M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_39213

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_39213 93 1.93 Mlig455_070142

Neo: -

Age: -

 SLIT2 Mlig455_070142 {REF} {Length: 4143} {Pfam: Leucine rich repeat [PF13855.8, score=54.6]; Leucine Rich repeats (2 copies) [PF12799.9, score=51.2]; TMEM154 protein family [PF15102.8, score=22.5]; Leucine rich repeat N-terminal domain [PF01462.20, score=21.3]; Endothelial cell-specific chemotaxis regulator [PF15820.7, score=19.9]; Wnt and FGF inhibitory regulator [PF13908.8, score=19.3]} {Human: ENSG00000145147, SLIT2, slit guidance ligand 2, [Score=52.0, Expect=5e-06]; ENSG00000198739, LRRTM3, leucine rich repeat transmembrane neuronal 3, [Score=51.2, Expect=6e-06]} {Mouse: ENSMUSG00000031558, Slit2, slit guidance ligand 2, [Score=54.7, Expect=5e-07]} {RNA1509_36831} {RNA1310_6539.1} {RNA815_7072}

Cumulative graph for MligTC455_39213

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -4.768 1.973 0.35665 0.99966
RegionR2 1.821 1.973 0.12716 0.44232
RegionR3 1.277 1.973 0.20492 0.74496
RegionR4 0.449 1.973 0.67558 0.97101
RegionR5 -0.667 1.973 0.97276 1.00000
RegionR6 1.155 1.973 0.26828 0.85706
RegionR7 0.575 1.973 0.65465 1.00000
RegionR8 0.159 1.973 0.83481 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.899 1.973 0.99986 1.00000
RegenerationR2 -0.275 1.973 0.71666 0.96229
RegenerationR3 -0.629 1.973 0.45709 0.83628
RegenerationR4 -0.496 1.973 0.59508 0.91121
RegenerationR5 1.057 1.973 0.20684 0.64012
RegenerationR6 -0.34 1.973 0.70709 0.92881
RegenerationBL 0.629 1.973 0.58653 0.93712
RegenerationTP -0.349 1.973 0.80470 1.00000


Genes with expression patterns similar to MligTC455_39213

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_39213 93 1.93 Mlig455_070142

Neo: -

Age: -

 SLIT2 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_070142 {REF} {Length: 4143} {Pfam: Leucine rich repeat [PF13855.8, score=54.6]; Leucine Rich repeats (2 copies) [PF12799.9, score=51.2]; TMEM154 protein family [PF15102.8, score=22.5]; Leucine rich repeat N-terminal domain [PF01462.20, score=21.3]; Endothelial cell-specific chemotaxis regulator [PF15820.7, score=19.9]; Wnt and FGF inhibitory regulator [PF13908.8, score=19.3]} {Human: ENSG00000145147, SLIT2, slit guidance ligand 2, [Score=52.0, Expect=5e-06]; ENSG00000198739, LRRTM3, leucine rich repeat transmembrane neuronal 3, [Score=51.2, Expect=6e-06]} {Mouse: ENSMUSG00000031558, Slit2, slit guidance ligand 2, [Score=54.7, Expect=5e-07]} {RNA1509_36831} {RNA1310_6539.1} {RNA815_7072}
2. MligTC455_35668 85 1.77 Mlig455_044043

Neo: -

Age: -

 1.761 - - 0.797 - - 0.964 Mlig455_044043 {REF} {Length: 1932} {Pfam: Sperm tail C-terminal domain [PF14775.8, score=18.6]} {RNA1310_53193.1} {RNA815_30415}
3. MligTC455_23949 72 1.5 Mlig455_015145, Mlig455_015269

Neo: -

Age: -

 1.74 0.771 - - 0.969 - -

Mlig455_015145 {REF} {Length: 1093} {Pfam: Concanavalin A-like lectin/glucanases superfamily [PF13385.8, score=57.2]} {RNA1310_34740} {RNA815_15663}

Mlig455_015269 {REF} {Length: 2195} {Pfam: Concanavalin A-like lectin/glucanases superfamily [PF13385.8, score=58.4]} {RNA1310_34740} {RNA815_15663}
4. MligTC455_11212 66 1.38 Mlig455_069909

Neo: -

Age: -

Region-enriched R4: 4.111/0.02748

 1.724 - - - 0.771 - 0.953 Mlig455_069909 {REF} {Length: 1945} {NoTransDecoderORF} {RNA1509_9725} {RNA1310_56853} {RNA815_29618}
5. MligTC455_47690 277 5.77 Mlig455_001541

Neo: -

Age: -

 UBTD2 1.709 - - 0.755 - - 0.954 Mlig455_001541 {REF} {Length: 3532} {Pfam: Ubiquitin-binding domain [PF16455.7, score=120.2]; Ubiquitin family [PF00240.25, score=33.4]} {Human: ENSG00000168246, UBTD2, ubiquitin domain containing 2, [RH, Score=216, Expect=7e-70]} {Mouse: ENSMUSG00000044949, Ubtd2, ubiquitin domain containing 2, [RH, Score=217, Expect=2e-70]} {Dmel: FBgn0264712, CG1172, [RH, Score=194, Expect=3e-61]} {Smed: dd_Smed_v6_3009_0_1, dd_Smed_v6_3009_0_1, [RH, Score=199, Expect=3e-63]} {RNA1509_42408} {RNA1310_33971, RNA1509_42408} {RNA1509_42408, RNA815_29256}
6. MligTC455_51744 87 1.82 Mlig455_008026

Neo: -

Age: -

 FOXJ3 0.982 - - - - - 0.982 Mlig455_008026 {REF} {Length: 3805} {Pfam: Forkhead domain [PF00250.20, score=126.3]} {Human: ENSG00000198815, FOXJ3, forkhead box J3, [RH, Score=165, Expect=3e-46]} {Mouse: ENSMUSG00000032998, Foxj3, forkhead box J3, [RH, Score=163, Expect=4e-44]} {Dmel: FBgn0004567, slp2, sloppy paired 2, [Score=118, Expect=8e-29]} {Celegans: WBGene00001434, fkh-2, ForKHead transcription factor family, [Score=115, Expect=4e-29]} {Smed: dd_Smed_v6_12170_0_1, dd_Smed_v6_12170_0_1, [RH, Score=112, Expect=2e-26]} {RNA1509_19637} {RNA1310_12207} {RNA815_17037}
7. MligTC455_36451 93 1.94 Mlig455_019217

Neo: -

Age: -

 FBXW7 0.977 - - - - 0.977 - Mlig455_019217 {REF} {Length: 2707} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=132.2]; F-box-like [PF12937.9, score=48.0]; F-box domain [PF00646.35, score=32.2]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=23.4]; Nucleoporin Nup120/160 [PF11715.10, score=22.5]} {Human: ENSG00000109670, FBXW7, F-box and WD repeat domain containing 7, [RH, Score=430, Expect=5e-143]} {Mouse: ENSMUSG00000028086, Fbxw7, F-box and WD-40 domain protein 7, [RH, Score=429, Expect=8e-143]} {Dmel: FBgn0041171, ago, archipelago, [RH, Score=415, Expect=2e-131]} {Celegans: WBGene00004767, sel-10, F-box/WD repeat-containing protein sel-10, [RH, Score=310, Expect=3e-98]} {Smed: dd_Smed_v6_8211_0_1, dd_Smed_v6_8211_0_1, [RH, Score=280, Expect=1e-88]} {RNA1509_19180, RNA1509_52969} {RNA1310_4381, RNA1509_19180, RNA1509_52969} {RNA1509_19180, RNA1509_52969, RNA815_6050}
8. MligTC455_09655 13 0.26 Mlig455_002777

Neo: -

Age: -

 0.969 - - - - 0.969 - Mlig455_002777 {REF} {Length: 1047} {NoTransDecoderORF} {RNA1310_21447}
9. MligTC455_31776 140 2.92 Mlig455_043183

Neo: -

Age: Down-Down-Up

 TRIM3 0.961 - - - 0.961 - - Mlig455_043183 {REF} {Length: 1456} {TRANSSPLICED} {Pfam: NHL repeat [PF01436.23, score=40.7]} {Human: ENSG00000110171, TRIM3, tripartite motif containing 3, [Score=59.3, Expect=7e-09]; ENSG00000109654, TRIM2, tripartite motif containing 2, [Score=58.2, Expect=2e-08]} {Mouse: ENSMUSG00000036989, Trim3, tripartite motif-containing 3, [Score=59.3, Expect=5e-09]; ENSMUSG00000027993, Trim2, tripartite motif-containing 2, [Score=58.2, Expect=1e-08]} {RNA1509_15622} {RNA1310_14145.1} {RNA815_3900.1}
10. MligTC455_03094 17 0.36 Mlig455_049043

