M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_39729

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_39729 55 1.14 Mlig455_027739, Mlig455_027953

Neo: -

Age: -

Region-enriched R4: 3.283/0.04152

 SVOP

Mlig455_027739 {REF} {Length: 2872} {Pfam: Major Facilitator Superfamily [PF07690.18, score=91.1]; Sugar (and other) transporter [PF00083.26, score=83.3]} {Human: ENSG00000166111, SVOP, SV2 related protein, [RH, Score=364, Expect=2e-119]} {Mouse: ENSMUSG00000042078, Svop, SV2 related protein, [RH, Score=353, Expect=2e-115]} {Dmel: FBgn0034956, CG4324, [RH, Score=315, Expect=1e-101]} {Celegans: WBGene00014021, svop-1, Putative transporter svop-1, [RH, Score=352, Expect=1e-115]} {Smed: dd_Smed_v6_3645_0_1, dd_Smed_v6_3645_0_1, [Score=434, Expect=4e-148]} {RNA1310_29004} {RNA815_5293}

Mlig455_027953 {REF} {Length: 2705} {Pfam: Major Facilitator Superfamily [PF07690.18, score=92.8]; Sugar (and other) transporter [PF00083.26, score=84.3]} {Human: ENSG00000166111, SVOP, SV2 related protein, [RH, Score=367, Expect=2e-120]} {Mouse: ENSMUSG00000042078, Svop, SV2 related protein, [Score=356, Expect=2e-116]} {Dmel: FBgn0034956, CG4324, [RH, Score=312, Expect=1e-100]} {Celegans: WBGene00014021, svop-1, Putative transporter svop-1, [Score=353, Expect=4e-116]} {Smed: dd_Smed_v6_3645_0_1, dd_Smed_v6_3645_0_1, [Score=438, Expect=1e-149]} {RNA1310_29004} {RNA815_5293}

Cumulative graph for MligTC455_39729

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.305 1.367 0.99973 1.00000
RegionR2 2.363 1.367 0.07386 0.33188
RegionR3 -0.134 1.367 0.67676 1.00000
RegionR4 3.283 1.367 0.00594 0.04152
RegionR5 -1.604 1.367 0.99973 1.00000
RegionR6 2.002 1.367 0.12095 0.63381
RegionR7 -1.746 1.367 0.99982 1.00000
RegionR8 -1.86 1.367 0.99983 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.12 1.367 1.00000 1.00000
RegenerationR2 -1.082 1.367 0.32436 0.76230
RegenerationR3 2.276 1.367 0.11454 0.52838
RegenerationR4 0.466 1.367 0.62546 0.92200
RegenerationR5 2.932 1.367 0.02673 0.27786
RegenerationR6 2.621 1.367 0.01348 0.14301
RegenerationBL 3.332 1.367 0.09317 0.35865
RegenerationTP 5.842 1.367 0.00608 0.13092


Genes with expression patterns similar to MligTC455_39729

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_39729 55 1.14 Mlig455_027739, Mlig455_027953

Neo: -

Age: -

Region-enriched R4: 3.283/0.04152

 SVOP 5 - 1.000 1.000 1.000 1.000 1.000

Mlig455_027739 {REF} {Length: 2872} {Pfam: Major Facilitator Superfamily [PF07690.18, score=91.1]; Sugar (and other) transporter [PF00083.26, score=83.3]} {Human: ENSG00000166111, SVOP, SV2 related protein, [RH, Score=364, Expect=2e-119]} {Mouse: ENSMUSG00000042078, Svop, SV2 related protein, [RH, Score=353, Expect=2e-115]} {Dmel: FBgn0034956, CG4324, [RH, Score=315, Expect=1e-101]} {Celegans: WBGene00014021, svop-1, Putative transporter svop-1, [RH, Score=352, Expect=1e-115]} {Smed: dd_Smed_v6_3645_0_1, dd_Smed_v6_3645_0_1, [Score=434, Expect=4e-148]} {RNA1310_29004} {RNA815_5293}

Mlig455_027953 {REF} {Length: 2705} {Pfam: Major Facilitator Superfamily [PF07690.18, score=92.8]; Sugar (and other) transporter [PF00083.26, score=84.3]} {Human: ENSG00000166111, SVOP, SV2 related protein, [RH, Score=367, Expect=2e-120]} {Mouse: ENSMUSG00000042078, Svop, SV2 related protein, [Score=356, Expect=2e-116]} {Dmel: FBgn0034956, CG4324, [RH, Score=312, Expect=1e-100]} {Celegans: WBGene00014021, svop-1, Putative transporter svop-1, [Score=353, Expect=4e-116]} {Smed: dd_Smed_v6_3645_0_1, dd_Smed_v6_3645_0_1, [Score=438, Expect=1e-149]} {RNA1310_29004} {RNA815_5293}
2. MligTC455_38261 206 4.29 Mlig455_011310, Mlig455_011399

Neo: -

Age: -

 1.824 - - - 0.856 - 0.968

Mlig455_011310 {REF} {Length: 3015} {Pfam: Myb-like DNA-binding domain [PF00249.33, score=22.6]; Myb-like DNA-binding domain [PF13921.8, score=22.4]} {Smed: dd_Smed_v6_10162_0_1, dd_Smed_v6_10162_0_1, [RH, Score=52.0, Expect=4e-07]} {RNA1509_22660} {RNA1310_12928.1} {RNA815_6845.1}

Mlig455_011399 {REF} {Length: 3506} {Pfam: Myb-like DNA-binding domain [PF00249.33, score=23.0]; Myb-like DNA-binding domain [PF13921.8, score=22.8]} {Smed: dd_Smed_v6_10162_0_1, dd_Smed_v6_10162_0_1, [Score=51.2, Expect=7e-07]} {RNA1509_22660} {RNA1310_12928.1, RNA1509_22660} {RNA1509_22660, RNA815_18634}
3. MligTC455_47673 654 13.62 Mlig455_004241, Mlig455_063137

Neo: -

Age: -

Region-enriched R6: 7.222/0.00000

 PI16 1.79 - - - 0.978 - 0.812

Mlig455_004241 {REF} {Length: 1594} {Pfam: Cysteine-rich secretory protein family [PF00188.28, score=51.9]} {Human: ENSG00000164530, PI16, peptidase inhibitor 16, [Score=81.3, Expect=4e-16]} {Mouse: ENSMUSG00000025776, Crispld1, cysteine-rich secretory protein LCCL domain containing 1, [Score=82.4, Expect=2e-16]; ENSMUSG00000024011, Pi16, peptidase inhibitor 16, [Score=80.1, Expect=2e-16]} {Celegans: WBGene00009891, scl-10, SCP-Like extracellular protein, [Score=53.5, Expect=4e-08]} {Smed: dd_Smed_v6_2021_0_1, dd_Smed_v6_2021_0_1, [Score=122, Expect=6e-30]} {RNA1509_44182} {RNA1310_9137.1} {RNA815_8185}

Mlig455_063137 {REF} {Length: 1725} {Pfam: Cysteine-rich secretory protein family [PF00188.28, score=52.1]} {Human: ENSG00000164530, PI16, peptidase inhibitor 16, [Score=82.4, Expect=2e-16]} {Mouse: ENSMUSG00000025776, Crispld1, cysteine-rich secretory protein LCCL domain containing 1, [Score=83.6, Expect=8e-17]; ENSMUSG00000024011, Pi16, peptidase inhibitor 16, [Score=81.3, Expect=4e-17]} {Celegans: WBGene00009891, scl-10, SCP-Like extracellular protein, [Score=53.5, Expect=5e-08]} {Smed: dd_Smed_v6_2021_0_1, dd_Smed_v6_2021_0_1, [Score=124, Expect=1e-30]} {RNA1509_44182} {RNA1310_9137.1, RNA1509_44182} {RNA1509_44182, RNA815_8185}
4. MligTC455_24956 800 16.67 Mlig455_011665

Neo: -

Age: Up-Down-Up

Region-enriched R8: 2.311/0.04035
Region-enriched R7: 2.063/0.03140
Region-enriched R6: 1.977/0.01275

Regeneration-downregulated BL: -1.784

Regeneration-depleted BL: -1.784

 1.704 - - - 0.959 - 0.745 Mlig455_011665 {REF} {Length: 1408} {RNA1310_24708.1} {RNA815_12886}
5. MligTC455_28497 107 2.23 Mlig455_062454

Neo: -

Age: -

Region-enriched R7: 3.384/0.00125
Region-enriched R6: 2.349/0.02384

 0.98 - - - 0.980 - - Mlig455_062454 {REF} {Length: 4513} {Pfam: Zinc-binding domain [PF13695.8, score=70.3]} {Smed: dd_Smed_v6_4477_0_1, dd_Smed_v6_4477_0_1, [Score=76.3, Expect=3e-15]} {RNA1509_52092} {RNA1310_11003.1} {RNA815_6825.1}
6. MligTC455_50956 889 18.51 Mlig455_045039

Neo: -

Age: Down-Down-Up

 0.975 - - - 0.975 - - Mlig455_045039 {REF} {Length: 1189} {RNA1509_10819, RNA1509_13685, RNA1509_55859} {RNA1310_30137, RNA1509_10819, RNA1509_13685, RNA1509_55859} {RNA1509_10819, RNA1509_13685, RNA1509_55859, RNA815_14527}
7. MligTC455_22282 66 1.37 Mlig455_058452

Neo: -

Age: -

 0.973 - - 0.973 - - - Mlig455_058452 {REF} {Length: 5087} {TRANSSPLICED} {Smed: dd_Smed_v6_4268_0_2, dd_Smed_v6_4268_0_2, [Score=72.8, Expect=2e-15]} {RNA1509_21983} {RNA1310_15855} {RNA815_31364}
8. MligTC455_00365 18 0.37 Mlig455_030202

Neo: -

Age: -

 0.968 - - - 0.968 - - Mlig455_030202 {REF} {Length: 397} {NoTransDecoderORF} {RNA1310_64969}
9. MligTC455_15740 16 0.33 Mlig455_035153

Neo: -

Age: -

Region-enriched R5: 2.633/0.00195

Regeneration-downregulated R2: -2.853

Regeneration-depleted R2: -2.853

 0.968 - - - 0.968 - - Mlig455_035153 {REF} {Length: 1128} {Pfam: WSC domain [PF01822.21, score=54.4]; PAN domain [PF00024.28, score=25.4]} {Mouse: ENSMUSG00000040680, Kremen2, kringle containing transmembrane protein 2, [Score=52.8, Expect=1e-07]} {Dmel: FBgn0015360, oxt, peptide O-xylosyltransferase, [Score=55.1, Expect=1e-08]} {RNA1310_29927} {RNA815_55032}
10. MligTC455_19701 63 1.32 Mlig455_039776

Neo: -

Age: -

Region-enriched R4: 4.356/0.04826

 0.966 - - 0.966 - - - Mlig455_039776 {REF} {Length: 884} {NoTransDecoderORF} {RNA1310_39282} {RNA815_40382}
11. MligTC455_56193 10 0.2 Mlig455_010665

Neo: -

Age: -

 0.966 - - - 0.966 - - Mlig455_010665 {REF} {Length: 258} {NoTransDecoderORF}
12. MligTC455_20963 45 0.95 Mlig455_003762

Neo: -

Age: -

 0.964 - - 0.964 - - - Mlig455_003762 {REF} {Length: 1917} {NoTransDecoderORF} {RNA1509_15862} {RNA1310_73168} {RNA815_32666}
13. MligTC455_27737 1336 27.84 Mlig455_056926

Neo: -

Age: logFC(26M/2M)=-0.801

Region-specific R6: 7.000

Region-enriched R6: 7.332/0.00000

 0.964 - - - 0.964 - - Mlig455_056926 {REF} {Length: 233} {NoTransDecoderORF} {RNA1509_11291} {RNA1310_76104.1} {RNA815_39096}
14. MligTC455_10214 30 0.61 Mlig455_011448

Neo: -

Age: -

 0.962 - - - - - 0.962 Mlig455_011448 {REF} {Length: 1852} {Smed: dd_Smed_v6_13791_0_1, dd_Smed_v6_13791_0_1, [Score=98.2, Expect=1e-24]} {RNA1509_7013} {RNA1310_122132} {RNA815_998.1}
15. MligTC455_11519 52 1.09 Mlig455_060983

Neo: Int S/G2/M

Age: -

 0.962 - - 0.962 - - - Mlig455_060983 {REF} {Length: 4253} {RNA1509_22299} {RNA1310_3332} {RNA815_37095}
16. MligTC455_15133 269 5.61 Mlig455_006453

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.922

Region-enriched R3: 2.595/0.01395

 0.961 - - 0.961 - - - Mlig455_006453 {REF} {Length: 681} {RNA1509_17881} {RNA1310_58107, RNA1509_17881} {RNA1509_17881, RNA815_29431}
17. MligTC455_09684 20 0.41 Mlig455_021356

Neo: -

Age: -

 0.954 - - 0.954 - - - Mlig455_021356 {REF} {Length: 328} {NoTransDecoderORF} {RNA1310_113673}
18. MligTC455_20019 41 0.86 Mlig455_048024

Neo: -

Age: -

 0.954 - - 0.954 - - - Mlig455_048024 {REF} {Length: 549} {NoTransDecoderORF} {RNA1310_57910} {RNA815_64707}
19. MligTC455_13884 50 1.04 Mlig455_038162, Mlig455_038210

Neo: -

Age: -

Region-enriched R4: 6.524/0.00005

 0.953 - - - 0.953 - -

Mlig455_038162 {REF} {Length: 1003} {RNA1310_47543} {RNA815_24825}

Mlig455_038210 {REF} {Length: 1009} {RNA1310_47543} {RNA815_24825}
20. MligTC455_37503 26 0.53 Mlig455_018948, Mlig455_048131

Neo: -

Age: logFC(26M/2M)=0.910

 LRRC4C 0.952 - - 0.952 - - -

Mlig455_018948 {REF} {Length: 2745} {Pfam: Leucine rich repeat [PF13855.8, score=55.9]; Leucine Rich repeats (2 copies) [PF12799.9, score=45.9]} {Human: ENSG00000148948, LRRC4C, leucine rich repeat containing 4C, [Score=61.6, Expect=3e-09]} {Mouse: ENSMUSG00000050587, Lrrc4c, leucine rich repeat containing 4C, [Score=61.2, Expect=2e-09]} {Dmel: FBgn0032484, kek4, kekkon4, [Score=58.2, Expect=1e-08]} {Celegans: WBGene00002282, let-4, Leucine-rich repeat-containing protein let-4, [Score=55.1, Expect=1e-07]} {RNA1310_28159} {RNA815_24103}

Mlig455_048131 {REF} {Length: 1612} {Pfam: Leucine Rich repeats (2 copies) [PF12799.9, score=29.4]; Leucine rich repeat [PF13855.8, score=26.7]} {RNA1310_74114} {RNA815_24103}
21. MligTC455_01013 5 0.11 Mlig455_052006

Neo: -

Age: -

 0.951 - - 0.951 - - - Mlig455_052006 {REF} {Length: 339} {NoTransDecoderORF} {RNA1509_51930} {RNA1310_94351} {RNA815_9662}
22. MligTC455_18525 187 3.9 Mlig455_011761, Mlig455_047975, Mlig455_066356, Mlig455_066357

Neo: -

Age: -

 HAL 0.951 - - - 0.951 - -

Mlig455_011761 {REF} {Length: 2777} {Pfam: Aromatic amino acid lyase [PF00221.21, score=630.6]} {Human: ENSG00000084110, HAL, histidine ammonia-lyase, [RH, Score=834, Expect=0.0]} {Mouse: ENSMUSG00000020017, Hal, histidine ammonia lyase, [RH, Score=839, Expect=0.0]} {Celegans: WBGene00009813, haly-1, Histidine ammonia-lyase, [RH, Score=654, Expect=0.0]} {Smed: dd_Smed_v6_2219_0_1, dd_Smed_v6_2219_0_1, [RH, Score=455, Expect=2e-156]} {RNA1509_12711} {RNA1310_10590} {RNA815_24023}

Mlig455_047975 {REF} {Length: 3006} {Pfam: Aromatic amino acid lyase [PF00221.21, score=630.6]} {Human: ENSG00000084110, HAL, histidine ammonia-lyase, [RH, Score=834, Expect=0.0]} {Mouse: ENSMUSG00000020017, Hal, histidine ammonia lyase, [RH, Score=839, Expect=0.0]} {Celegans: WBGene00009813, haly-1, Histidine ammonia-lyase, [RH, Score=654, Expect=0.0]} {Smed: dd_Smed_v6_2219_0_1, dd_Smed_v6_2219_0_1, [RH, Score=455, Expect=2e-156]} {RNA1509_12711} {RNA1310_10590, RNA1509_12711} {RNA1509_12711, RNA815_24023}

Mlig455_066356 {REF} {Length: 262} {Pfam: Aromatic amino acid lyase [PF00221.21, score=93.1]} {Human: ENSG00000084110, HAL, histidine ammonia-lyase, [Score=119, Expect=4e-33]} {Mouse: ENSMUSG00000020017, Hal, histidine ammonia lyase, [Score=122, Expect=4e-34]} {Celegans: WBGene00009813, haly-1, Histidine ammonia-lyase, [Score=102, Expect=2e-27]} {Smed: dd_Smed_v6_2219_0_1, dd_Smed_v6_2219_0_1, [Score=133, Expect=1e-39]} {RNA1509_25146} {RNA1310_10590} {RNA815_24023}

Mlig455_066357 {REF} {Length: 1013} {Pfam: Aromatic amino acid lyase [PF00221.21, score=49.5]} {Human: ENSG00000084110, HAL, histidine ammonia-lyase, [Score=125, Expect=3e-34]} {Mouse: ENSMUSG00000020017, Hal, histidine ammonia lyase, [Score=124, Expect=3e-33]} {Celegans: WBGene00009813, haly-1, Histidine ammonia-lyase, [Score=104, Expect=1e-26]} {Smed: dd_Smed_v6_2219_0_1, dd_Smed_v6_2219_0_1, [Score=106, Expect=3e-28]} {RNA1509_25146} {RNA1310_10590} {RNA815_24023}
23. MligTC455_27238 271 5.64 Mlig455_012121, Mlig455_029005

Neo: -

Age: -

Region-enriched R6: 2.213/0.04168

 CPQ 0.951 - - - 0.951 - -

Mlig455_012121 {REF} {Length: 7558} {Pfam: Peptidase family M28 [PF04389.19, score=72.0]; Peptidase family M20/M25/M40 [PF01546.30, score=24.4]} {Human: ENSG00000104324, CPQ, carboxypeptidase Q, [Score=273, Expect=3e-86]} {Mouse: ENSMUSG00000039007, Cpq, carboxypeptidase Q, [Score=288, Expect=4e-92]} {RNA1509_28127, RNA1509_50076} {RNA1310_1765, RNA1509_50076} {RNA1509_50076, RNA815_2484.1}

Mlig455_029005 {REF} {Length: 2282} {Pfam: Peptidase family M28 [PF04389.19, score=72.0]; Peptidase family M20/M25/M40 [PF01546.30, score=24.3]} {Human: ENSG00000104324, CPQ, carboxypeptidase Q, [Score=270, Expect=6e-85]} {Mouse: ENSMUSG00000039007, Cpq, carboxypeptidase Q, [Score=285, Expect=5e-91]} {RNA1509_50076} {RNA1310_21166} {RNA815_34913}
24. MligTC455_30913 19 0.39 Mlig455_034474, Mlig455_042925, Mlig455_042926

Neo: -

Age: -

 0.951 - - 0.951 - - -

Mlig455_034474 {REF} {Length: 671} {NoTransDecoderORF} {RNA1509_55508} {RNA1310_19597} {RNA815_31859}

Mlig455_042925 {REF} {Length: 2534} {RNA1509_55508} {RNA1310_19597} {RNA815_31859}

Mlig455_042926 {REF} {Length: 16695} {RNA1509_55508} {RNA1310_19597} {RNA815_31859}
25. MligTC455_45390 15 0.32 Mlig455_020094

Neo: -

Age: -

 0.95 - - - 0.950 - - Mlig455_020094 {REF} {Length: 597} {NoTransDecoderORF} {RNA1509_14556} {RNA1310_104847} {RNA815_10965}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA