M. lignano Tomo-Seq
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Results for MligTC455_39458

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_39458 12 0.25 Mlig455_006473

Neo: -

Age: -

 Mlig455_006473 {REF} {Length: 413} {RNA1509_42914} {RNA1310_127391} {RNA815_64986}

Cumulative graph for MligTC455_39458

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.211 0.633 0.99975 1.00000
RegionR2 -1.494 0.633 0.99976 1.00000
RegionR3 0.254 0.633 0.99974 1.00000
RegionR4 1.115 0.633 0.99987 1.00000
RegionR5 0.677 0.633 0.99992 1.00000
RegionR6 -0.478 0.633 0.99990 1.00000
RegionR7 -0.46 0.633 1.00000 1.00000
RegionR8 0.597 0.633 0.99992 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.133 0.633 0.99992 1.00000
RegenerationR2 -0.766 0.633 0.99995 1.00000
RegenerationR3 0.858 0.633 0.49622 0.85641
RegenerationR4 1.065 0.633 0.69214 0.95041
RegenerationR5 -0.215 0.633 0.81505 0.99293
RegenerationR6 2.412 0.633 0.41494 0.74748
RegenerationBL -1.443 0.633 0.99988 1.00000
RegenerationTP 2.132 0.633 0.88326 1.00000


Genes with expression patterns similar to MligTC455_39458

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_39458 12 0.25 Mlig455_006473

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_006473 {REF} {Length: 413} {RNA1509_42914} {RNA1310_127391} {RNA815_64986}
2. MligTC455_18325 66 1.38 Mlig455_027680

Neo: -

Age: Up-Down-Down

 MED23 0.98 - - - - 0.980 - Mlig455_027680 {REF} {Length: 5186} {TRANSSPLICED} {Pfam: Mediator complex subunit 23 [PF11573.10, score=275.4]} {Human: ENSG00000112282, MED23, mediator complex subunit 23, [RH, Score=173, Expect=5e-43]} {Mouse: ENSMUSG00000019984, Med23, mediator complex subunit 23, [RH, Score=167, Expect=3e-41]} {Dmel: FBgn0034795, MED23, Mediator complex subunit 23, [RH, Score=201, Expect=6e-52]} {Smed: dd_Smed_v6_8836_0_1, dd_Smed_v6_8836_0_1, [RH, Score=103, Expect=5e-22]} {RNA1509_13212} {RNA1310_1604} {RNA815_2253}
3. MligTC455_08052 24 0.51 Mlig455_053894

Neo: -

Age: -

 0.973 - - - - 0.973 - Mlig455_053894 {REF} {Length: 693} {NoTransDecoderORF} {RNA1509_53934} {RNA1310_52963} {RNA815_43290}
4. MligTC455_21065 377 7.86 Mlig455_026989, Mlig455_056372

Neo: -

Age: -

Region-enriched R2: 3.270/0.00071

 RABEPK 0.951 - - - - 0.951 -

Mlig455_026989 {REF} {Length: 2435} {TRANSSPLICED} {Pfam: Galactose oxidase, central domain [PF13418.8, score=102.0]; Galactose oxidase, central domain [PF13415.8, score=90.2]; Kelch motif [PF13854.8, score=79.6]; Kelch motif [PF13964.8, score=77.3]; Kelch motif [PF01344.27, score=54.6]; Kelch motif [PF07646.17, score=52.7]} {Human: ENSG00000136933, RABEPK, Rab9 effector protein with kelch motifs, [RH, Score=201, Expect=3e-60]} {Mouse: ENSMUSG00000070953, Rabepk, Rab9 effector protein with kelch motifs, [RH, Score=193, Expect=2e-57]} {Dmel: FBgn0040344, CG3711, [Score=68.9, Expect=3e-12]} {Smed: dd_Smed_v6_6387_0_1, dd_Smed_v6_6387_0_1, [Score=57.8, Expect=5e-09]} {RNA1509_13410} {RNA1310_16584} {RNA815_18867}

Mlig455_056372 {REF} {Length: 2438} {TRANSSPLICED} {Pfam: Galactose oxidase, central domain [PF13418.8, score=102.0]; Galactose oxidase, central domain [PF13415.8, score=90.2]; Kelch motif [PF13854.8, score=79.6]; Kelch motif [PF13964.8, score=77.3]; Kelch motif [PF01344.27, score=54.6]; Kelch motif [PF07646.17, score=52.7]} {Human: ENSG00000136933, RABEPK, Rab9 effector protein with kelch motifs, [RH, Score=201, Expect=3e-60]} {Mouse: ENSMUSG00000070953, Rabepk, Rab9 effector protein with kelch motifs, [RH, Score=193, Expect=2e-57]} {Dmel: FBgn0040344, CG3711, [Score=68.9, Expect=3e-12]} {Smed: dd_Smed_v6_6387_0_1, dd_Smed_v6_6387_0_1, [Score=57.8, Expect=5e-09]} {RNA1509_13410} {RNA1310_16584} {RNA815_18867}

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