Neo: -

Age: -

 0.957 - - - - - 0.957 Mlig455_049043 {REF} {Length: 237} {NoTransDecoderORF} {RNA1509_52496} {RNA1310_59590}
11. MligTC455_07167 37 0.78 Mlig455_009702

Neo: -

Age: -

 0.955 - - - - - 0.955 Mlig455_009702 {REF} {Length: 2152}
12. MligTC455_35669 113 2.35 Mlig455_044042

Neo: -

Age: Down-Down-Up

 MDN1 0.954 - - - - - 0.954 Mlig455_044042 {REF} {Length: 7304} {TRANSSPLICED} {Pfam: AAA domain (dynein-related subfamily) [PF07728.16, score=296.1]; Midasin AAA lid domain [PF17867.3, score=95.6]; ATPase family associated with various cellular activities (AAA) [PF07726.13, score=81.9]; ATPase family associated with various cellular activities (AAA) [PF00004.31, score=79.7]; AAA ATPase domain [PF13191.8, score=79.4]; Midasin AAA lid domain [PF17865.3, score=72.6]; P-loop containing dynein motor region [PF12775.9, score=67.5]; AAA domain [PF13401.8, score=66.8]; Sigma-54 interaction domain [PF14532.8, score=56.0]; AAA domain [PF13238.8, score=51.9]; ABC transporter [PF00005.29, score=49.0]; Threonylcarbamoyl adenosine biosynthesis protein TsaE [PF02367.19, score=45.5]; AAA domain [PF13173.8, score=41.4]; AAA domain [PF13604.8, score=39.9]; RNA helicase [PF00910.24, score=39.6]; Sigma-54 interaction domain [PF00158.28, score=38.2]; MoxR domain in the MoxR-vWA-beta-propeller ternary systems [PF20030.1, score=37.0]; Hydrolytic ATP binding site of dynein motor region [PF12774.9, score=36.2]; Rad17 P-loop domain [PF03215.17, score=34.9]; Dynein heavy chain region D6 P-loop domain [PF03028.17, score=34.1]; RsgA GTPase [PF03193.18, score=33.2]; Protein of unknown function (DUF815) [PF05673.15, score=33.0]; NACHT domain [PF05729.14, score=33.0]; Holliday junction DNA helicase RuvB P-loop domain [PF05496.14, score=30.0]; AAA domain [PF13671.8, score=30.0]; AAA domain [PF13521.8, score=29.8]; Ethanolamine utilisation - propanediol utilisation [PF10662.11, score=29.7]; ATPase domain predominantly from Archaea [PF01637.20, score=29.2]; P-loop containing region of AAA domain [PF13555.8, score=28.2]; Magnesium chelatase, subunit ChlI [PF01078.23, score=27.1]; 50S ribosome-binding GTPase [PF01926.25, score=25.4]; AAA domain (Cdc48 subfamily) [PF07724.16, score=25.4]; Zeta toxin [PF06414.14, score=24.2]; Deoxynucleoside kinase [PF01712.21, score=24.1]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=22.5]; Chloramphenicol phosphotransferase-like protein [PF07931.14, score=22.1]; AAA domain [PF13476.8, score=22.0]; Viral (Superfamily 1) RNA helicase [PF01443.20, score=21.3]; Conserved hypothetical ATP binding protein [PF03029.19, score=21.3]; Bacterial TniB protein [PF05621.13, score=20.6]; AAA domain [PF13481.8, score=20.3]; mRNA cleavage and polyadenylation factor CLP1 P-loop [PF16575.7, score=19.1]} {Human: ENSG00000112159, MDN1, midasin AAA ATPase 1, [Score=1132, Expect=0.0]} {Mouse: ENSMUSG00000058006, Mdn1, midasin AAA ATPase 1, [Score=1141, Expect=0.0]} {Dmel: FBgn0033661, CG13185, [Score=981, Expect=0.0]} {Celegans: WBGene00018898, F55F10.1, Midasin, [Score=784, Expect=0.0]} {Smed: dd_Smed_v6_12419_0_1, dd_Smed_v6_12419_0_1, [Score=551, Expect=5e-164]} {RNA1509_58959} {RNA1310_572.1} {RNA815_18229}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA