {RNA1310_4907} {RNA815_880.1} Mlig455_058860 {REF} {Length: 3090} {TRANSSPLICED} {Pfam: Calcium-activated chloride channel N terminal [PF08434.13, score=103.0]; von Willebrand factor type A domain [PF00092.30, score=80.4]; von Willebrand factor type A domain [PF13519.8, score=42.2]; von Willebrand factor type A domain [PF13768.8, score=33.5]} {Human: ENSG00000016490, CLCA1, chloride channel accessory 1, [Score=224, Expect=1e-60]; ENSG00000016602, CLCA4, chloride channel accessory 4, [Score=214, Expect=3e-57]} {Mouse: ENSMUSG00000028262, Clca3a2, chloride channel accessory 3A2, [RH, Score=234, Expect=4e-64]} {Smed: dd_Smed_v6_3663_0_1, dd_Smed_v6_3663_0_1, [RH, Score=147, Expect=2e-36]} {RNA1509_12329} {RNA1310_4907} {RNA815_880.1}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Σ Spearman correlations

Int1

Int2

Int3

Reg1

Reg2

Reg3

Annotation

MligTC455_39020

0.67

Mlig455_002416, Mlig455_048830

Neo: -

Age: -

1.000

Mlig455_002416 {REF} {Length: 1893} {TRANSSPLICED} {RNA1509_21391} {RNA1310_6366} {RNA815_11612}

Mlig455_048830 {REF} {Length: 1892} {TRANSSPLICED} {Pfam: Protein of unknown function (DUF1258) [PF06869.14, score=18.4]} {RNA1509_21391} {RNA1310_6366} {RNA815_11612}

MligTC455_05826

2.03

Mlig455_023048

Neo: -

Age: -

1.775

0.966

0.809

Mlig455_023048 {REF} {Length: 255} {NoTransDecoderORF} {RNA1509_15690} {RNA1310_208} {RNA815_44812}

MligTC455_20083

602

12.55

Mlig455_017591, Mlig455_058808, Mlig455_058860

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=5.198

Region-enriched R3: 6.259/0.00385

CLCA1

0.982

Mlig455_017591 {REF} {Length: 3361} {Human: ENSG00000016490, CLCA1, chloride channel accessory 1, [Score=87.8, Expect=3e-18]} {Mouse: ENSMUSG00000028262, Clca3a2, chloride channel accessory 3A2, [Score=97.1, Expect=2e-21]; ENSMUSG00000037033, Clca3b, chloride channel accessory 3B, [Score=96.7, Expect=3e-21]; ENSMUSG00000056025, Clca3a1, chloride channel accessory 3A1, [Score=93.6, Expect=2e-20]} {RNA1509_12329} {RNA1310_4907, RNA1509_12329} {RNA1509_12329, RNA815_880.1}

Mlig455_058808 {REF} {Length: 3017} {TRANSSPLICED} {Pfam: von Willebrand factor type A domain [PF00092.30, score=80.2]; Calcium-activated chloride channel N terminal [PF08434.13, score=70.9]; von Willebrand factor type A domain [PF13519.8, score=43.4]; von Willebrand factor type A domain [PF13768.8, score=32.3]} {Human: ENSG00000016490, CLCA1, chloride channel accessory 1, [Score=211, Expect=3e-56]} {Mouse: ENSMUSG00000028262, Clca3a2, chloride channel accessory 3A2, [Score=211, Expect=2e-56]; ENSMUSG00000056025, Clca3a1, chloride channel accessory 3A1, [Score=208, Expect=2e-55]; ENSMUSG00000028255, Clca1, chloride channel accessory 1, [Score=203, Expect=1e-53]} {Smed: dd_Smed_v6_968_0_1, dd_Smed_v6_968_0_1, [Score=132, Expect=2e-31]} {RNA1509_5258} {RNA1310_4907} {RNA815_880.1}

Mlig455_058860 {REF} {Length: 3090} {TRANSSPLICED} {Pfam: Calcium-activated chloride channel N terminal [PF08434.13, score=103.0]; von Willebrand factor type A domain [PF00092.30, score=80.4]; von Willebrand factor type A domain [PF13519.8, score=42.2]; von Willebrand factor type A domain [PF13768.8, score=33.5]} {Human: ENSG00000016490, CLCA1, chloride channel accessory 1, [Score=224, Expect=1e-60]; ENSG00000016602, CLCA4, chloride channel accessory 4, [Score=214, Expect=3e-57]} {Mouse: ENSMUSG00000028262, Clca3a2, chloride channel accessory 3A2, [RH, Score=234, Expect=4e-64]} {Smed: dd_Smed_v6_3663_0_1, dd_Smed_v6_3663_0_1, [RH, Score=147, Expect=2e-36]} {RNA1509_12329} {RNA1310_4907} {RNA815_880.1}