M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_39590

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_39590 64 1.34 Mlig455_039755

Neo: -

Age: -

 Mlig455_039755 {REF} {Length: 1438} {RNA1310_33852} {RNA815_22333}

Cumulative graph for MligTC455_39590

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -4.529 1.658 1.00000 1.00000
RegionR2 1.98 1.658 0.20935 0.57264
RegionR3 1.347 1.658 0.28831 0.83133
RegionR4 1.569 1.658 0.25388 0.55450
RegionR5 1.616 1.658 0.18207 0.46001
RegionR6 1.501 1.658 0.24423 0.82929
RegionR7 -4.256 1.658 1.00000 1.00000
RegionR8 0.772 1.658 0.57372 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.563 1.658 0.99993 1.00000
RegenerationR2 -0.182 1.658 0.86778 1.00000
RegenerationR3 0.858 1.658 0.48731 0.85354
RegenerationR4 0.034 1.658 0.98654 1.00000
RegenerationR5 0.929 1.658 0.37949 0.78645
RegenerationR6 -0.316 1.658 0.79390 0.97405
RegenerationBL 1.203 1.658 0.49125 0.85617
RegenerationTP 1.527 1.658 0.47378 0.88338


Genes with expression patterns similar to MligTC455_39590

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_39590 64 1.34 Mlig455_039755

Neo: -

Age: -

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_039755 {REF} {Length: 1438} {RNA1310_33852} {RNA815_22333}
2. MligTC455_19072 27 0.57 Mlig455_048527

Neo: -

Age: Up-Down-Down

 0.981 - - - 0.981 - - Mlig455_048527 {REF} {Length: 3749} {RNA1509_31938} {RNA1310_23606, RNA1509_31938} {RNA1509_31938, RNA815_21282}
3. MligTC455_12323 13 0.26 Mlig455_036716

Neo: -

Age: -

 0.971 - - - - 0.971 - Mlig455_036716 {REF} {Length: 655} {NoTransDecoderORF} {RNA1509_53170} {RNA1310_116425} {RNA815_52253}
4. MligTC455_31684 15 0.3 Mlig455_005479, Mlig455_007326, Mlig455_008219, Mlig455_020543, Mlig455_027651, Mlig455_036687, Mlig455_043072, Mlig455_055393

Neo: -

Age: logFC(26M/2M)=-0.726

 0.965 - - - 0.965 - -

Mlig455_005479 {REF} {Length: 1483} {TRANSSPLICED} {Dmel: FBgn0038242, CG14852, [Score=55.5, Expect=2e-08]} {Smed: dd_Smed_v6_1574_6_89, dd_Smed_v6_1574_6_89, [Score=63.2, Expect=3e-10]} {RNA1509_9393} {RNA1310_740.1} {RNA815_41450}

Mlig455_007326 {REF} {Length: 1483} {TRANSSPLICED} {Dmel: FBgn0038242, CG14852, [Score=55.5, Expect=2e-08]} {Smed: dd_Smed_v6_1574_6_89, dd_Smed_v6_1574_6_89, [Score=63.2, Expect=3e-10]} {RNA1509_9393} {RNA1310_740.1} {RNA815_41450}

Mlig455_008219 {REF} {Length: 1480} {TRANSSPLICED} {Dmel: FBgn0038242, CG14852, [Score=55.5, Expect=2e-08]} {Smed: dd_Smed_v6_1574_6_89, dd_Smed_v6_1574_6_89, [Score=63.2, Expect=3e-10]} {RNA1509_9393} {RNA1310_740.1} {RNA815_41450}

Mlig455_020543 {REF} {Length: 1544} {Smed: dd_Smed_v6_1574_6_89, dd_Smed_v6_1574_6_89, [Score=71.2, Expect=3e-13]} {RNA1509_41793} {RNA1310_8110} {RNA815_38821}

Mlig455_027651 {REF} {Length: 1505} {Pfam: WSC domain [PF01822.21, score=50.0]} {RNA1509_53783} {RNA1310_34968.1} {RNA815_24434}

Mlig455_036687 {REF} {Length: 3290} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=103.7]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=71.7]; Integrase zinc binding domain [PF17921.3, score=50.9]; Integrase core domain [PF00665.28, score=50.8]; PIF1-like helicase [PF05970.16, score=33.5]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=52.0, Expect=6e-06]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=148, Expect=3e-36]} {RNA1509_9393} {RNA1310_4313.1} {RNA815_29579}

Mlig455_043072 {REF} {Length: 2803} {Dmel: FBgn0038242, CG14852, [Score=55.5, Expect=2e-08]} {Smed: dd_Smed_v6_1574_6_89, dd_Smed_v6_1574_6_89, [Score=63.2, Expect=3e-10]} {RNA1509_9393} {RNA1310_740.1} {RNA815_41450}

Mlig455_055393 {REF} {Length: 1483} {TRANSSPLICED} {Dmel: FBgn0038242, CG14852, [Score=55.5, Expect=2e-08]} {Smed: dd_Smed_v6_1574_6_89, dd_Smed_v6_1574_6_89, [Score=63.2, Expect=3e-10]} {RNA1509_9393} {RNA1310_740.1} {RNA815_41450}
5. MligTC455_36451 93 1.94 Mlig455_019217

Neo: -

Age: -

 FBXW7 0.965 - - - 0.965 - - Mlig455_019217 {REF} {Length: 2707} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=132.2]; F-box-like [PF12937.9, score=48.0]; F-box domain [PF00646.35, score=32.2]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=23.4]; Nucleoporin Nup120/160 [PF11715.10, score=22.5]} {Human: ENSG00000109670, FBXW7, F-box and WD repeat domain containing 7, [RH, Score=430, Expect=5e-143]} {Mouse: ENSMUSG00000028086, Fbxw7, F-box and WD-40 domain protein 7, [RH, Score=429, Expect=8e-143]} {Dmel: FBgn0041171, ago, archipelago, [RH, Score=415, Expect=2e-131]} {Celegans: WBGene00004767, sel-10, F-box/WD repeat-containing protein sel-10, [RH, Score=310, Expect=3e-98]} {Smed: dd_Smed_v6_8211_0_1, dd_Smed_v6_8211_0_1, [RH, Score=280, Expect=1e-88]} {RNA1509_19180, RNA1509_52969} {RNA1310_4381, RNA1509_19180, RNA1509_52969} {RNA1509_19180, RNA1509_52969, RNA815_6050}
6. MligTC455_07912 8 0.16 Mlig455_012891

Neo: -

Age: -

 0.963 - - - - 0.963 - Mlig455_012891 {REF} {Length: 778} {NoTransDecoderORF} {RNA1509_50843} {RNA1310_95196} {RNA815_52267}
7. MligTC455_40376 46 0.95 Mlig455_019751, Mlig455_019761

Neo: -

Age: -

 HDAC4 0.963 - - - 0.963 - -

Mlig455_019751 {REF} {Length: 2920} {TRANSSPLICED} {Pfam: Histone deacetylase domain [PF00850.21, score=283.9]} {Human: ENSG00000068024, HDAC4, histone deacetylase 4, [RH, Score=420, Expect=2e-130]; ENSG00000061273, HDAC7, histone deacetylase 7, [RH, Score=407, Expect=6e-127]; ENSG00000048052, HDAC9, histone deacetylase 9, [RH, Score=405, Expect=3e-125]} {Mouse: ENSMUSG00000026313, Hdac4, histone deacetylase 4, [RH, Score=416, Expect=5e-129]; ENSMUSG00000022475, Hdac7, histone deacetylase 7, [RH, Score=414, Expect=2e-130]; ENSMUSG00000004698, Hdac9, histone deacetylase 9, [RH, Score=398, Expect=5e-123]; ENSMUSG00000008855, Hdac5, histone deacetylase 5, [RH, Score=397, Expect=6e-122]} {Dmel: FBgn0041210, HDAC4, Histone deacetylase 4, [RH, Score=395, Expect=5e-120]} {Celegans: WBGene00001837, hda-4, Histone deacetylase 4, [RH, Score=387, Expect=1e-120]} {Smed: dd_Smed_v6_9385_0_1, dd_Smed_v6_9385_0_1, [Score=436, Expect=2e-139]} {RNA1509_17700} {RNA1310_5730.1} {RNA815_4623}

Mlig455_019761 {REF} {Length: 3317} {Pfam: Histone deacetylase domain [PF00850.21, score=281.0]} {Human: ENSG00000068024, HDAC4, histone deacetylase 4, [RH, Score=423, Expect=3e-131]; ENSG00000061273, HDAC7, histone deacetylase 7, [RH, Score=409, Expect=4e-127]; ENSG00000048052, HDAC9, histone deacetylase 9, [RH, Score=407, Expect=9e-126]} {Mouse: ENSMUSG00000026313, Hdac4, histone deacetylase 4, [RH, Score=419, Expect=1e-129]; ENSMUSG00000022475, Hdac7, histone deacetylase 7, [RH, Score=416, Expect=2e-130]; ENSMUSG00000004698, Hdac9, histone deacetylase 9, [RH, Score=402, Expect=2e-123]; ENSMUSG00000008855, Hdac5, histone deacetylase 5, [RH, Score=399, Expect=6e-122]} {Dmel: FBgn0041210, HDAC4, Histone deacetylase 4, [RH, Score=397, Expect=2e-120]} {Celegans: WBGene00001837, hda-4, Histone deacetylase 4, [RH, Score=387, Expect=3e-120]} {Smed: dd_Smed_v6_9385_0_1, dd_Smed_v6_9385_0_1, [Score=436, Expect=2e-139]} {RNA1509_17700} {RNA1310_5730.1} {RNA815_4623}
8. MligTC455_02590 19 0.4 Mlig455_027316

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.490

 MX2 0.962 - - - - 0.962 - Mlig455_027316 {REF} {Length: 3400} {Pfam: Dynamin central region [PF01031.22, score=151.8]; Family with sequence similarity 184, A and B [PF15665.7, score=21.2]} {Human: ENSG00000183486, MX2, MX dynamin like GTPase 2, [Score=124, Expect=6e-31]} {Mouse: ENSMUSG00000023341, Mx2, MX dynamin-like GTPase 2, [Score=121, Expect=3e-30]} {RNA1509_19894} {RNA1310_7243} {RNA815_3194}
9. MligTC455_13853 28 0.57 Mlig455_043964, Mlig455_044044

Neo: -

Age: -

 YTHDC1 0.961 - - - - 0.961 -

Mlig455_043964 {REF} {Length: 1903} {TRANSSPLICED} {Pfam: YT521-B-like domain [PF04146.17, score=140.7]} {Human: ENSG00000275272, YTHDC1, YTH domain containing 1, [RH, Score=214, Expect=9e-61]; ENSG00000083896, YTHDC1, YTH domain containing 1, [RH, Score=214, Expect=9e-61]} {Mouse: ENSMUSG00000035851, Ythdc1, YTH domain containing 1, [RH, Score=216, Expect=7e-63]} {Dmel: FBgn0027616, YT521-B, [RH, Score=206, Expect=7e-58]} {Smed: dd_Smed_v6_3491_0_1, dd_Smed_v6_3491_0_1, [RH, Score=230, Expect=4e-70]} {RNA1509_38337} {RNA1310_14878, RNA1509_38337} {RNA1509_38337, RNA815_14051}

Mlig455_044044 {REF} {Length: 1903} {TRANSSPLICED} {Pfam: YT521-B-like domain [PF04146.17, score=140.7]} {Human: ENSG00000275272, YTHDC1, YTH domain containing 1, [RH, Score=214, Expect=9e-61]; ENSG00000083896, YTHDC1, YTH domain containing 1, [RH, Score=214, Expect=9e-61]} {Mouse: ENSMUSG00000035851, Ythdc1, YTH domain containing 1, [RH, Score=216, Expect=7e-63]} {Dmel: FBgn0027616, YT521-B, [RH, Score=206, Expect=7e-58]} {Smed: dd_Smed_v6_3491_0_1, dd_Smed_v6_3491_0_1, [RH, Score=230, Expect=4e-70]} {RNA1509_17852, RNA1509_29578, RNA1509_38337, RNA1509_58381} {RNA1310_14878, RNA1509_17852, RNA1509_29578, RNA1509_58381} {RNA1509_17852, RNA1509_29578, RNA1509_58381, RNA815_14051}
10. MligTC455_24295 106 2.2 Mlig455_004579

Neo: -

Age: Down-Up-Up

 0.96 - - 0.960 - - - Mlig455_004579 {REF} {Length: 2376} {TRANSSPLICED} {Pfam: Protein of unknown function, DUF547 [PF04784.16, score=122.1]; Glutaredoxin [PF00462.26, score=24.9]} {Celegans: WBGene00012869, Y45F10A.7, [RH, Score=189, Expect=2e-53]} {RNA1310_53091} {RNA815_39737}
11. MligTC455_20217 498 10.38 Mlig455_048847

Neo: Irradiation

Age: Down-Up-Up, logFC(26M/2M)=0.441

Region-enriched R5: 2.582/0.00025

 LANCL2 0.959 - - - - 0.959 - Mlig455_048847 {REF} {Length: 1639} {TRANSSPLICED} {Pfam: Lanthionine synthetase C-like protein [PF05147.15, score=188.5]} {Human: ENSG00000132434, LANCL2, LanC like 2, [RH, Score=241, Expect=4e-74]; ENSG00000115365, LANCL1, LanC like 1, [RH, Score=240, Expect=1e-74]} {Mouse: ENSMUSG00000062190, Lancl2, LanC (bacterial lantibiotic synthetase component C)-like 2, [RH, Score=238, Expect=2e-73]; ENSMUSG00000026000, Lancl1, LanC (bacterial lantibiotic synthetase component C)-like 1, [RH, Score=236, Expect=6e-73]} {Dmel: FBgn0027498, CG2061, [Score=177, Expect=2e-50]} {Smed: dd_Smed_v6_10666_0_1, dd_Smed_v6_10666_0_1, [RH, Score=213, Expect=1e-64]} {RNA1509_19335} {RNA1310_18268, RNA1509_19335} {RNA1509_19335, RNA815_7120}
12. MligTC455_22066 131 2.72 Mlig455_004242, Mlig455_061674

Neo: -

Age: -

 0.959 - - 0.959 - - -

Mlig455_004242 {REF} {Length: 340} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_44182} {RNA1310_9137.1} {RNA815_26754.1}

Mlig455_061674 {REF} {Length: 698} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_48080} {RNA1310_52699} {RNA815_26754.1}
13. MligTC455_14833 9 0.19 Mlig455_047056

Neo: -

Age: -

 0.958 - - - 0.958 - - Mlig455_047056 {REF} {Length: 596} {NoTransDecoderORF}
14. MligTC455_26939 72 1.49 Mlig455_033291

Neo: -

Age: -

 0.958 - - - 0.958 - - Mlig455_033291 {REF} {Length: 6212} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=121.0]} {Smed: dd_Smed_v6_16441_0_1, dd_Smed_v6_16441_0_1, [Score=71.6, Expect=4e-13]} {RNA1509_16377} {RNA1310_5710.1} {RNA815_6291.1}
15. MligTC455_06310 10 0.2 Mlig455_032477

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_032477 {REF} {Length: 1757} {NoTransDecoderORF} {RNA1509_29098} {RNA1310_30738} {RNA815_12857}
16. MligTC455_47975 31 0.64 Mlig455_018682, Mlig455_043427

Neo: -

Age: Up-Down-Down

 ISL1 0.955 - - - 0.955 - -

Mlig455_018682 {REF} {Length: 3387} {Pfam: LIM domain [PF00412.24, score=95.5]; Homeodomain [PF00046.31, score=55.3]; Homeobox KN domain [PF05920.13, score=23.7]} {Human: ENSG00000016082, ISL1, ISL LIM homeobox 1, [Score=202, Expect=6e-60]} {Mouse: ENSMUSG00000042258, Isl1, ISL1 transcription factor, LIM/homeodomain, [Score=202, Expect=4e-60]} {Dmel: FBgn0003896, tup, tailup, [RH, Score=178, Expect=3e-49]} {Celegans: WBGene00002989, lim-7, CeLIM-7; LIM domain family, [RH, Score=228, Expect=5e-69]} {Smed: dd_Smed_v6_8820_0_1, dd_Smed_v6_8820_0_1, [Score=320, Expect=1e-103]} {RNA1310_20628} {RNA815_37694}

Mlig455_043427 {REF} {Length: 3365} {Pfam: LIM domain [PF00412.24, score=77.4]; Homeodomain [PF00046.31, score=53.3]; Homeobox KN domain [PF05920.13, score=21.8]} {Human: ENSG00000016082, ISL1, ISL LIM homeobox 1, [Score=167, Expect=2e-46]} {Mouse: ENSMUSG00000042258, Isl1, ISL1 transcription factor, LIM/homeodomain, [Score=167, Expect=1e-46]; ENSMUSG00000032318, Isl2, insulin related protein 2 (islet 2), [Score=160, Expect=4e-44]} {Dmel: FBgn0003896, tup, tailup, [Score=144, Expect=1e-37]} {Celegans: WBGene00002989, lim-7, CeLIM-7; LIM domain family, [Score=204, Expect=6e-60]} {Smed: dd_Smed_v6_8820_0_1, dd_Smed_v6_8820_0_1, [Score=274, Expect=7e-86]} {RNA1310_20628} {RNA815_37694}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA