M. lignano Tomo-Seq
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Results for MligTC455_39733

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_39733 216 4.51 Mlig455_044626, Mlig455_044683

Neo: -

Age: -

 SLC29A3

Mlig455_044626 {REF} {Length: 2860} {TRANSSPLICED} {Pfam: Nucleoside transporter [PF01733.20, score=178.3]} {Human: ENSG00000198246, SLC29A3, solute carrier family 29 member 3, [RH, Score=219, Expect=2e-65]} {Mouse: ENSMUSG00000020100, Slc29a3, solute carrier family 29 (nucleoside transporters), member 3, [RH, Score=198, Expect=2e-57]} {Dmel: FBgn0031250, Ent1, Equilibrative nucleoside transporter 1, [RH, Score=197, Expect=2e-57]} {Celegans: WBGene00009499, ent-6, Equilibrative Nucleoside Transporter, [RH, Score=117, Expect=2e-28]} {Smed: dd_Smed_v6_6848_0_1, dd_Smed_v6_6848_0_1, [RH, Score=201, Expect=1e-59]} {RNA1509_50210} {RNA1310_9129.1} {RNA815_17762}

Mlig455_044683 {REF} {Length: 2860} {TRANSSPLICED} {Pfam: Nucleoside transporter [PF01733.20, score=178.3]} {Human: ENSG00000198246, SLC29A3, solute carrier family 29 member 3, [RH, Score=219, Expect=2e-65]} {Mouse: ENSMUSG00000020100, Slc29a3, solute carrier family 29 (nucleoside transporters), member 3, [RH, Score=198, Expect=2e-57]} {Dmel: FBgn0031250, Ent1, Equilibrative nucleoside transporter 1, [RH, Score=197, Expect=2e-57]} {Celegans: WBGene00009499, ent-6, Equilibrative Nucleoside Transporter, [RH, Score=117, Expect=2e-28]} {Smed: dd_Smed_v6_6848_0_1, dd_Smed_v6_6848_0_1, [RH, Score=201, Expect=1e-59]} {RNA1509_50210} {RNA1310_9129.1} {RNA815_17762}

Cumulative graph for MligTC455_39733

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -4.975 2.839 0.30232 0.95200
RegionR2 0.996 2.839 0.39541 0.78944
RegionR3 -0.211 2.839 0.91156 1.00000
RegionR4 1.869 2.839 0.08566 0.27719
RegionR5 0.603 2.839 0.54350 0.90585
RegionR6 1.452 2.839 0.11818 0.62694
RegionR7 0.468 2.839 0.67072 1.00000
RegionR8 -0.203 2.839 0.91337 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.012 2.839 0.99999 1.00000
RegenerationR2 -0.271 2.839 0.69915 0.95604
RegenerationR3 1.265 2.839 0.13759 0.56277
RegenerationR4 -0.756 2.839 0.38208 0.80252
RegenerationR5 0.234 2.839 0.76050 0.97584
RegenerationR6 0.223 2.839 0.77208 0.96333
RegenerationBL 0.242 2.839 0.80182 1.00000
RegenerationTP 0.486 2.839 0.64827 0.98828


Genes with expression patterns similar to MligTC455_39733

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_39733 216 4.51 Mlig455_044626, Mlig455_044683

Neo: -

Age: -

 SLC29A3 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_044626 {REF} {Length: 2860} {TRANSSPLICED} {Pfam: Nucleoside transporter [PF01733.20, score=178.3]} {Human: ENSG00000198246, SLC29A3, solute carrier family 29 member 3, [RH, Score=219, Expect=2e-65]} {Mouse: ENSMUSG00000020100, Slc29a3, solute carrier family 29 (nucleoside transporters), member 3, [RH, Score=198, Expect=2e-57]} {Dmel: FBgn0031250, Ent1, Equilibrative nucleoside transporter 1, [RH, Score=197, Expect=2e-57]} {Celegans: WBGene00009499, ent-6, Equilibrative Nucleoside Transporter, [RH, Score=117, Expect=2e-28]} {Smed: dd_Smed_v6_6848_0_1, dd_Smed_v6_6848_0_1, [RH, Score=201, Expect=1e-59]} {RNA1509_50210} {RNA1310_9129.1} {RNA815_17762}

Mlig455_044683 {REF} {Length: 2860} {TRANSSPLICED} {Pfam: Nucleoside transporter [PF01733.20, score=178.3]} {Human: ENSG00000198246, SLC29A3, solute carrier family 29 member 3, [RH, Score=219, Expect=2e-65]} {Mouse: ENSMUSG00000020100, Slc29a3, solute carrier family 29 (nucleoside transporters), member 3, [RH, Score=198, Expect=2e-57]} {Dmel: FBgn0031250, Ent1, Equilibrative nucleoside transporter 1, [RH, Score=197, Expect=2e-57]} {Celegans: WBGene00009499, ent-6, Equilibrative Nucleoside Transporter, [RH, Score=117, Expect=2e-28]} {Smed: dd_Smed_v6_6848_0_1, dd_Smed_v6_6848_0_1, [RH, Score=201, Expect=1e-59]} {RNA1509_50210} {RNA1310_9129.1} {RNA815_17762}
2. MligTC455_48525 996 20.75 Mlig455_038137, Mlig455_039802

Neo: -

Age: -

 SLIT3 1.764 - - 0.953 - - 0.811

Mlig455_038137 {REF} {Length: 3401} {Pfam: Leucine rich repeat [PF13855.8, score=61.1]; Leucine Rich repeats (2 copies) [PF12799.9, score=35.3]; Leucine Rich Repeat [PF00560.35, score=21.6]} {Human: ENSG00000184347, SLIT3, slit guidance ligand 3, [Score=67.8, Expect=4e-11]; ENSG00000145147, SLIT2, slit guidance ligand 2, [Score=65.5, Expect=2e-10]} {Mouse: ENSMUSG00000056427, Slit3, slit guidance ligand 3, [Score=72.0, Expect=2e-12]} {Dmel: FBgn0259677, CG42346, [Score=65.1, Expect=2e-10]} {Celegans: WBGene00011971, lron-9, ELRR (Extracellular Leucine-Rich Repeat) ONly, [Score=49.3, Expect=7e-06]} {Smed: dd_Smed_v6_10042_0_1, dd_Smed_v6_10042_0_1, [RH, Score=131, Expect=2e-32]} {RNA1509_30754} {RNA1310_13244.1} {RNA815_2936}

Mlig455_039802 {REF} {Length: 3122} {Pfam: Leucine rich repeat [PF13855.8, score=61.1]; Leucine Rich repeats (2 copies) [PF12799.9, score=35.4]; Leucine Rich Repeat [PF00560.35, score=21.7]} {Human: ENSG00000184347, SLIT3, slit guidance ligand 3, [Score=68.2, Expect=3e-11]; ENSG00000145147, SLIT2, slit guidance ligand 2, [Score=65.5, Expect=2e-10]} {Mouse: ENSMUSG00000056427, Slit3, slit guidance ligand 3, [Score=72.0, Expect=2e-12]} {Dmel: FBgn0259677, CG42346, [Score=65.1, Expect=1e-10]} {Celegans: WBGene00011971, lron-9, ELRR (Extracellular Leucine-Rich Repeat) ONly, [Score=49.3, Expect=6e-06]} {Smed: dd_Smed_v6_10042_0_1, dd_Smed_v6_10042_0_1, [RH, Score=131, Expect=2e-32]} {RNA1509_21146, RNA1509_30754, RNA1509_36025} {RNA1310_13244.1, RNA1509_21146, RNA1509_30754, RNA1509_36025} {RNA1509_21146, RNA1509_30754, RNA1509_36025, RNA815_2936}
3. MligTC455_38500 357 7.43 Mlig455_022541, Mlig455_022582

Neo: -

Age: Down-Up-Down

 0.972 - - 0.972 - - -

Mlig455_022541 {REF} {Length: 1156} {TRANSSPLICED} {Pfam: Putative transmembrane protein 170 [PF10190.11, score=57.1]} {RNA1509_49815, RNA1509_55125} {RNA1310_51594, RNA1509_49815} {RNA1509_49815, RNA815_9959.1}

Mlig455_022582 {REF} {Length: 1139} {TRANSSPLICED} {Pfam: Putative transmembrane protein 170 [PF10190.11, score=57.1]} {RNA1509_24875, RNA1509_55125} {RNA1310_51594, RNA1509_24875} {RNA1509_24875, RNA815_9959.1}
4. MligTC455_07452 152 3.17 Mlig455_044769, Mlig455_053667

Neo: -

Age: -

 0.963 - - - 0.963 - -

Mlig455_044769 {REF} {Length: 2297} {RNA1509_55535} {RNA1310_15100} {RNA815_7470.1}

Mlig455_053667 {REF} {Length: 2052} {Pfam: Lectin C-type domain [PF00059.23, score=35.3]} {RNA1509_55535} {RNA1310_15100} {RNA815_7470.1}
5. MligTC455_36548 178 3.71 Mlig455_068923

Neo: -

Age: Up-Down-Up

Region-enriched R7: 2.837/0.00002

 PRKD3 0.957 - - - 0.957 - - Mlig455_068923 {REF} {Length: 3375} {Pfam: Protein kinase domain [PF00069.27, score=233.2]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=118.1]; Phorbol esters/diacylglycerol binding domain (C1 domain) [PF00130.24, score=86.5]; Lipopolysaccharide kinase (Kdo/WaaP) family [PF06293.16, score=23.8]; C1 domain [PF03107.18, score=21.7]} {Human: ENSG00000115825, PRKD3, protein kinase D3, [RH, Score=714, Expect=0.0]; ENSG00000184304, PRKD1, protein kinase D1, [RH, Score=706, Expect=0.0]; ENSG00000105287, PRKD2, protein kinase D2, [RH, Score=688, Expect=0.0]} {Mouse: ENSMUSG00000024070, Prkd3, protein kinase D3, [RH, Score=717, Expect=0.0]; ENSMUSG00000002688, Prkd1, protein kinase D1, [RH, Score=701, Expect=0.0]} {Dmel: FBgn0038603, PKD, Protein Kinase D, [RH, Score=637, Expect=0.0]} {Celegans: WBGene00012019, dkf-2, Serine/threonine-protein kinase dkf-2, [RH, Score=687, Expect=0.0]} {Smed: dd_Smed_v6_6620_0_1, dd_Smed_v6_6620_0_1, [Score=169, Expect=2e-45]} {RNA1509_31101} {RNA1310_7782, RNA1509_31101} {RNA1509_31101, RNA815_11060}
6. MligTC455_33198 253 5.26 Mlig455_062515

Neo: Irradiation

Age: Up-Down-Down, logFC(26M/2M)=-0.392

 CAMKK2 0.952 - - - 0.952 - - Mlig455_062515 {REF} {Length: 3912} {Pfam: Protein kinase domain [PF00069.27, score=207.6]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=120.0]; Kinase-like [PF14531.8, score=29.6]} {Human: ENSG00000110931, CAMKK2, calcium/calmodulin dependent protein kinase kinase 2, [RH, Score=418, Expect=3e-134]; ENSG00000004660, CAMKK1, calcium/calmodulin dependent protein kinase kinase 1, [RH, Score=399, Expect=3e-127]} {Mouse: ENSMUSG00000029471, Camkk2, calcium/calmodulin-dependent protein kinase kinase 2, beta, [RH, Score=409, Expect=9e-131]; ENSMUSG00000020785, Camkk1, calcium/calmodulin-dependent protein kinase kinase 1, alpha, [RH, Score=395, Expect=5e-126]} {Dmel: FBgn0040056, CG17698, [RH, Score=404, Expect=1e-127]} {Celegans: WBGene00000518, ckk-1, Calcium/calmodulin-dependent protein kinase kinase, [RH, Score=415, Expect=1e-133]} {Smed: dd_Smed_v6_18437_0_1, dd_Smed_v6_18437_0_1, [RH, Score=367, Expect=1e-114]} {RNA1509_51718} {RNA1310_7593.1} {RNA815_7566}
7. MligTC455_40581 643 13.4 Mlig455_048424, Mlig455_048567

Neo: Irradiation

Age: logFC(26M/2M)=0.697

 POGZ 0.951 - - - - - 0.951

Mlig455_048424 {REF} {Length: 2507} {TRANSSPLICED} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=29.6]; C2H2-type zinc finger [PF13894.8, score=22.4]; Drought induced 19 protein (Di19), zinc-binding [PF05605.14, score=19.0]} {Human: ENSG00000143442, POGZ, pogo transposable element derived with ZNF domain, [RH, Score=129, Expect=2e-30]} {Mouse: ENSMUSG00000038902, Pogz, pogo transposable element with ZNF domain, [RH, Score=131, Expect=3e-31]} {Smed: dd_Smed_v6_2118_0_1, dd_Smed_v6_2118_0_1, [Score=212, Expect=5e-59]} {RNA1509_5429} {RNA1310_8161} {RNA815_4388}

Mlig455_048567 {REF} {Length: 2583} {TRANSSPLICED} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=29.3]; C2H2-type zinc finger [PF13894.8, score=22.1]; Drought induced 19 protein (Di19), zinc-binding [PF05605.14, score=19.2]} {Human: ENSG00000143442, POGZ, pogo transposable element derived with ZNF domain, [RH, Score=129, Expect=3e-30]} {Mouse: ENSMUSG00000038902, Pogz, pogo transposable element with ZNF domain, [RH, Score=131, Expect=3e-31]} {Smed: dd_Smed_v6_2118_0_1, dd_Smed_v6_2118_0_1, [RH, Score=223, Expect=7e-63]} {RNA1509_5429} {RNA1310_8161} {RNA815_4388}

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