M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_39130

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_39130 669 13.95 Mlig455_019074, Mlig455_064293

Neo: -

Age: -

 SLC16A12, SLC16A14

Mlig455_019074 {REF} {Length: 2671} {Pfam: Major Facilitator Superfamily [PF07690.18, score=127.5]} {Human: ENSG00000163053, SLC16A14, solute carrier family 16 member 14, [Score=125, Expect=4e-30]; ENSG00000152779, SLC16A12, solute carrier family 16 member 12, [Score=124, Expect=2e-29]} {Mouse: ENSMUSG00000026220, Slc16a14, solute carrier family 16 (monocarboxylic acid transporters), member 14, [Score=121, Expect=1e-28]; ENSMUSG00000009378, Slc16a12, solute carrier family 16 (monocarboxylic acid transporters), member 12, [Score=119, Expect=4e-28]; ENSMUSG00000041920, Slc16a6, solute carrier family 16 (monocarboxylic acid transporters), member 6, [Score=119, Expect=8e-28]} {Dmel: FBgn0033028, CG11665, [Score=151, Expect=2e-38]} {Celegans: WBGene00003986, mct-4, MonoCarboxylate Transporter family, [Score=102, Expect=1e-22]} {Smed: dd_Smed_v6_9402_0_1, dd_Smed_v6_9402_0_1, [Score=117, Expect=1e-27]} {RNA1509_22159} {RNA1310_6776} {RNA815_11602}

Mlig455_064293 {REF} {Length: 2673} {Pfam: SpoIIIAH-like protein [PF12685.9, score=21.9]; Major Facilitator Superfamily [PF07690.18, score=18.6]} {Human: ENSG00000152779, SLC16A12, solute carrier family 16 member 12, [Score=55.8, Expect=2e-08]} {Mouse: ENSMUSG00000009378, Slc16a12, solute carrier family 16 (monocarboxylic acid transporters), member 12, [Score=54.7, Expect=3e-08]} {Dmel: FBgn0033028, CG11665, [Score=51.2, Expect=3e-07]} {Smed: dd_Smed_v6_10683_0_1, dd_Smed_v6_10683_0_1, [Score=49.7, Expect=7e-07]} {RNA1509_22159} {RNA1310_6776} {RNA815_11602}

Cumulative graph for MligTC455_39130

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.166 4.022 0.89145 1.00000
RegionR2 0.446 4.022 0.30185 0.69158
RegionR3 -0.458 4.022 0.24307 0.78575
RegionR4 0.126 4.022 0.76535 1.00000
RegionR5 -0.329 4.022 0.35910 0.71080
RegionR6 -0.851 4.022 0.04868 0.41318
RegionR7 0.423 4.022 0.40147 1.00000
RegionR8 0.808 4.022 0.20067 0.79831

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.249 4.022 0.34283 1.00000
RegenerationR2 0.664 4.022 0.02938 0.28202
RegenerationR3 0.726 4.022 0.06755 0.43692
RegenerationR4 0.055 4.022 0.88467 1.00000
RegenerationR5 0.726 4.022 0.04235 0.33770
RegenerationR6 0.892 4.022 0.03971 0.24908
RegenerationBL -0.011 4.022 0.98263 1.00000
RegenerationTP -1.297 4.022 0.02867 0.28460


Genes with expression patterns similar to MligTC455_39130

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_39130 669 13.95 Mlig455_019074, Mlig455_064293

Neo: -

Age: -

 SLC16A12, SLC16A14 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_019074 {REF} {Length: 2671} {Pfam: Major Facilitator Superfamily [PF07690.18, score=127.5]} {Human: ENSG00000163053, SLC16A14, solute carrier family 16 member 14, [Score=125, Expect=4e-30]; ENSG00000152779, SLC16A12, solute carrier family 16 member 12, [Score=124, Expect=2e-29]} {Mouse: ENSMUSG00000026220, Slc16a14, solute carrier family 16 (monocarboxylic acid transporters), member 14, [Score=121, Expect=1e-28]; ENSMUSG00000009378, Slc16a12, solute carrier family 16 (monocarboxylic acid transporters), member 12, [Score=119, Expect=4e-28]; ENSMUSG00000041920, Slc16a6, solute carrier family 16 (monocarboxylic acid transporters), member 6, [Score=119, Expect=8e-28]} {Dmel: FBgn0033028, CG11665, [Score=151, Expect=2e-38]} {Celegans: WBGene00003986, mct-4, MonoCarboxylate Transporter family, [Score=102, Expect=1e-22]} {Smed: dd_Smed_v6_9402_0_1, dd_Smed_v6_9402_0_1, [Score=117, Expect=1e-27]} {RNA1509_22159} {RNA1310_6776} {RNA815_11602}

Mlig455_064293 {REF} {Length: 2673} {Pfam: SpoIIIAH-like protein [PF12685.9, score=21.9]; Major Facilitator Superfamily [PF07690.18, score=18.6]} {Human: ENSG00000152779, SLC16A12, solute carrier family 16 member 12, [Score=55.8, Expect=2e-08]} {Mouse: ENSMUSG00000009378, Slc16a12, solute carrier family 16 (monocarboxylic acid transporters), member 12, [Score=54.7, Expect=3e-08]} {Dmel: FBgn0033028, CG11665, [Score=51.2, Expect=3e-07]} {Smed: dd_Smed_v6_10683_0_1, dd_Smed_v6_10683_0_1, [Score=49.7, Expect=7e-07]} {RNA1509_22159} {RNA1310_6776} {RNA815_11602}
2. MligTC455_32428 352 7.33 Mlig455_013946

Neo: -

Age: -

 NWD2 2.532 - - - 0.731 0.970 0.831 Mlig455_013946 {REF} {Length: 7112} {TRANSSPLICED} {Pfam: NACHT domain [PF05729.14, score=45.6]; AAA ATPase domain [PF13191.8, score=41.4]; Domain of unknown function (DUF4062) [PF13271.8, score=40.6]; AAA domain [PF13401.8, score=24.5]; ATPase domain predominantly from Archaea [PF01637.20, score=20.2]} {Human: ENSG00000174145, NWD2, NACHT and WD repeat domain containing 2, [Score=431, Expect=4e-131]} {Mouse: ENSMUSG00000090061, Nwd2, NACHT and WD repeat domain containing 2, [Score=426, Expect=2e-129]} {Dmel: FBgn0038397, CG10185, [Score=520, Expect=4e-164]} {Celegans: WBGene00020254, T05C3.2, [Score=530, Expect=2e-167]} {Smed: dd_Smed_v6_11085_0_1, dd_Smed_v6_11085_0_1, [Score=323, Expect=7e-94]} {RNA1509_3054} {RNA1310_322} {RNA815_139.1}
3. MligTC455_21542 450 9.38 Mlig455_048019

Neo: -

Age: -

 TBC1D32 1.845 - - - - 0.980 0.865 Mlig455_048019 {REF} {Length: 4789} {TRANSSPLICED} {Pfam: Broad-minded protein [PF14961.8, score=920.1]} {Human: ENSG00000146350, TBC1D32, TBC1 domain family member 32, [RH, Score=607, Expect=0.0]} {Mouse: ENSMUSG00000038122, Tbc1d32, TBC1 domain family, member 32, [RH, Score=639, Expect=0.0]} {Smed: dd_Smed_v6_16049_0_1, dd_Smed_v6_16049_0_1, [RH, Score=506, Expect=5e-157]} {RNA1509_53921, RNA1509_6706} {RNA1310_1384, RNA1509_53921} {RNA1509_53921, RNA815_17065}
4. MligTC455_52329 1769 36.86 Mlig455_045833, Mlig455_045849

Neo: -

Age: -

 1.836 - - - 0.882 - 0.954

Mlig455_045833 {REF} {Length: 837} {TRANSSPLICED} {Pfam: SAM domain (Sterile alpha motif) [PF07647.19, score=51.8]; SAM domain (Sterile alpha motif) [PF00536.32, score=43.7]} {Mouse: ENSMUSG00000090812, Samd15, sterile alpha motif domain containing 15, [RH, Score=107, Expect=3e-27]} {Celegans: WBGene00006444, shn-1, SHaNk (SH3/ankyrin domain scaffold protein) related, [Score=48.9, Expect=3e-07]} {Smed: dd_Smed_v6_7783_0_1, dd_Smed_v6_7783_0_1, [RH, Score=150, Expect=2e-47]} {RNA1509_12014} {RNA1310_41932} {RNA815_20511}

Mlig455_045849 {REF} {Length: 846} {TRANSSPLICED} {Pfam: SAM domain (Sterile alpha motif) [PF07647.19, score=51.8]; SAM domain (Sterile alpha motif) [PF00536.32, score=43.7]} {Mouse: ENSMUSG00000090812, Samd15, sterile alpha motif domain containing 15, [RH, Score=107, Expect=3e-27]} {Celegans: WBGene00006444, shn-1, SHaNk (SH3/ankyrin domain scaffold protein) related, [Score=48.9, Expect=3e-07]} {Smed: dd_Smed_v6_7783_0_1, dd_Smed_v6_7783_0_1, [RH, Score=150, Expect=2e-47]} {RNA1509_12014, RNA1509_44683} {RNA1310_41932, RNA1509_12014, RNA1509_44683} {RNA1509_12014, RNA1509_44683, RNA815_20511}
5. MligTC455_31469 1076 22.43 Mlig455_002483

Neo: -

Age: Down-Up-Down

 CCDC189 1.773 - - - 0.818 - 0.955 Mlig455_002483 {REF} {Length: 6604} {Pfam: Flagellar C1a complex subunit C1a-32 [PF14769.8, score=83.5]; PDZ domain [PF00595.26, score=76.3]; PDZ domain [PF17820.3, score=70.7]; PDZ domain [PF13180.8, score=43.3]; Tricorn protease PDZ domain [PF14685.8, score=23.4]} {Human: ENSG00000196118, CCDC189, coiled-coil domain containing 189, [Score=100, Expect=2e-22]} {Mouse: ENSMUSG00000057176, Ccdc189, coiled-coil domain containing 189, [Score=107, Expect=9e-25]} {Dmel: FBgn0024728, Slip1, [Score=61.6, Expect=3e-09]} {Celegans: WBGene00016846, C50F7.6, [Score=69.3, Expect=2e-12]} {Smed: dd_Smed_v6_12703_0_1, dd_Smed_v6_12703_0_1, [Score=117, Expect=6e-29]} {RNA1509_34490, RNA1509_53384} {RNA1310_23890, RNA1509_53384} {RNA1509_53384, RNA815_12270.1}
6. MligTC455_36535 423 8.81 Mlig455_032715

Neo: -

Age: -

 SYS1 0.965 - - - 0.965 - - Mlig455_032715 {REF} {Length: 1675} {TRANSSPLICED} {Pfam: Integral membrane protein S linking to the trans Golgi network [PF09801.11, score=154.9]} {Human: ENSG00000204070, SYS1, SYS1, golgi trafficking protein, [RH, Score=142, Expect=9e-44]} {Mouse: ENSMUSG00000045503, Sys1, SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae), [RH, Score=143, Expect=3e-44]} {Dmel: FBgn0037603, CG11753, [RH, Score=121, Expect=2e-35]} {Celegans: WBGene00020193, T03F1.12, [RH, Score=100, Expect=8e-28]} {RNA1509_23153, RNA1509_37958} {RNA1310_26666, RNA1509_37958} {RNA1509_37958, RNA815_15598}
7. MligTC455_48643 997 20.78 Mlig455_062585

Neo: -

Age: -

 TBC1D30 0.963 - - - 0.963 - - Mlig455_062585 {REF} {Length: 4312} {TRANSSPLICED} {Pfam: Rab-GTPase-TBC domain [PF00566.20, score=120.0]} {Human: ENSG00000111490, TBC1D30, TBC1 domain family member 30, [RH, Score=404, Expect=8e-127]} {Mouse: ENSMUSG00000052302, Tbc1d30, TBC1 domain family, member 30, [RH, Score=406, Expect=1e-127]} {Dmel: FBgn0261928, CG42795, [RH, Score=309, Expect=2e-87]} {Celegans: WBGene00015410, tbc-6, Growth hormone-regulated TBC protein 6, [Score=107, Expect=4e-25]} {Smed: dd_Smed_v6_6508_0_1, dd_Smed_v6_6508_0_1, [RH, Score=475, Expect=2e-152]} {RNA1509_16721, RNA1509_17210, RNA1509_52239} {RNA1310_5240, RNA1509_16721, RNA1509_17210, RNA1509_52239} {RNA1509_16721, RNA1509_17210, RNA1509_52239, RNA815_1005.1}
8. MligTC455_43371 5012 104.41 Mlig455_014772, Mlig455_014831

Neo: -

Age: -

 DPY30 0.961 - - - - - 0.961

Mlig455_014772 {REF} {Length: 1035} {Pfam: Dpy-30 motif [PF05186.15, score=68.3]} {Human: ENSG00000162961, DPY30, dpy-30, histone methyltransferase complex regulatory subunit, [RH, Score=95.1, Expect=3e-26]} {Mouse: ENSMUSG00000024067, Dpy30, dpy-30, histone methyltransferase complex regulatory subunit, [RH, Score=95.5, Expect=2e-26]} {Dmel: FBgn0035491, Dpy-30L2, Dpy-30-like 2, [RH, Score=71.2, Expect=4e-17]} {Celegans: WBGene00001088, dpy-30, Dosage compensation protein dpy-30, [RH, Score=77.8, Expect=2e-19]} {Smed: dd_Smed_v6_9103_0_1, dd_Smed_v6_9103_0_1, [RH, Score=83.6, Expect=6e-22]} {RNA1509_4264} {RNA1310_13189.1} {RNA815_5530.1}

Mlig455_014831 {REF} {Length: 1343} {Pfam: Dpy-30 motif [PF05186.15, score=68.3]} {Human: ENSG00000162961, DPY30, dpy-30, histone methyltransferase complex regulatory subunit, [RH, Score=95.1, Expect=3e-26]} {Mouse: ENSMUSG00000024067, Dpy30, dpy-30, histone methyltransferase complex regulatory subunit, [RH, Score=95.5, Expect=2e-26]} {Dmel: FBgn0035491, Dpy-30L2, Dpy-30-like 2, [RH, Score=71.2, Expect=4e-17]} {Celegans: WBGene00001088, dpy-30, Dosage compensation protein dpy-30, [RH, Score=77.8, Expect=2e-19]} {Smed: dd_Smed_v6_9103_0_1, dd_Smed_v6_9103_0_1, [RH, Score=83.6, Expect=6e-22]} {RNA1509_4264} {RNA1310_13189.1} {RNA815_5530.1}
9. MligTC455_47495 903 18.8 Mlig455_043613, Mlig455_043638

Neo: -

Age: -

 ANKRD10 0.959 - - - - 0.959 -

Mlig455_043613 {REF} {Length: 4205} {TRANSSPLICED} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=88.5]; Ankyrin repeats (many copies) [PF13637.8, score=67.1]; Ankyrin repeat [PF00023.32, score=62.5]; Ankyrin repeats (many copies) [PF13857.8, score=61.2]; Ankyrin repeat [PF13606.8, score=60.0]} {Human: ENSG00000088448, ANKRD10, ankyrin repeat domain 10, [RH, Score=134, Expect=4e-36]} {Mouse: ENSMUSG00000031508, Ankrd10, ankyrin repeat domain 10, [RH, Score=129, Expect=2e-35]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=73.2, Expect=2e-14]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=75.5, Expect=2e-15]} {Smed: dd_Smed_v6_12122_0_1, dd_Smed_v6_12122_0_1, [Score=73.9, Expect=7e-15]} {RNA1509_22783, RNA1509_34499, RNA1509_58946} {RNA1310_30780.1, RNA1509_22783, RNA1509_34499, RNA1509_58946} {RNA1509_22783, RNA1509_34499, RNA1509_58946, RNA815_13913}

Mlig455_043638 {REF} {Length: 12609} {TRANSSPLICED} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=86.8]; Ankyrin repeats (many copies) [PF13637.8, score=71.0]; Ankyrin repeats (many copies) [PF13857.8, score=61.0]; Ankyrin repeat [PF00023.32, score=60.7]; Ankyrin repeat [PF13606.8, score=57.9]} {Human: ENSG00000088448, ANKRD10, ankyrin repeat domain 10, [RH, Score=130, Expect=5e-35]} {Mouse: ENSMUSG00000031508, Ankrd10, ankyrin repeat domain 10, [RH, Score=126, Expect=2e-34]} {Dmel: FBgn0011747, Ank, Ankyrin, [Score=72.8, Expect=3e-14]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=74.3, Expect=7e-15]} {Smed: dd_Smed_v6_12122_0_1, dd_Smed_v6_12122_0_1, [Score=70.5, Expect=8e-14]} {RNA1509_40620} {RNA1310_30780.1} {RNA815_13913}
10. MligTC455_40190 1534 31.97 Mlig455_057325

Neo: -

Age: -

Region-enriched R2: 1.359/0.01983

 HSPB11 0.953 - - - - - 0.953 Mlig455_057325 {REF} {Length: 1635} {TRANSSPLICED} {Pfam: F5/8 type C domain [PF00754.27, score=20.3]} {Human: ENSG00000081870, HSPB11, heat shock protein family B (small) member 11, [RH, Score=86.3, Expect=6e-22]} {Mouse: ENSMUSG00000063172, Hspb11, heat shock protein family B (small), member 11, [RH, Score=84.7, Expect=2e-21]} {Smed: dd_Smed_v6_13161_0_1, dd_Smed_v6_13161_0_1, [RH, Score=85.9, Expect=2e-22]} {RNA1509_11950, RNA1509_6912} {RNA1310_29814.1, RNA1509_11950, RNA1509_6912} {RNA1509_11950, RNA1509_6912, RNA815_32361}
11. MligTC455_12463 10623 221.32 Mlig455_061264, Mlig455_062651

Neo: -

Age: -

 DYNLT1 0.951 - - - - - 0.951

Mlig455_061264 {REF} {Length: 1419} {TRANSSPLICED} {Pfam: Tctex-1 family [PF03645.15, score=108.7]} {Human: ENSG00000146425, DYNLT1, dynein light chain Tctex-type 1, [RH, Score=164, Expect=1e-53]} {Mouse: ENSMUSG00000096255, Dynlt1b, dynein light chain Tctex-type 1B, [RH, Score=164, Expect=1e-53]; ENSMUSG00000000579, Dynlt1c, dynein light chain Tctex-type 1C, [RH, Score=164, Expect=1e-53]; ENSMUSG00000095677, Dynlt1f, dynein light chain Tctex-type 1F, [RH, Score=164, Expect=1e-53]; ENSMUSG00000092074, Dynlt1a, dynein light chain Tctex-type 1A, [RH, Score=164, Expect=1e-53]} {Dmel: FBgn0024432, Dlc90F, Dynein light chain 90F, [RH, Score=157, Expect=4e-51]} {Celegans: WBGene00008764, dylt-1, DYnein Light chain (Tctex type), [RH, Score=74.3, Expect=2e-18]} {Smed: dd_Smed_v6_1166_0_1, dd_Smed_v6_1166_0_1, [RH, Score=174, Expect=3e-58]} {RNA1509_12146} {RNA1310_42844} {RNA815_27135.1}

Mlig455_062651 {REF} {Length: 1440} {TRANSSPLICED} {Pfam: Tctex-1 family [PF03645.15, score=108.7]} {Human: ENSG00000146425, DYNLT1, dynein light chain Tctex-type 1, [RH, Score=164, Expect=1e-53]} {Mouse: ENSMUSG00000096255, Dynlt1b, dynein light chain Tctex-type 1B, [RH, Score=164, Expect=1e-53]; ENSMUSG00000000579, Dynlt1c, dynein light chain Tctex-type 1C, [RH, Score=164, Expect=1e-53]; ENSMUSG00000095677, Dynlt1f, dynein light chain Tctex-type 1F, [RH, Score=164, Expect=1e-53]; ENSMUSG00000092074, Dynlt1a, dynein light chain Tctex-type 1A, [RH, Score=164, Expect=1e-53]} {Dmel: FBgn0024432, Dlc90F, Dynein light chain 90F, [RH, Score=157, Expect=4e-51]} {Celegans: WBGene00008764, dylt-1, DYnein Light chain (Tctex type), [RH, Score=74.3, Expect=2e-18]} {Smed: dd_Smed_v6_1166_0_1, dd_Smed_v6_1166_0_1, [RH, Score=174, Expect=3e-58]} {RNA1509_12146, RNA1509_3087} {RNA1310_42844, RNA1509_3087} {RNA1509_3087, RNA815_31870.1}
12. MligTC455_37987 2273 47.34 Mlig455_056341

Neo: -

Age: Down-Down-Up

Region-enriched R2: 1.300/0.02178

 TTC29 0.95 - - - - 0.950 - Mlig455_056341 {REF} {Length: 2088} {TRANSSPLICED} {Pfam: Tetratricopeptide repeat [PF13424.8, score=45.1]; Tetratricopeptide repeat [PF00515.30, score=35.9]; Tetratricopeptide repeat [PF13176.8, score=30.9]; Tetratricopeptide repeat [PF13432.8, score=21.7]; Tetratricopeptide repeat [PF07719.19, score=18.6]} {Human: ENSG00000137473, TTC29, tetratricopeptide repeat domain 29, [RH, Score=225, Expect=5e-67]} {Mouse: ENSMUSG00000037101, Ttc29, tetratricopeptide repeat domain 29, [RH, Score=231, Expect=8e-70]} {Smed: dd_Smed_v6_9158_0_2, dd_Smed_v6_9158_0_2, [RH, Score=315, Expect=3e-102]} {RNA1509_17910, RNA1509_22067, RNA1509_4506, RNA1509_47666} {RNA1310_12639.1, RNA1509_17910, RNA1509_22067, RNA1509_4506, RNA1509_47666} {RNA1509_17910, RNA1509_22067, RNA1509_4506, RNA1509_47666, RNA815_4532}
13. MligTC455_49051 805 16.78 Mlig455_066445

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=0.489

Region-enriched R3: 1.119/0.04587

 PACRG 0.95 - - - - - 0.950 Mlig455_066445 {REF} {Length: 1665} {Pfam: Parkin co-regulated protein [PF10274.11, score=61.5]} {Human: ENSG00000112530, PACRG, parkin coregulated, [RH, Score=92.4, Expect=1e-25]} {Mouse: ENSMUSG00000037196, Pacrg, PARK2 co-regulated, [Score=97.1, Expect=5e-26]} {Dmel: FBgn0034454, CG15120, [Score=85.1, Expect=4e-21]} {Celegans: WBGene00017122, pcrg-1, Parkin Co-Regulated Gene (PACRG) homolog, [Score=42.7, Expect=7e-06]} {Smed: dd_Smed_v6_3899_0_1, dd_Smed_v6_3899_0_1, [Score=101, Expect=4e-28]} {RNA1509_678} {RNA1310_20104.1} {RNA815_152.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA