M. lignano Tomo-Seq
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Results for MligTC455_40235

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_40235 195 4.05 Mlig455_060181

Neo: -

Age: Up-Down-Up

 RNF32 Mlig455_060181 {REF} {Length: 1782} {TRANSSPLICED} {Pfam: Ring finger domain [PF13639.8, score=54.6]; RING-H2 zinc finger domain [PF12678.9, score=48.8]; zinc-RING finger domain [PF14634.8, score=42.3]; RING-like zinc finger [PF17123.7, score=40.3]; RING-type zinc-finger [PF13445.8, score=36.1]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=33.5]; Anaphase-promoting complex subunit 11 RING-H2 finger [PF12861.9, score=31.5]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=28.9]; IQ calmodulin-binding motif [PF00612.29, score=26.8]; Prokaryotic RING finger family 4 [PF14447.8, score=22.5]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=22.2]} {Human: ENSG00000105982, RNF32, ring finger protein 32, [RH, Score=249, Expect=1e-79]} {Mouse: ENSMUSG00000029130, Rnf32, ring finger protein 32, [RH, Score=237, Expect=1e-74]} {Smed: dd_Smed_v6_12150_0_1, dd_Smed_v6_12150_0_1, [RH, Score=189, Expect=9e-57]} {RNA1509_13385} {RNA1310_4228.2} {RNA815_13170.1}

Cumulative graph for MligTC455_40235

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.494 2.707 0.77340 1.00000
RegionR2 0.121 2.707 0.86780 1.00000
RegionR3 -0.257 2.707 0.63776 1.00000
RegionR4 -0.47 2.707 0.51375 0.83959
RegionR5 -0.248 2.707 0.60811 0.96511
RegionR6 -0.508 2.707 0.38314 0.96155
RegionR7 0.529 2.707 0.47192 1.00000
RegionR8 0.34 2.707 0.72477 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -5.712 2.707 0.28607 0.98557
RegenerationR2 0.419 2.707 0.42778 0.83268
RegenerationR3 0.364 2.707 0.56450 0.89142
RegenerationR4 0.129 2.707 0.85149 1.00000
RegenerationR5 0.627 2.707 0.25199 0.68527
RegenerationR6 0.402 2.707 0.54511 0.83617
RegenerationBL -2.31 2.707 0.05793 0.27927
RegenerationTP -1.319 2.707 0.17328 0.60605


Genes with expression patterns similar to MligTC455_40235

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_40235 195 4.05 Mlig455_060181

Neo: -

Age: Up-Down-Up

 RNF32 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_060181 {REF} {Length: 1782} {TRANSSPLICED} {Pfam: Ring finger domain [PF13639.8, score=54.6]; RING-H2 zinc finger domain [PF12678.9, score=48.8]; zinc-RING finger domain [PF14634.8, score=42.3]; RING-like zinc finger [PF17123.7, score=40.3]; RING-type zinc-finger [PF13445.8, score=36.1]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=33.5]; Anaphase-promoting complex subunit 11 RING-H2 finger [PF12861.9, score=31.5]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=28.9]; IQ calmodulin-binding motif [PF00612.29, score=26.8]; Prokaryotic RING finger family 4 [PF14447.8, score=22.5]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=22.2]} {Human: ENSG00000105982, RNF32, ring finger protein 32, [RH, Score=249, Expect=1e-79]} {Mouse: ENSMUSG00000029130, Rnf32, ring finger protein 32, [RH, Score=237, Expect=1e-74]} {Smed: dd_Smed_v6_12150_0_1, dd_Smed_v6_12150_0_1, [RH, Score=189, Expect=9e-57]} {RNA1509_13385} {RNA1310_4228.2} {RNA815_13170.1}
2. MligTC455_23451 183 3.81 Mlig455_064157

Neo: -

Age: Up-Down-Down

 SRP54 0.96 0.960 - - - - - Mlig455_064157 {REF} {Length: 2697} {TRANSSPLICED} {Pfam: SRP54-type protein, GTPase domain [PF00448.24, score=243.9]; Signal peptide binding domain [PF02978.21, score=89.0]; SRP54-type protein, helical bundle domain [PF02881.21, score=72.1]; AAA ATPase domain [PF13191.8, score=26.5]; AAA domain [PF13671.8, score=23.7]; Signal recognition particle receptor beta subunit [PF09439.12, score=23.0]; CobQ/CobB/MinD/ParA nucleotide binding domain [PF01656.25, score=22.8]; Zeta toxin [PF06414.14, score=22.1]; AAA domain (dynein-related subfamily) [PF07728.16, score=19.7]; 6-phosphofructo-2-kinase [PF01591.20, score=18.9]; CobW/HypB/UreG, nucleotide-binding domain [PF02492.21, score=18.8]} {Human: ENSG00000100883, SRP54, signal recognition particle 54, [Score=649, Expect=0.0]} {Mouse: ENSMUSG00000112449, Srp54b, signal recognition particle 54B, [Score=650, Expect=0.0]; ENSMUSG00000073079, Srp54a, signal recognition particle 54A, [Score=650, Expect=0.0]; ENSMUSG00000079108, Srp54c, signal recognition particle 54C, [Score=647, Expect=0.0]} {Dmel: FBgn0010747, Srp54k, Signal recognition particle protein 54k, [Score=613, Expect=0.0]} {Celegans: WBGene00009012, F21D5.7, Signal recognition particle 54 kDa protein, [Score=620, Expect=0.0]} {Smed: dd_Smed_v6_2045_1_1, dd_Smed_v6_2045_1_1, [Score=624, Expect=0.0]} {RNA1509_42748} {RNA1310_18797, RNA1509_42748} {RNA1509_42748, RNA815_14281}
3. MligTC455_47309 569 11.85 Mlig455_047902, Mlig455_047990

Neo: -

Age: logFC(26M/2M)=-0.322

 NSF 0.956 - - - - - 0.956

Mlig455_047902 {REF} {Length: 3210} {TRANSSPLICED} {Pfam: ATPase family associated with various cellular activities (AAA) [PF00004.31, score=169.7]; AAA+ lid domain [PF17862.3, score=38.2]; AAA ATPase domain [PF13191.8, score=34.7]; Cell division protein 48 (CDC48), N-terminal domain [PF02359.20, score=32.6]; AAA domain [PF13401.8, score=29.7]; AAA domain [PF13173.8, score=29.2]; TIP49 P-loop domain [PF06068.15, score=28.7]; NACHT domain [PF05729.14, score=27.2]; AAA domain (dynein-related subfamily) [PF07728.16, score=26.0]; AAA domain (Cdc48 subfamily) [PF07724.16, score=25.6]; AAA domain [PF13238.8, score=25.5]; AAA domain [PF13671.8, score=22.9]; Threonylcarbamoyl adenosine biosynthesis protein TsaE [PF02367.19, score=22.5]; RNA helicase [PF00910.24, score=22.0]; Holliday junction DNA helicase RuvB P-loop domain [PF05496.14, score=21.8]; Cell division protein 48 (CDC48), domain 2 [PF02933.19, score=21.5]; ATPase domain predominantly from Archaea [PF01637.20, score=21.2]; Magnesium chelatase, subunit ChlI [PF01078.23, score=20.7]} {Human: ENSG00000073969, NSF, N-ethylmaleimide sensitive factor, vesicle fusing ATPase, [RH, Score=759, Expect=0.0]; ENSG00000278174, NSF, N-ethylmaleimide sensitive factor, vesicle fusing ATPase, [RH, Score=759, Expect=0.0]; ENSG00000276262, NSF, N-ethylmaleimide sensitive factor, vesicle fusing ATPase, [RH, Score=759, Expect=0.0]} {Mouse: ENSMUSG00000034187, Nsf, N-ethylmaleimide sensitive fusion protein, [RH, Score=756, Expect=0.0]} {Dmel: FBgn0266464, Nsf2, N-ethylmaleimide-sensitive factor 2, [RH, Score=816, Expect=0.0]} {Celegans: WBGene00003818, nsf-1, Vesicle-fusing ATPase, [RH, Score=676, Expect=0.0]} {Smed: dd_Smed_v6_3364_0_1, dd_Smed_v6_3364_0_1, [RH, Score=631, Expect=0.0]} {RNA1509_35440} {RNA1310_7474} {RNA815_4714}

Mlig455_047990 {REF} {Length: 3208} {TRANSSPLICED} {Pfam: ATPase family associated with various cellular activities (AAA) [PF00004.31, score=168.7]; AAA+ lid domain [PF17862.3, score=37.8]; THAP domain [PF05485.14, score=35.8]; AAA ATPase domain [PF13191.8, score=33.6]; Cell division protein 48 (CDC48), N-terminal domain [PF02359.20, score=33.2]; AAA domain [PF13401.8, score=28.4]; AAA domain [PF13173.8, score=28.3]; TIP49 P-loop domain [PF06068.15, score=27.9]; NACHT domain [PF05729.14, score=25.9]; AAA domain (dynein-related subfamily) [PF07728.16, score=25.4]; AAA domain (Cdc48 subfamily) [PF07724.16, score=24.9]; AAA domain [PF13238.8, score=24.7]; AAA domain [PF13671.8, score=22.1]; Threonylcarbamoyl adenosine biosynthesis protein TsaE [PF02367.19, score=21.8]; Cell division protein 48 (CDC48), domain 2 [PF02933.19, score=21.5]; RNA helicase [PF00910.24, score=21.3]; Holliday junction DNA helicase RuvB P-loop domain [PF05496.14, score=21.0]; Magnesium chelatase, subunit ChlI [PF01078.23, score=20.0]; ATPase domain predominantly from Archaea [PF01637.20, score=19.8]} {Human: ENSG00000276262, NSF, N-ethylmaleimide sensitive factor, vesicle fusing ATPase, [RH, Score=760, Expect=0.0]; ENSG00000278174, NSF, N-ethylmaleimide sensitive factor, vesicle fusing ATPase, [RH, Score=760, Expect=0.0]; ENSG00000073969, NSF, N-ethylmaleimide sensitive factor, vesicle fusing ATPase, [RH, Score=760, Expect=0.0]} {Mouse: ENSMUSG00000034187, Nsf, N-ethylmaleimide sensitive fusion protein, [RH, Score=756, Expect=0.0]} {Dmel: FBgn0266464, Nsf2, N-ethylmaleimide-sensitive factor 2, [RH, Score=818, Expect=0.0]} {Celegans: WBGene00003818, nsf-1, Vesicle-fusing ATPase, [RH, Score=677, Expect=0.0]} {Smed: dd_Smed_v6_3364_0_1, dd_Smed_v6_3364_0_1, [RH, Score=630, Expect=0.0]} {RNA1509_35440} {RNA1310_7474} {RNA815_4714}
4. MligTC455_46585 37 0.76 Mlig455_014468

Neo: -

Age: -

 FOXL1 0.951 - - - - 0.951 - Mlig455_014468 {REF} {Length: 1626} {Pfam: Forkhead domain [PF00250.20, score=137.2]} {Human: ENSG00000176678, FOXL1, forkhead box L1, [Score=182, Expect=5e-55]} {Mouse: ENSMUSG00000097084, Foxl1, forkhead box L1, [Score=187, Expect=2e-57]} {Dmel: FBgn0014143, croc, crocodile, [Score=152, Expect=3e-42]} {Celegans: WBGene00004013, pha-4, Defective pharyngeal development protein 4, [Score=145, Expect=2e-40]} {Smed: dd_Smed_v6_19255_0_1, dd_Smed_v6_19255_0_1, [Score=175, Expect=2e-53]} {RNA1310_141907} {RNA815_63830}
5. MligTC455_24144 123 2.55 Mlig455_069389

Neo: -

Age: -

Region-specific R4: 5.241

Region-enriched R4: 4.115/0.00015

 0.95 - - - - 0.950 - Mlig455_069389 {REF} {Length: 1744} {RNA1509_35501} {RNA1310_30027.1} {RNA815_13361}

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