M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_39192

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_39192 2010 41.87 Mlig455_029248, Mlig455_035732

Neo: -

Age: logFC(26M/2M)=0.267

Mlig455_029248 {REF} {Length: 3151} {Pfam: Wnt and FGF inhibitory regulator [PF13908.8, score=26.0]; Commissureless [PF15957.7, score=19.4]} {Smed: dd_Smed_v6_24569_0_1, dd_Smed_v6_24569_0_1, [RH, Score=53.1, Expect=2e-08]} {RNA1509_9826} {RNA1310_20425} {RNA815_8605.1}

Mlig455_035732 {REF} {Length: 2526} {Pfam: Wnt and FGF inhibitory regulator [PF13908.8, score=25.5]; Commissureless [PF15957.7, score=19.7]} {Smed: dd_Smed_v6_24569_0_1, dd_Smed_v6_24569_0_1, [RH, Score=55.8, Expect=3e-09]} {RNA1509_29629} {RNA1310_37790} {RNA815_8605.2}

Cumulative graph for MligTC455_39192

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.401 5.586 0.55483 1.00000
RegionR2 -0.292 5.586 0.38289 0.77783
RegionR3 -0.187 5.586 0.49296 0.99032
RegionR4 0.767 5.586 0.01409 0.07879
RegionR5 0.166 5.586 0.50710 0.87016
RegionR6 -0.042 5.586 0.87800 1.00000
RegionR7 -0.034 5.586 0.91262 1.00000
RegionR8 0.023 5.586 0.95121 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -8.26 5.586 0.00927 0.43329
RegenerationR2 0.045 5.586 0.88102 1.00000
RegenerationR3 -0.083 5.586 0.79996 0.98266
RegenerationR4 -0.691 5.586 0.03589 0.30630
RegenerationR5 -0.186 5.586 0.54299 0.88197
RegenerationR6 -0.115 5.586 0.72595 0.93862
RegenerationBL 0.433 5.586 0.18502 0.51570
RegenerationTP -0.366 5.586 0.33273 0.77689


Genes with expression patterns similar to MligTC455_39192

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_39192 2010 41.87 Mlig455_029248, Mlig455_035732

Neo: -

Age: logFC(26M/2M)=0.267

 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_029248 {REF} {Length: 3151} {Pfam: Wnt and FGF inhibitory regulator [PF13908.8, score=26.0]; Commissureless [PF15957.7, score=19.4]} {Smed: dd_Smed_v6_24569_0_1, dd_Smed_v6_24569_0_1, [RH, Score=53.1, Expect=2e-08]} {RNA1509_9826} {RNA1310_20425} {RNA815_8605.1}

Mlig455_035732 {REF} {Length: 2526} {Pfam: Wnt and FGF inhibitory regulator [PF13908.8, score=25.5]; Commissureless [PF15957.7, score=19.7]} {Smed: dd_Smed_v6_24569_0_1, dd_Smed_v6_24569_0_1, [RH, Score=55.8, Expect=3e-09]} {RNA1509_29629} {RNA1310_37790} {RNA815_8605.2}
2. MligTC455_46770 1406 29.28 Mlig455_056157, Mlig455_058744

Neo: -

Age: logFC(26M/2M)=0.208

 ENTPD4 1.722 0.745 - - 0.977 - -

Mlig455_056157 {REF} {Length: 2483} {TRANSSPLICED} {Pfam: GDA1/CD39 (nucleoside phosphatase) family [PF01150.19, score=362.5]} {Human: ENSG00000197217, ENTPD4, ectonucleoside triphosphate diphosphohydrolase 4, [RH, Score=426, Expect=6e-141]; ENSG00000198018, ENTPD7, ectonucleoside triphosphate diphosphohydrolase 7, [RH, Score=410, Expect=8e-135]} {Mouse: ENSMUSG00000022066, Entpd4b, ectonucleoside triphosphate diphosphohydrolase 4B, [RH, Score=424, Expect=3e-140]; ENSMUSG00000095463, Entpd4, ectonucleoside triphosphate diphosphohydrolase 4, [RH, Score=424, Expect=3e-140]; ENSMUSG00000025192, Entpd7, ectonucleoside triphosphate diphosphohydrolase 7, [RH, Score=419, Expect=2e-138]} {Dmel: FBgn0024947, NTPase, [Score=96.3, Expect=9e-21]} {Celegans: WBGene00003254, mig-23, Nucleoside-diphosphatase mig-23, [RH, Score=321, Expect=2e-101]} {Smed: dd_Smed_v6_4429_0_1, dd_Smed_v6_4429_0_1, [RH, Score=291, Expect=7e-93]} {RNA1509_49185} {RNA1310_6531.1} {RNA815_2259}

Mlig455_058744 {REF} {Length: 2432} {TRANSSPLICED} {Pfam: GDA1/CD39 (nucleoside phosphatase) family [PF01150.19, score=372.5]} {Human: ENSG00000197217, ENTPD4, ectonucleoside triphosphate diphosphohydrolase 4, [RH, Score=440, Expect=6e-146]; ENSG00000198018, ENTPD7, ectonucleoside triphosphate diphosphohydrolase 7, [RH, Score=422, Expect=4e-139]} {Mouse: ENSMUSG00000022066, Entpd4b, ectonucleoside triphosphate diphosphohydrolase 4B, [RH, Score=438, Expect=2e-145]; ENSMUSG00000095463, Entpd4, ectonucleoside triphosphate diphosphohydrolase 4, [RH, Score=438, Expect=2e-145]; ENSMUSG00000025192, Entpd7, ectonucleoside triphosphate diphosphohydrolase 7, [RH, Score=430, Expect=2e-142]} {Dmel: FBgn0024947, NTPase, [Score=101, Expect=2e-22]} {Celegans: WBGene00003254, mig-23, Nucleoside-diphosphatase mig-23, [RH, Score=332, Expect=1e-105]} {Smed: dd_Smed_v6_4429_0_1, dd_Smed_v6_4429_0_1, [RH, Score=291, Expect=8e-93]} {RNA1509_58554, RNA1509_59423} {RNA1310_6867.1, RNA1509_58554} {RNA1509_58554, RNA815_2259}
3. MligTC455_48447 2514 52.37 Mlig455_029673

Neo: -

Age: -

 CCNG2 1.712 - - 0.761 0.951 - - Mlig455_029673 {REF} {Length: 4016} {Pfam: Cyclin, N-terminal domain [PF00134.25, score=42.7]} {Human: ENSG00000138764, CCNG2, cyclin G2, [RH, Score=99.0, Expect=6e-23]} {Mouse: ENSMUSG00000029385, Ccng2, cyclin G2, [RH, Score=102, Expect=6e-24]} {Dmel: FBgn0039858, CycG, Cyclin G, [RH, Score=97.1, Expect=1e-21]} {Smed: dd_Smed_v6_6866_0_1, dd_Smed_v6_6866_0_1, [RH, Score=117, Expect=9e-30]} {RNA1509_1191, RNA1509_14812, RNA1509_27451, RNA1509_34405, RNA1509_37028, RNA1509_48703, RNA1509_53871} {RNA1310_9744, RNA1509_1191, RNA1509_14812, RNA1509_27451, RNA1509_34405, RNA1509_37028, RNA1509_48703, RNA1509_53871} {RNA1509_1191, RNA1509_14812, RNA1509_27451, RNA1509_34405, RNA1509_37028, RNA1509_48703, RNA1509_53871, RNA815_3033.1}
4. MligTC455_50108 1530 31.88 Mlig455_030660

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.538

 TRPM3 1.711 - - - 0.960 0.751 - Mlig455_030660 {REF} {Length: 3971} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=70.9]; Ankyrin repeats (many copies) [PF13637.8, score=67.2]; Ion transport protein [PF00520.33, score=59.6]; Ankyrin repeat [PF13606.8, score=58.7]; Ankyrin repeat [PF00023.32, score=45.3]; Ankyrin repeats (many copies) [PF13857.8, score=43.6]} {Human: ENSG00000083067, TRPM3, transient receptor potential cation channel subfamily M member 3, [Score=148, Expect=3e-35]} {Mouse: ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=150, Expect=3e-36]} {Dmel: FBgn0016920, nompC, no mechanoreceptor potential C, [Score=78.6, Expect=3e-14]} {Celegans: WBGene00001796, gtl-2, Gon-Two Like (TRP subfamily), [Score=81.6, Expect=2e-15]} {Smed: dd_Smed_v6_26251_0_1, dd_Smed_v6_26251_0_1, [RH, Score=172, Expect=6e-44]} {RNA1509_2096} {RNA1310_2778.1} {RNA815_765}
5. MligTC455_52921 903 18.8 Mlig455_039568, Mlig455_051378

Neo: -

Age: -

 MLH3 0.966 - - - 0.966 - -

Mlig455_039568 {REF} {Length: 890} {TRANSSPLICED} {Human: ENSG00000119684, MLH3, mutL homolog 3, [RH, Score=50.4, Expect=3e-07]} {Mouse: ENSMUSG00000021245, Mlh3, mutL homolog 3, [Score=47.8, Expect=2e-06]} {Smed: dd_Smed_v6_25712_0_1, dd_Smed_v6_25712_0_1, [RH, Score=58.2, Expect=4e-11]} {RNA1509_20519} {RNA1310_40805, RNA1509_20519} {RNA1509_20519, RNA815_19876}

Mlig455_051378 {REF} {Length: 879} {TRANSSPLICED} {Human: ENSG00000119684, MLH3, mutL homolog 3, [RH, Score=50.8, Expect=3e-07]} {Mouse: ENSMUSG00000021245, Mlh3, mutL homolog 3, [Score=47.8, Expect=3e-06]} {Smed: dd_Smed_v6_25712_0_1, dd_Smed_v6_25712_0_1, [RH, Score=58.2, Expect=7e-11]} {RNA1509_20519} {RNA1310_40805} {RNA815_19876}
6. MligTC455_44710 1043 21.73 Mlig455_059157, Mlig455_065533

Neo: -

Age: Down-Up-Down

 CAPN9 0.964 - - - 0.964 - -

Mlig455_059157 {REF} {Length: 4269} {TRANSSPLICED} {Pfam: Calpain family cysteine protease [PF00648.23, score=343.7]; Calpain large subunit, domain III [PF01067.24, score=126.9]; EF hand [PF00036.34, score=25.4]; EF-hand domain [PF13405.8, score=25.2]} {Human: ENSG00000135773, CAPN9, calpain 9, [Score=452, Expect=1e-146]} {Mouse: ENSMUSG00000031981, Capn9, calpain 9, [Score=446, Expect=5e-144]} {Dmel: FBgn0025866, CalpB, Calpain-B, [Score=457, Expect=7e-146]} {Celegans: WBGene00000542, clp-1, Calpain clp-1, [Score=365, Expect=5e-113]} {Smed: dd_Smed_v6_4499_0_1, dd_Smed_v6_4499_0_1, [RH, Score=491, Expect=8e-160]} {RNA1509_11645} {RNA1310_4797.1} {RNA815_16849}

Mlig455_065533 {REF} {Length: 3264} {TRANSSPLICED} {Pfam: Calpain family cysteine protease [PF00648.23, score=340.7]; Calpain large subunit, domain III [PF01067.24, score=129.6]; EF-hand domain [PF13405.8, score=27.7]; EF hand [PF00036.34, score=27.3]; EF-hand domain pair [PF13499.8, score=20.5]} {Human: ENSG00000135773, CAPN9, calpain 9, [Score=460, Expect=1e-152]} {Mouse: ENSMUSG00000031981, Capn9, calpain 9, [Score=455, Expect=7e-151]} {Dmel: FBgn0025866, CalpB, Calpain-B, [Score=449, Expect=1e-145]} {Celegans: WBGene00000542, clp-1, Calpain clp-1, [Score=363, Expect=2e-115]} {Smed: dd_Smed_v6_4499_0_1, dd_Smed_v6_4499_0_1, [RH, Score=492, Expect=2e-163]} {RNA1509_11645} {RNA1310_4797.1, RNA1509_11645} {RNA1509_11645, RNA815_16849}
7. MligTC455_31760 453 9.44 Mlig455_048312, Mlig455_048355

Neo: Irradiation

Age: -

Region-enriched R5: 1.879/0.00328

 TMEM209 0.962 - - - 0.962 - -

Mlig455_048312 {REF} {Length: 3580} {Pfam: Cytochrome B561, N terminal [PF09786.11, score=93.4]} {Human: ENSG00000146842, TMEM209, transmembrane protein 209, [RH, Score=105, Expect=4e-23]} {Mouse: ENSMUSG00000029782, Tmem209, transmembrane protein 209, [RH, Score=104, Expect=1e-23]} {Dmel: FBgn0036710, CG6479, [RH, Score=82.0, Expect=6e-16]} {Celegans: WBGene00007186, B0464.6, [RH, Score=74.7, Expect=9e-14]} {RNA1509_13752} {RNA1310_3609.1, RNA1509_13752} {RNA1509_13752, RNA815_2171}

Mlig455_048355 {REF} {Length: 2791} {TRANSSPLICED} {Pfam: Cytochrome B561, N terminal [PF09786.11, score=92.6]} {Human: ENSG00000146842, TMEM209, transmembrane protein 209, [RH, Score=105, Expect=4e-23]} {Mouse: ENSMUSG00000029782, Tmem209, transmembrane protein 209, [RH, Score=105, Expect=1e-23]} {Dmel: FBgn0036710, CG6479, [RH, Score=81.6, Expect=6e-16]} {Celegans: WBGene00007186, B0464.6, [RH, Score=75.1, Expect=9e-14]} {RNA1509_13752} {RNA1310_3609.2} {RNA815_2171}
8. MligTC455_30427 370 7.7 Mlig455_014862, Mlig455_014902, Mlig455_014903, Mlig455_024518, Mlig455_052526

Neo: -

Age: Up-Down-Up

 0.957 - - - 0.957 - -

Mlig455_014862 {REF} {Length: 4961} {Pfam: Pentapeptide repeats (9 copies) [PF13599.8, score=39.6]} {RNA1509_13222} {RNA1310_59923} {RNA815_11419.1}

Mlig455_014902 {REF} {Length: 149} {Pfam: NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial [PF15880.7, score=23.5]} {RNA1509_57968}

Mlig455_014903 {REF} {Length: 149} {Pfam: NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial [PF15880.7, score=23.5]} {RNA1509_57968}

Mlig455_024518 {REF} {Length: 4185} {NoTransDecoderORF} {RNA1509_3398} {RNA1310_24716.1} {RNA815_11419.1}

Mlig455_052526 {REF} {Length: 804} {NoTransDecoderORF} {RNA1509_25657} {RNA1310_41739} {RNA815_34613}
9. MligTC455_51875 649 13.52 Mlig455_070117

Neo: -

Age: -

 INTS1 0.955 - - - - - 0.955 Mlig455_070117 {REF} {Length: 7090} {Pfam: Protein of unknown function (DUF3677) [PF12432.10, score=62.2]} {Human: ENSG00000164880, INTS1, integrator complex subunit 1, [RH, Score=405, Expect=1e-113]} {Mouse: ENSMUSG00000029547, Ints1, integrator complex subunit 1, [RH, Score=405, Expect=8e-114]} {Dmel: FBgn0034964, IntS1, Integrator 1, [RH, Score=345, Expect=1e-95]} {Celegans: WBGene00015499, inst-1, INtegrator complex SubuniT 1 homolog, [RH, Score=72.8, Expect=3e-12]} {Smed: dd_Smed_v6_2322_0_2, dd_Smed_v6_2322_0_2, [RH, Score=161, Expect=2e-39]} {RNA1509_5844} {RNA1310_413.1} {RNA815_1627}
10. MligTC455_35064 2048 42.66 Mlig455_035858

Neo: -

Age: logFC(26M/2M)=-0.186

 MPP6 0.954 - - - 0.954 - - Mlig455_035858 {REF} {Length: 2803} {TRANSSPLICED} {Pfam: Guanylate kinase [PF00625.23, score=130.3]; Variant SH3 domain [PF07653.19, score=34.5]; SH3 domain [PF00018.30, score=31.6]; PDZ domain [PF00595.26, score=29.2]; PDZ domain [PF17820.3, score=24.9]; Variant SH3 domain [PF14604.8, score=24.6]; AAA domain [PF13401.8, score=21.4]; AAA ATPase domain [PF13191.8, score=20.0]} {Human: ENSG00000105926, MPP6, membrane palmitoylated protein 6, [RH, Score=338, Expect=1e-109]} {Mouse: ENSMUSG00000038388, Mpp6, membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6), [Score=343, Expect=2e-110]; ENSMUSG00000017314, Mpp2, membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2), [Score=341, Expect=3e-109]} {Dmel: FBgn0250785, vari, varicose, [Score=311, Expect=4e-97]} {Celegans: WBGene00002991, lin-2, [Score=285, Expect=2e-87]} {Smed: dd_Smed_v6_5287_0_1, dd_Smed_v6_5287_0_1, [RH, Score=410, Expect=1e-135]} {RNA1509_14924, RNA1509_2984} {RNA1310_5044, RNA1509_14924, RNA1509_2984} {RNA1509_14924, RNA1509_2984, RNA815_1589}
11. MligTC455_22103 166 3.47 Mlig455_062441

Neo: Int S/G2/M

Age: -

 0.953 - - - 0.953 - - Mlig455_062441 {REF} {Length: 393} {NoTransDecoderORF} {RNA1509_41536} {RNA1310_30840.1} {RNA815_17486.1}
12. MligTC455_27747 2105 43.85 Mlig455_026626

Neo: -

Age: -

 USP43 0.951 - - - 0.951 - - Mlig455_026626 {REF} {Length: 4552} {Pfam: Ubiquitin carboxyl-terminal hydrolase [PF00443.31, score=211.3]; Ubiquitin carboxyl-terminal hydrolase [PF13423.8, score=52.1]} {Human: ENSG00000154914, USP43, ubiquitin specific peptidase 43, [RH, Score=285, Expect=5e-80]} {Mouse: ENSMUSG00000020905, Usp43, ubiquitin specific peptidase 43, [RH, Score=287, Expect=1e-80]; ENSMUSG00000063317, Usp31, ubiquitin specific peptidase 31, [RH, Score=274, Expect=1e-75]} {Dmel: FBgn0050421, Usp15-31, Ubiquitin specific protease 15/31, [RH, Score=248, Expect=2e-67]} {Celegans: WBGene00019259, H34C03.2, Ubiquitin carboxyl-terminal hydrolase, [Score=113, Expect=3e-25]} {Smed: dd_Smed_v6_9753_0_1, dd_Smed_v6_9753_0_1, [RH, Score=218, Expect=3e-58]} {RNA1509_1499, RNA1509_50475, RNA1509_57789} {RNA1310_1291, RNA1509_50475, RNA1509_57789} {RNA1509_50475, RNA1509_57789, RNA815_779.1}
13. MligTC455_52077 958 19.95 Mlig455_002776, Mlig455_006834, Mlig455_055155

Neo: -

Age: -

 NXF1, NXF2, NXF2B 0.951 - - - - - 0.951

Mlig455_002776 {REF} {Length: 3408} {Pfam: TAP C-terminal domain [PF03943.15, score=70.5]; Tap, RNA-binding [PF09162.12, score=66.9]; Leucine Rich repeats (2 copies) [PF12799.9, score=21.4]} {Human: ENSG00000162231, NXF1, nuclear RNA export factor 1, [RH, Score=229, Expect=2e-66]; ENSG00000269405, NXF2, nuclear RNA export factor 2, [RH, Score=228, Expect=1e-65]; ENSG00000269437, NXF2B, nuclear RNA export factor 2B, [RH, Score=228, Expect=1e-65]} {Mouse: ENSMUSG00000010097, Nxf1, nuclear RNA export factor 1, [RH, Score=228, Expect=7e-66]} {Dmel: FBgn0003321, sbr, small bristles, [RH, Score=207, Expect=6e-58]} {Celegans: WBGene00003834, nxf-1, Nuclear RNA export factor 1, [RH, Score=138, Expect=3e-34]} {Smed: dd_Smed_v6_12265_0_1, dd_Smed_v6_12265_0_1, [RH, Score=166, Expect=3e-44]} {RNA1509_32141, RNA1509_39393, RNA1509_6988} {RNA1310_8445.2, RNA1509_32141, RNA1509_39393, RNA1509_6988} {RNA1509_32141, RNA1509_39393, RNA1509_6988, RNA815_4098.1}

Mlig455_006834 {REF} {Length: 682} {Pfam: TAP C-terminal domain [PF03943.15, score=34.4]} {Human: ENSG00000269405, NXF2, nuclear RNA export factor 2, [Score=66.2, Expect=2e-12]; ENSG00000269437, NXF2B, nuclear RNA export factor 2B, [Score=66.2, Expect=2e-12]} {Dmel: FBgn0003321, sbr, small bristles, [Score=57.8, Expect=6e-10]} {Smed: dd_Smed_v6_6082_0_1, dd_Smed_v6_6082_0_1, [Score=62.0, Expect=2e-11]} {RNA1509_58063} {RNA1310_8445.2} {RNA815_4098.1}

Mlig455_055155 {REF} {Length: 681} {Pfam: TAP C-terminal domain [PF03943.15, score=34.4]} {Human: ENSG00000269437, NXF2B, nuclear RNA export factor 2B, [Score=66.2, Expect=2e-12]; ENSG00000269405, NXF2, nuclear RNA export factor 2, [Score=66.2, Expect=2e-12]} {Dmel: FBgn0003321, sbr, small bristles, [Score=58.2, Expect=5e-10]} {Smed: dd_Smed_v6_6082_0_1, dd_Smed_v6_6082_0_1, [Score=61.6, Expect=2e-11]} {RNA1509_58063} {RNA1310_8445.2} {RNA815_4098.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA