M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_39384

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_39384 171 3.56 Mlig455_065092

Neo: -

Age: -

 ZFP62 Mlig455_065092 {REF} {Length: 5307} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=104.6]; C2H2-type zinc finger [PF13894.8, score=93.2]; C2H2-type zinc finger [PF13912.8, score=52.1]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=27.9]; Zinc-finger of C2H2 type [PF12874.9, score=24.2]} {Human: ENSG00000196670, ZFP62, ZFP62 zinc finger protein, [Score=92.8, Expect=3e-18]; ENSG00000198440, ZNF583, zinc finger protein 583, [Score=89.4, Expect=2e-17]} {Mouse: ENSMUSG00000057101, Zfp180, zinc finger protein 180, [Score=89.0, Expect=2e-17]; ENSMUSG00000095362, Gm14325, predicted gene 14325, [Score=88.2, Expect=2e-17]; ENSMUSG00000030443, Zfp583, zinc finger protein 583, [Score=88.2, Expect=3e-17]; ENSMUSG00000046311, Zfp62, zinc finger protein 62, [Score=87.8, Expect=6e-17]} {Dmel: FBgn0020309, crol, crooked legs, [Score=79.3, Expect=2e-14]} {Celegans: WBGene00021931, Y55F3AM.14, [Score=72.4, Expect=2e-12]} {RNA1509_43194} {RNA1310_1292, RNA1509_43194} {RNA1509_43194, RNA815_2738.1}

Cumulative graph for MligTC455_39384

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.201 2.237 0.93163 1.00000
RegionR2 1.64 2.237 0.09862 0.38609
RegionR3 0.36 2.237 0.63806 1.00000
RegionR4 -1.404 2.237 0.20574 0.48778
RegionR5 -3.024 2.237 0.00325 0.02509
RegionR6 0.644 2.237 0.42385 0.99021
RegionR7 2.109 2.237 0.02056 0.26632
RegionR8 -0.525 2.237 0.74508 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 2.97 2.237 0.21690 0.95327
RegenerationR2 0.19 2.237 0.81036 0.99304
RegenerationR3 0.217 2.237 0.81607 0.98640
RegenerationR4 0.877 2.237 0.44228 0.83832
RegenerationR5 1.982 2.237 0.07978 0.43883
RegenerationR6 1.316 2.237 0.15230 0.47798
RegenerationBL 1.26 2.237 0.25109 0.60725
RegenerationTP 0.551 2.237 0.64479 0.98594


Genes with expression patterns similar to MligTC455_39384

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_39384 171 3.56 Mlig455_065092

Neo: -

Age: -

 ZFP62 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_065092 {REF} {Length: 5307} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=104.6]; C2H2-type zinc finger [PF13894.8, score=93.2]; C2H2-type zinc finger [PF13912.8, score=52.1]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=27.9]; Zinc-finger of C2H2 type [PF12874.9, score=24.2]} {Human: ENSG00000196670, ZFP62, ZFP62 zinc finger protein, [Score=92.8, Expect=3e-18]; ENSG00000198440, ZNF583, zinc finger protein 583, [Score=89.4, Expect=2e-17]} {Mouse: ENSMUSG00000057101, Zfp180, zinc finger protein 180, [Score=89.0, Expect=2e-17]; ENSMUSG00000095362, Gm14325, predicted gene 14325, [Score=88.2, Expect=2e-17]; ENSMUSG00000030443, Zfp583, zinc finger protein 583, [Score=88.2, Expect=3e-17]; ENSMUSG00000046311, Zfp62, zinc finger protein 62, [Score=87.8, Expect=6e-17]} {Dmel: FBgn0020309, crol, crooked legs, [Score=79.3, Expect=2e-14]} {Celegans: WBGene00021931, Y55F3AM.14, [Score=72.4, Expect=2e-12]} {RNA1509_43194} {RNA1310_1292, RNA1509_43194} {RNA1509_43194, RNA815_2738.1}
2. MligTC455_40810 75 1.56 Mlig455_009123, Mlig455_021293

Neo: -

Age: Up-Down-Down

 NYNRIN 2.528 - - - 0.955 0.859 0.714

Mlig455_009123 {REF} {Length: 6436} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=110.4]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=95.8]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=69.5]; Integrase zinc binding domain [PF17921.3, score=53.2]; Integrase core domain [PF00665.28, score=44.5]; H2C2 zinc finger [PF09337.12, score=20.6]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=73.2, Expect=3e-12]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=68.6, Expect=5e-11]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=314, Expect=2e-90]} {RNA1509_37150} {RNA1310_27350} {RNA815_53591}

Mlig455_021293 {REF} {Length: 3539} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=110.5]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=95.9]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=90.7]; Integrase zinc binding domain [PF17921.3, score=53.3]; Integrase core domain [PF00665.28, score=44.5]; H2C2 zinc finger [PF09337.12, score=20.7]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=75.1, Expect=8e-13]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=70.1, Expect=2e-11]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=313, Expect=3e-90]} {RNA1509_24311} {RNA1310_18657.1} {RNA815_49943}
3. MligTC455_46054 113 2.34 Mlig455_047566

Neo: -

Age: -

 1.836 - - 0.977 0.859 - - Mlig455_047566 {REF} {Length: 3957} {RNA1509_22963} {RNA1310_2801, RNA1509_22963} {RNA1509_22963, RNA815_21724}
4. MligTC455_42601 438 9.12 Mlig455_019930

Neo: -

Age: -

Region-enriched R7: 1.726/0.03073

 1.703 - 0.745 - - - 0.958 Mlig455_019930 {REF} {Length: 618} {TRANSSPLICED} {Pfam: PLAC8 family [PF04749.19, score=78.5]} {Smed: dd_Smed_v6_477_0_1, dd_Smed_v6_477_0_1, [RH, Score=129, Expect=2e-40]} {RNA1509_14839} {RNA1310_21645} {RNA815_8854.1}
5. MligTC455_37749 41 0.86 Mlig455_041848

Neo: -

Age: Up-Down-Up

 1.674 0.714 - - - - 0.960 Mlig455_041848 {REF} {Length: 3268} {Smed: dd_Smed_v6_13730_0_1, dd_Smed_v6_13730_0_1, [Score=168, Expect=4e-43]} {RNA1509_52343} {RNA1310_5679} {RNA815_10252}
6. MligTC455_16755 280 5.84 Mlig455_050205, Mlig455_066950

Neo: -

Age: -

Region-enriched R2: 3.333/0.01357

 0.98 - - 0.980 - - -

Mlig455_050205 {REF} {Length: 1757} {TRANSSPLICED} {Pfam: Mediator complex protein [PF10280.11, score=40.6]} {Smed: dd_Smed_v6_9527_0_1, dd_Smed_v6_9527_0_1, [RH, Score=68.6, Expect=2e-15]} {RNA1509_46152, RNA1509_49192} {RNA1310_50235.2, RNA1509_49192} {RNA1509_49192, RNA815_30385}

Mlig455_066950 {REF} {Length: 1820} {TRANSSPLICED} {Pfam: Mediator complex protein [PF10280.11, score=40.6]} {Smed: dd_Smed_v6_9527_0_1, dd_Smed_v6_9527_0_1, [RH, Score=68.6, Expect=2e-15]} {RNA1509_43954, RNA1509_46152} {RNA1310_50235.1, RNA1509_43954, RNA1509_46152} {RNA1509_43954, RNA1509_46152, RNA815_30385}
7. MligTC455_30465 66 1.38 Mlig455_002563

Neo: -

Age: -

 RMC1 0.973 - - - - 0.973 - Mlig455_002563 {REF} {Length: 3380} {TRANSSPLICED} {Pfam: Colon cancer-associated protein Mic1-like [PF07035.14, score=182.4]} {Human: ENSG00000141452, RMC1, regulator of MON1-CCZ1, [RH, Score=428, Expect=4e-140]} {Mouse: ENSMUSG00000024410, Rmc1, regulator of MON1-CCZ1, [RH, Score=420, Expect=4e-137]} {Dmel: FBgn0035703, CG8270, [RH, Score=240, Expect=2e-69]} {Celegans: WBGene00021738, Y50D4A.4, [RH, Score=178, Expect=2e-47]} {RNA1509_11982} {RNA1310_9639} {RNA815_7076}
8. MligTC455_31589 281 5.85 Mlig455_061267, Mlig455_062654

Neo: Irradiation

Age: Up-Down-Down

Region-enriched R5: 2.632/0.00015

 0.967 - - - 0.967 - -

Mlig455_061267 {REF} {Length: 2572} {TRANSSPLICED} {RNA1509_28161} {RNA1310_8643} {RNA815_2213}

Mlig455_062654 {REF} {Length: 2995} {TRANSSPLICED} {RNA1509_28161} {RNA1310_8643} {RNA815_2213}
9. MligTC455_35505 126 2.62 Mlig455_018997, Mlig455_022533, Mlig455_055707

Neo: -

Age: -

 HRH2, SYT7 0.963 - - - - - 0.963

Mlig455_018997 {REF} {Length: 4854} {Pfam: C2 domain [PF00168.32, score=156.5]} {Human: ENSG00000011347, SYT7, synaptotagmin 7, [RH, Score=271, Expect=9e-84]} {Mouse: ENSMUSG00000024743, Syt7, synaptotagmin VII, [RH, Score=261, Expect=3e-81]} {Dmel: FBgn0039900, Syt7, Synaptotagmin 7, [RH, Score=243, Expect=4e-76]} {Celegans: WBGene00004926, snt-6, SyNapTotagmin, [RH, Score=182, Expect=1e-53]} {Smed: dd_Smed_v6_4222_0_1, dd_Smed_v6_4222_0_1, [Score=199, Expect=6e-60]} {RNA1310_29722} {RNA815_16467}

Mlig455_022533 {REF} {Length: 1223} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=80.1]} {Human: ENSG00000113749, HRH2, histamine receptor H2, [Score=68.6, Expect=4e-12]} {Mouse: ENSMUSG00000044338, Aplnr, apelin receptor, [Score=64.3, Expect=7e-11]; ENSMUSG00000037424, Taar9, trace amine-associated receptor 9, [Score=63.9, Expect=9e-11]; ENSMUSG00000034987, Hrh2, histamine receptor H2, [Score=63.2, Expect=2e-10]} {Dmel: FBgn0039595, AstA-R2, Allatostatin A receptor 2, [Score=53.1, Expect=2e-07]} {Smed: dd_Smed_v6_15036_0_1, dd_Smed_v6_15036_0_1, [Score=63.2, Expect=9e-11]}

Mlig455_055707 {REF} {Length: 2803} {Pfam: C2 domain [PF00168.32, score=156.6]} {Human: ENSG00000011347, SYT7, synaptotagmin 7, [RH, Score=270, Expect=2e-83]} {Mouse: ENSMUSG00000024743, Syt7, synaptotagmin VII, [RH, Score=259, Expect=4e-81]} {Dmel: FBgn0039900, Syt7, Synaptotagmin 7, [RH, Score=243, Expect=2e-76]} {Celegans: WBGene00004926, snt-6, SyNapTotagmin, [RH, Score=182, Expect=1e-53]} {Smed: dd_Smed_v6_4222_0_1, dd_Smed_v6_4222_0_1, [Score=199, Expect=4e-60]} {RNA1310_29722} {RNA815_16467}
10. MligTC455_25485 167 3.48 Mlig455_030724

Neo: -

Age: Up-Up-Down

 GABBR1 0.962 - - - - - 0.962 Mlig455_030724 {REF} {Length: 4167} {Human: ENSG00000204681, GABBR1, gamma-aminobutyric acid type B receptor subunit 1, [Score=76.3, Expect=3e-15]; ENSG00000232632, GABBR1, gamma-aminobutyric acid type B receptor subunit 1, [Score=76.3, Expect=3e-15]; ENSG00000237051, GABBR1, gamma-aminobutyric acid type B receptor subunit 1, [Score=76.3, Expect=3e-15]; ENSG00000206511, GABBR1, gamma-aminobutyric acid type B receptor subunit 1, [Score=76.3, Expect=3e-15]; ENSG00000206466, GABBR1, gamma-aminobutyric acid type B receptor subunit 1, [Score=76.3, Expect=3e-15]; ENSG00000232569, GABBR1, gamma-aminobutyric acid type B receptor subunit 1, [Score=76.3, Expect=3e-15]; ENSG00000237112, GABBR1, gamma-aminobutyric acid type B receptor subunit 1, [Score=76.3, Expect=3e-15]} {Mouse: ENSMUSG00000024462, Gabbr1, gamma-aminobutyric acid (GABA) B receptor, 1, [Score=76.3, Expect=2e-15]} {Dmel: FBgn0260446, GABA-B-R1, metabotropic GABA-B receptor subtype 1, [Score=108, Expect=1e-26]} {Celegans: WBGene00021528, gbb-1, GABA B receptor subunit; GABAB1 receptor subunit, [Score=74.3, Expect=6e-16]} {Smed: dd_Smed_v6_20665_0_2, dd_Smed_v6_20665_0_2, [Score=79.7, Expect=8e-18]} {RNA1509_21092} {RNA1310_7011.2} {RNA815_9475}
11. MligTC455_19316 221 4.6 Mlig455_050415

Neo: Irradiation

Age: -

 ZNF626 0.958 - - - 0.958 - - Mlig455_050415 {REF} {Length: 3403} {TRANSSPLICED} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=68.5]; Zinc-finger double domain [PF13465.8, score=68.0]; C2H2-type zinc finger [PF13894.8, score=56.1]; C2H2-type zinc finger [PF13912.8, score=36.3]; Zinc-finger double-stranded RNA-binding [PF12171.10, score=26.1]; Zinc ribbon domain [PF09723.12, score=25.6]; Transposase zinc-ribbon domain [PF12760.9, score=22.3]; Zic proteins zinc finger domain [PF18366.3, score=19.2]} {Human: ENSG00000188171, ZNF626, zinc finger protein 626, [Score=122, Expect=9e-30]} {Mouse: ENSMUSG00000092416, Zfp141, zinc finger protein 141, [Score=112, Expect=4e-26]; ENSMUSG00000074863, Platr25, pluripotency associated transcript 25, [Score=110, Expect=8e-26]; ENSMUSG00000054715, Zscan22, zinc finger and SCAN domain containing 22, [Score=110, Expect=9e-26]; ENSMUSG00000091183, Gm5141, predicted gene 5141, [Score=108, Expect=5e-25]; ENSMUSG00000069476, Zfp616, zinc finger protein 616, [Score=108, Expect=1e-24]; ENSMUSG00000047603, Zfp235, zinc finger protein 235, [Score=107, Expect=1e-24]; ENSMUSG00000030757, Zkscan2, zinc finger with KRAB and SCAN domains 2, [Score=107, Expect=3e-24]; ENSMUSG00000045639, Zfp629, zinc finger protein 629, [Score=107, Expect=3e-24]} {Dmel: FBgn0004618, gl, glass, [Score=112, Expect=2e-26]} {Celegans: WBGene00000483, che-1, Transcription factor che-1, [Score=97.8, Expect=2e-23]} {Smed: dd_Smed_v6_14824_0_1, dd_Smed_v6_14824_0_1, [Score=99.4, Expect=5e-23]} {RNA1509_16295, RNA1509_53463} {RNA1310_10064, RNA1509_16295, RNA1509_53463} {RNA1509_16295, RNA1509_53463, RNA815_10615}
12. MligTC455_35302 716 14.92 Mlig455_043751, Mlig455_047474

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=0.537

Region-enriched R7: 2.895/0.00066

 LPA 0.956 - - - - - 0.956

Mlig455_043751 {REF} {Length: 4818} {Pfam: Tyrosine-protein kinase ephrin type A/B receptor-like [PF07699.15, score=98.4]; MAC/Perforin domain [PF01823.21, score=50.6]; Nine Cysteines Domain of family 3 GPCR [PF07562.16, score=34.9]} {Human: ENSG00000198670, LPA, lipoprotein(a), [Score=72.4, Expect=7e-12]} {Mouse: ENSMUSG00000038677, Scube3, signal peptide, CUB domain, EGF-like 3, [Score=71.2, Expect=8e-12]} {Dmel: FBgn0031879, uif, uninflatable, [Score=81.6, Expect=6e-15]} {Celegans: WBGene00018547, clec-78, C-type LECtin, [Score=57.4, Expect=1e-07]} {Smed: dd_Smed_v6_3432_0_1, dd_Smed_v6_3432_0_1, [Score=91.7, Expect=9e-20]} {RNA1509_4450} {RNA1310_985} {RNA815_424}

Mlig455_047474 {REF} {Length: 4757} {Pfam: Tyrosine-protein kinase ephrin type A/B receptor-like [PF07699.15, score=98.4]; MAC/Perforin domain [PF01823.21, score=50.6]; Nine Cysteines Domain of family 3 GPCR [PF07562.16, score=34.9]} {Human: ENSG00000198670, LPA, lipoprotein(a), [Score=72.4, Expect=7e-12]} {Mouse: ENSMUSG00000038677, Scube3, signal peptide, CUB domain, EGF-like 3, [Score=71.2, Expect=8e-12]} {Dmel: FBgn0031879, uif, uninflatable, [Score=81.6, Expect=6e-15]} {Celegans: WBGene00018547, clec-78, C-type LECtin, [Score=57.4, Expect=1e-07]} {Smed: dd_Smed_v6_3432_0_1, dd_Smed_v6_3432_0_1, [Score=91.7, Expect=9e-20]} {RNA1509_4450, RNA1509_56626} {RNA1310_985, RNA1509_56626} {RNA1509_56626, RNA815_424}
13. MligTC455_35158 162 3.37 Mlig455_003477, Mlig455_015581

Neo: -

Age: Up-Down-Down

Region-enriched R2: 2.644/0.02439

 0.952 - - - 0.952 - -

Mlig455_003477 {REF} {Length: 4625} {Smed: dd_Smed_v6_6330_0_1, dd_Smed_v6_6330_0_1, [Score=54.7, Expect=2e-07]} {RNA1509_48507} {RNA1310_11879.1, RNA1509_48507} {RNA1509_48507, RNA815_5151}

Mlig455_015581 {REF} {Length: 4105} {Smed: dd_Smed_v6_6330_0_1, dd_Smed_v6_6330_0_1, [Score=55.1, Expect=2e-07]} {RNA1509_48507} {RNA1310_11879.1} {RNA815_5151}
14. MligTC455_40433 361 7.52 Mlig455_031964, Mlig455_032014, Mlig455_032021

Neo: -

Age: Down-Up-Up

Region-enriched R3: 2.499/0.01658

 0.952 - - - - 0.952 -

Mlig455_031964 {REF} {Length: 903} {NoTransDecoderORF} {RNA1310_46854.1} {RNA815_24444.1}

Mlig455_032014 {REF} {Length: 867} {RNA1310_46854.1} {RNA815_24444.2}

Mlig455_032021 {REF} {Length: 1020} {RNA1310_46854.1} {RNA815_24444.2}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA