TomoSeq data search

Data search

Results for MligTC455_39030

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_39030	260	5.42	Mlig455_038871, Mlig455_055374, Mlig455_061569	Neo: - Age: Up-Down-Down Region-enriched R4: 2.573/0.00608	PCDH1	Mlig455_038871 {REF} {Length: 5420} {Pfam: Cadherin domain [PF00028.19, score=209.1]; Cadherin-like [PF16184.7, score=33.5]; Cadherin-like [PF08266.14, score=26.8]} {Human: ENSG00000156453, PCDH1, protocadherin 1, [Score=191, Expect=5e-49]; ENSG00000184226, PCDH9, protocadherin 9, [Score=186, Expect=3e-47]; ENSG00000196159, FAT4, FAT atypical cadherin 4, [Score=185, Expect=2e-46]; ENSG00000099715, PCDH11Y, protocadherin 11 Y-linked, [Score=183, Expect=2e-46]; ENSG00000102290, PCDH11X, protocadherin 11 X-linked, [Score=183, Expect=3e-46]} {Mouse: ENSMUSG00000016028, Celsr1, cadherin, EGF LAG seven-pass G-type receptor 1, [Score=201, Expect=9e-52]; ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=191, Expect=5e-49]} {Dmel: FBgn0024836, stan, starry night, [Score=196, Expect=2e-50]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=153, Expect=3e-37]} {Smed: dd_Smed_v6_9106_0_1, dd_Smed_v6_9106_0_1, [Score=234, Expect=1e-63]} {RNA1509_25976, RNA1509_47314} {RNA1310_2958, RNA1509_25976, RNA1509_47314} {RNA1509_25976, RNA1509_47314, RNA815_5543} Mlig455_055374 {REF} {Length: 1156} {Celegans: WBGene00018026, F35A5.4, [Score=56.6, Expect=8e-09]} {RNA1509_25976} {RNA1310_2958} {RNA815_57152} Mlig455_061569 {REF} {Length: 5286} {Pfam: Cadherin domain [PF00028.19, score=209.1]; Cadherin-like [PF16184.7, score=33.5]; Cadherin-like [PF08266.14, score=26.8]} {Human: ENSG00000156453, PCDH1, protocadherin 1, [Score=191, Expect=5e-49]; ENSG00000184226, PCDH9, protocadherin 9, [Score=186, Expect=2e-47]; ENSG00000196159, FAT4, FAT atypical cadherin 4, [Score=185, Expect=1e-46]; ENSG00000102290, PCDH11X, protocadherin 11 X-linked, [Score=183, Expect=3e-46]; ENSG00000099715, PCDH11Y, protocadherin 11 Y-linked, [Score=183, Expect=2e-46]} {Mouse: ENSMUSG00000016028, Celsr1, cadherin, EGF LAG seven-pass G-type receptor 1, [Score=201, Expect=8e-52]; ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=191, Expect=5e-49]} {Dmel: FBgn0024836, stan, starry night, [Score=196, Expect=2e-50]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=153, Expect=3e-37]} {Smed: dd_Smed_v6_9106_0_1, dd_Smed_v6_9106_0_1, [Score=234, Expect=1e-63]} {RNA1509_25976} {RNA1310_2958} {RNA815_5543}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_39030

260

5.42

Mlig455_038871, Mlig455_055374, Mlig455_061569

Neo: -

Age: Up-Down-Down

Region-enriched R4: 2.573/0.00608

PCDH1

Mlig455_038871 {REF} {Length: 5420} {Pfam: Cadherin domain [PF00028.19, score=209.1]; Cadherin-like [PF16184.7, score=33.5]; Cadherin-like [PF08266.14, score=26.8]} {Human: ENSG00000156453, PCDH1, protocadherin 1, [Score=191, Expect=5e-49]; ENSG00000184226, PCDH9, protocadherin 9, [Score=186, Expect=3e-47]; ENSG00000196159, FAT4, FAT atypical cadherin 4, [Score=185, Expect=2e-46]; ENSG00000099715, PCDH11Y, protocadherin 11 Y-linked, [Score=183, Expect=2e-46]; ENSG00000102290, PCDH11X, protocadherin 11 X-linked, [Score=183, Expect=3e-46]} {Mouse: ENSMUSG00000016028, Celsr1, cadherin, EGF LAG seven-pass G-type receptor 1, [Score=201, Expect=9e-52]; ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=191, Expect=5e-49]} {Dmel: FBgn0024836, stan, starry night, [Score=196, Expect=2e-50]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=153, Expect=3e-37]} {Smed: dd_Smed_v6_9106_0_1, dd_Smed_v6_9106_0_1, [Score=234, Expect=1e-63]} {RNA1509_25976, RNA1509_47314} {RNA1310_2958, RNA1509_25976, RNA1509_47314} {RNA1509_25976, RNA1509_47314, RNA815_5543}

Mlig455_055374 {REF} {Length: 1156} {Celegans: WBGene00018026, F35A5.4, [Score=56.6, Expect=8e-09]} {RNA1509_25976} {RNA1310_2958} {RNA815_57152}

Mlig455_061569 {REF} {Length: 5286} {Pfam: Cadherin domain [PF00028.19, score=209.1]; Cadherin-like [PF16184.7, score=33.5]; Cadherin-like [PF08266.14, score=26.8]} {Human: ENSG00000156453, PCDH1, protocadherin 1, [Score=191, Expect=5e-49]; ENSG00000184226, PCDH9, protocadherin 9, [Score=186, Expect=2e-47]; ENSG00000196159, FAT4, FAT atypical cadherin 4, [Score=185, Expect=1e-46]; ENSG00000102290, PCDH11X, protocadherin 11 X-linked, [Score=183, Expect=3e-46]; ENSG00000099715, PCDH11Y, protocadherin 11 Y-linked, [Score=183, Expect=2e-46]} {Mouse: ENSMUSG00000016028, Celsr1, cadherin, EGF LAG seven-pass G-type receptor 1, [Score=201, Expect=8e-52]; ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=191, Expect=5e-49]} {Dmel: FBgn0024836, stan, starry night, [Score=196, Expect=2e-50]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=153, Expect=3e-37]} {Smed: dd_Smed_v6_9106_0_1, dd_Smed_v6_9106_0_1, [Score=234, Expect=1e-63]} {RNA1509_25976} {RNA1310_2958} {RNA815_5543}

Cumulative graph for MligTC455_39030

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	1.637	3.046	0.37679	1.00000
RegionR2	-0.367	3.046	0.62121	0.96520
RegionR3	-0.812	3.046	0.19343	0.73094
RegionR4	2.573	3.046	0.00051	0.00608
RegionR5	-1.675	3.046	0.01013	0.05831
RegionR6	-1.273	3.046	0.06223	0.46747
RegionR7	0.916	3.046	0.17783	0.77306
RegionR8	-0.999	3.046	0.36841	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-6.876	3.046	0.16270	0.90413
RegenerationR2	-0.297	3.046	0.62693	0.92589
RegenerationR3	0.355	3.046	0.63240	0.92141
RegenerationR4	-1.541	3.046	0.03503	0.30206
RegenerationR5	0.495	3.046	0.50196	0.85965
RegenerationR6	0.367	3.046	0.62368	0.88323
RegenerationBL	-0.369	3.046	0.71013	1.00000
RegenerationTP	-1.256	3.046	0.21746	0.66068

Genes with expression patterns similar to MligTC455_39030

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_39030	260	5.42	Mlig455_038871, Mlig455_055374, Mlig455_061569	Neo: - Age: Up-Down-Down Region-enriched R4: 2.573/0.00608	PCDH1	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_038871 {REF} {Length: 5420} {Pfam: Cadherin domain [PF00028.19, score=209.1]; Cadherin-like [PF16184.7, score=33.5]; Cadherin-like [PF08266.14, score=26.8]} {Human: ENSG00000156453, PCDH1, protocadherin 1, [Score=191, Expect=5e-49]; ENSG00000184226, PCDH9, protocadherin 9, [Score=186, Expect=3e-47]; ENSG00000196159, FAT4, FAT atypical cadherin 4, [Score=185, Expect=2e-46]; ENSG00000099715, PCDH11Y, protocadherin 11 Y-linked, [Score=183, Expect=2e-46]; ENSG00000102290, PCDH11X, protocadherin 11 X-linked, [Score=183, Expect=3e-46]} {Mouse: ENSMUSG00000016028, Celsr1, cadherin, EGF LAG seven-pass G-type receptor 1, [Score=201, Expect=9e-52]; ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=191, Expect=5e-49]} {Dmel: FBgn0024836, stan, starry night, [Score=196, Expect=2e-50]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=153, Expect=3e-37]} {Smed: dd_Smed_v6_9106_0_1, dd_Smed_v6_9106_0_1, [Score=234, Expect=1e-63]} {RNA1509_25976, RNA1509_47314} {RNA1310_2958, RNA1509_25976, RNA1509_47314} {RNA1509_25976, RNA1509_47314, RNA815_5543} Mlig455_055374 {REF} {Length: 1156} {Celegans: WBGene00018026, F35A5.4, [Score=56.6, Expect=8e-09]} {RNA1509_25976} {RNA1310_2958} {RNA815_57152} Mlig455_061569 {REF} {Length: 5286} {Pfam: Cadherin domain [PF00028.19, score=209.1]; Cadherin-like [PF16184.7, score=33.5]; Cadherin-like [PF08266.14, score=26.8]} {Human: ENSG00000156453, PCDH1, protocadherin 1, [Score=191, Expect=5e-49]; ENSG00000184226, PCDH9, protocadherin 9, [Score=186, Expect=2e-47]; ENSG00000196159, FAT4, FAT atypical cadherin 4, [Score=185, Expect=1e-46]; ENSG00000102290, PCDH11X, protocadherin 11 X-linked, [Score=183, Expect=3e-46]; ENSG00000099715, PCDH11Y, protocadherin 11 Y-linked, [Score=183, Expect=2e-46]} {Mouse: ENSMUSG00000016028, Celsr1, cadherin, EGF LAG seven-pass G-type receptor 1, [Score=201, Expect=8e-52]; ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=191, Expect=5e-49]} {Dmel: FBgn0024836, stan, starry night, [Score=196, Expect=2e-50]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=153, Expect=3e-37]} {Smed: dd_Smed_v6_9106_0_1, dd_Smed_v6_9106_0_1, [Score=234, Expect=1e-63]} {RNA1509_25976} {RNA1310_2958} {RNA815_5543}
2.	MligTC455_23969	70	1.46	Mlig455_013710	Neo: - Age: -	TRPA1	0.975	-	-	-	-	0.975	-	Mlig455_013710 {REF} {Length: 3941} {Pfam: Ankyrin repeats (many copies) [PF13637.8, score=70.6]; Ankyrin repeats (3 copies) [PF12796.9, score=67.5]; Ankyrin repeats (many copies) [PF13857.8, score=56.5]; Ankyrin repeat [PF13606.8, score=47.5]; Ankyrin repeat [PF00023.32, score=43.8]; Ion transport protein [PF00520.33, score=38.7]} {Human: ENSG00000104321, TRPA1, transient receptor potential cation channel subfamily A member 1, [Score=159, Expect=2e-40]} {Mouse: ENSMUSG00000032769, Trpa1, transient receptor potential cation channel, subfamily A, member 1, [Score=145, Expect=9e-36]} {Dmel: FBgn0035934, TrpA1, Transient receptor potential cation channel A1, [Score=184, Expect=4e-49]} {Celegans: WBGene00007801, trpa-1, Transient receptor potential cation channel subfamily A member 1 homolog, [Score=158, Expect=2e-40]} {Smed: dd_Smed_v6_20683_0_1, dd_Smed_v6_20683_0_1, [Score=266, Expect=9e-78]} {RNA1509_46488} {RNA1310_4045.1} {RNA815_14390}
3.	MligTC455_25677	200	4.18	Mlig455_037357	Neo: - Age: logFC(26M/2M)=0.427	COL24A1	0.965	-	-	-	-	0.965	-	Mlig455_037357 {REF} {Length: 7518} {tRNA: Glu(CTC), score=74.2} {Pfam: Collagen triple helix repeat (20 copies) [PF01391.20, score=450.4]; Fibrillar collagen C-terminal domain [PF01410.20, score=139.5]; von Willebrand factor type C domain [PF00093.20, score=28.3]} {Human: ENSG00000171502, COL24A1, collagen type XXIV alpha 1 chain, [Score=366, Expect=1e-103]} {Mouse: ENSMUSG00000029661, Col1a2, collagen, type I, alpha 2, [Score=370, Expect=3e-106]} {Dmel: FBgn0000299, Col4a1, Collagen type IV alpha 1, [Score=341, Expect=1e-95]} {Celegans: WBGene00001263, emb-9, Collagen alpha-1(IV) chain, [Score=307, Expect=4e-85]} {Smed: dd_Smed_v6_8075_0_1, dd_Smed_v6_8075_0_1, [Score=466, Expect=1e-139]} {RNA1509_12827, RNA1509_6841} {RNA1310_1385.1, RNA1509_12827} {RNA1509_12827, RNA815_7264}
4.	MligTC455_45519	148	3.08	Mlig455_011435, Mlig455_061176	Neo: - Age: -		0.965	-	-	0.965	-	-	-	Mlig455_011435 {REF} {Length: 2322} {RNA1310_38993} {RNA815_43660} Mlig455_061176 {REF} {Length: 3147} {RNA1509_51062} {RNA1310_38993} {RNA815_43660}
5.	MligTC455_47851	36	0.76	Mlig455_047832	Neo: - Age: -	PACRGL	0.961	-	-	-	-	0.961	-	Mlig455_047832 {REF} {Length: 1939} {Pfam: Parkin co-regulated protein [PF10274.11, score=119.9]} {Human: ENSG00000163138, PACRGL, parkin coregulated like, [RH, Score=167, Expect=1e-51]} {Mouse: ENSMUSG00000029089, 5730480H06Rik, RIKEN cDNA 5730480H06 gene, [RH, Score=152, Expect=1e-45]} {Dmel: FBgn0034454, CG15120, [Score=62.0, Expect=2e-11]} {RNA1310_58381}
6.	MligTC455_52585	294	6.12	Mlig455_045239	Neo: - Age: -	ERICH3	0.954	-	-	0.954	-	-	-	Mlig455_045239 {REF} {Length: 3780} {Pfam: Domain of unknown function (DUF4590) [PF15257.8, score=127.4]} {Human: ENSG00000178965, ERICH3, glutamate rich 3, [Score=119, Expect=2e-26]} {Mouse: ENSMUSG00000078161, Erich3, glutamate rich 3, [Score=117, Expect=5e-26]} {Smed: dd_Smed_v6_8627_0_1, dd_Smed_v6_8627_0_1, [Score=117, Expect=1e-26]} {RNA1509_55217} {RNA1310_4688.1} {RNA815_38425}
7.	MligTC455_51516	1758	36.63	Mlig455_013231, Mlig455_013304	Neo: - Age: -	DAB2IP	0.95	-	-	-	-	0.950	-	Mlig455_013231 {REF} {Length: 4993} {Pfam: C2 domain [PF00168.32, score=38.7]} {Human: ENSG00000136848, DAB2IP, DAB2 interacting protein, [Score=130, Expect=1e-31]} {Mouse: ENSMUSG00000026883, Dab2ip, disabled 2 interacting protein, [Score=133, Expect=8e-33]} {Dmel: FBgn0261570, CG42684, [Score=145, Expect=5e-37]} {Celegans: WBGene00001516, gap-2, Ras GTPase-activating protein gap-2, [Score=113, Expect=2e-26]} {Smed: dd_Smed_v6_3238_0_1, dd_Smed_v6_3238_0_1, [Score=107, Expect=1e-24]} {RNA1509_45404} {RNA1310_15354.1} {RNA815_3372} Mlig455_013304 {REF} {Length: 3952} {Pfam: GTPase-activator protein for Ras-like GTPase [PF00616.21, score=77.2]; C2 domain [PF00168.32, score=37.3]} {Human: ENSG00000136848, DAB2IP, DAB2 interacting protein, [Score=352, Expect=4e-104]} {Mouse: ENSMUSG00000026883, Dab2ip, disabled 2 interacting protein, [Score=350, Expect=2e-104]} {Dmel: FBgn0261570, CG42684, [Score=344, Expect=6e-100]} {Celegans: WBGene00001516, gap-2, Ras GTPase-activating protein gap-2, [Score=332, Expect=4e-98]} {Smed: dd_Smed_v6_3238_0_1, dd_Smed_v6_3238_0_1, [RH, Score=284, Expect=3e-80]} {RNA1509_45404} {RNA1310_15354.1} {RNA815_3372}
8.	MligTC455_52586	230	4.78	Mlig455_069158	Neo: - Age: -		0.95	-	-	0.950	-	-	-	Mlig455_069158 {REF} {Length: 3154} {RNA1509_45748, RNA1509_55217} {RNA1310_4688.1, RNA1509_45748} {RNA1509_45748, RNA815_38425}