TomoSeq data search

Data search

Results for MligTC455_40370

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_40370

471

9.81

Mlig455_014427

Neo: -

Age: Down-Up-Up

Region-enriched R2: 2.144/0.03026

FCF1

Mlig455_014427 {REF} {Length: 1317} {TRANSSPLICED} {Pfam: Fcf1 [PF04900.14, score=112.4]; PIN like domain [PF18477.3, score=29.5]} {Human: ENSG00000119616, FCF1, FCF1, rRNA-processing protein, [RH, Score=239, Expect=1e-80]} {Mouse: ENSMUSG00000021243, Fcf1, FCF1 rRNA processing protein, [RH, Score=236, Expect=1e-79]} {Dmel: FBgn0010520, Bka, Bekka, [RH, Score=231, Expect=1e-77]} {Celegans: WBGene00009266, F30A10.9, [RH, Score=234, Expect=4e-79]} {Smed: dd_Smed_v6_8522_0_1, dd_Smed_v6_8522_0_1, [RH, Score=212, Expect=2e-70]} {RNA1509_25561} {RNA1310_26980} {RNA815_17227}

Cumulative graph for MligTC455_40370

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-2.673	3.785	0.03205	0.45412
RegionR2	2.144	3.785	0.00162	0.03026
RegionR3	0.531	3.785	0.29637	0.83805
RegionR4	-1.743	3.785	0.01003	0.06114
RegionR5	-0.463	3.785	0.32232	0.66459
RegionR6	0.813	3.785	0.11820	0.62694
RegionR7	-0.215	3.785	0.77623	1.00000
RegionR8	1.607	3.785	0.02216	0.29039

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-2.422	3.785	0.69270	1.00000
RegenerationR2	-1.674	3.785	0.02498	0.26092
RegenerationR3	0.094	3.785	0.87732	1.00000
RegenerationR4	-0.017	3.785	0.99774	1.00000
RegenerationR5	0.083	3.785	0.88234	1.00000
RegenerationR6	-0.16	3.785	0.83661	0.99414
RegenerationBL	0.542	3.785	0.51449	0.87775
RegenerationTP	0.804	3.785	0.33387	0.77807

Genes with expression patterns similar to MligTC455_40370

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_40370	471	9.81	Mlig455_014427	Neo: - Age: Down-Up-Up Region-enriched R2: 2.144/0.03026	FCF1	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_014427 {REF} {Length: 1317} {TRANSSPLICED} {Pfam: Fcf1 [PF04900.14, score=112.4]; PIN like domain [PF18477.3, score=29.5]} {Human: ENSG00000119616, FCF1, FCF1, rRNA-processing protein, [RH, Score=239, Expect=1e-80]} {Mouse: ENSMUSG00000021243, Fcf1, FCF1 rRNA processing protein, [RH, Score=236, Expect=1e-79]} {Dmel: FBgn0010520, Bka, Bekka, [RH, Score=231, Expect=1e-77]} {Celegans: WBGene00009266, F30A10.9, [RH, Score=234, Expect=4e-79]} {Smed: dd_Smed_v6_8522_0_1, dd_Smed_v6_8522_0_1, [RH, Score=212, Expect=2e-70]} {RNA1509_25561} {RNA1310_26980} {RNA815_17227}
2.	MligTC455_40371	625	13.02	Mlig455_070175	Neo: - Age: -	FCF1	2.613	0.889	0.953	-	0.771	-	-	Mlig455_070175 {REF} {Length: 1322} {TRANSSPLICED} {Pfam: Fcf1 [PF04900.14, score=25.2]} {Human: ENSG00000119616, FCF1, FCF1, rRNA-processing protein, [Score=84.3, Expect=5e-22]} {Mouse: ENSMUSG00000021243, Fcf1, FCF1 rRNA processing protein, [Score=82.8, Expect=2e-21]} {Dmel: FBgn0010520, Bka, Bekka, [Score=85.9, Expect=9e-23]} {Celegans: WBGene00009266, F30A10.9, [Score=79.7, Expect=2e-20]} {Smed: dd_Smed_v6_8522_0_1, dd_Smed_v6_8522_0_1, [Score=85.9, Expect=6e-23]} {RNA1509_12201, RNA1509_25561} {RNA1310_26980, RNA1509_12201, RNA1509_25561} {RNA1509_12201, RNA1509_25561, RNA815_17227}
3.	MligTC455_20677	153	3.19	Mlig455_065028	Neo: - Age: Down-Up-Up, logFC(26M/2M)=0.263	ARPC2	0.971	-	-	-	-	0.971	-	Mlig455_065028 {REF} {Length: 2143} {Pfam: Arp2/3 complex, 34 kD subunit p34-Arc [PF04045.16, score=310.3]} {Human: ENSG00000163466, ARPC2, actin related protein 2/3 complex subunit 2, [RH, Score=382, Expect=2e-133]} {Mouse: ENSMUSG00000006304, Arpc2, actin related protein 2/3 complex, subunit 2, [RH, Score=384, Expect=2e-134]} {Dmel: FBgn0032859, Arpc2, Actin-related protein 2/3 complex, subunit 2, [RH, Score=380, Expect=2e-133]} {Celegans: WBGene00021170, arx-4, Probable actin-related protein 2/3 complex subunit 2, [RH, Score=358, Expect=2e-124]} {Smed: dd_Smed_v6_693_0_1, dd_Smed_v6_693_0_1, [RH, Score=321, Expect=1e-109]} {RNA1509_1503, RNA1509_35964, RNA1509_39058} {RNA1310_13749, RNA1509_1503, RNA1509_35964, RNA1509_39058} {RNA1509_1503, RNA1509_35964, RNA1509_39058, RNA815_6029}
4.	MligTC455_16444	105	2.19	Mlig455_020571	Neo: Int S/G2/M Age: - Region-enriched R5: 4.202/0.00000		0.957	-	-	-	0.957	-	-	Mlig455_020571 {REF} {Length: 3072} {TRANSSPLICED} {Pfam: linker histone H1 and H5 family [PF00538.21, score=50.6]; F-box-like [PF12937.9, score=34.5]; F-box domain [PF00646.35, score=23.2]} {Mouse: ENSMUSG00000048520, Fbxl13, F-box and leucine-rich repeat protein 13, [Score=57.0, Expect=6e-08]} {Dmel: FBgn0053831, His1:CG33831, [Score=58.5, Expect=3e-09]} {Smed: dd_Smed_v6_601_0_1, dd_Smed_v6_601_0_1, [Score=58.9, Expect=1e-09]} {RNA1509_29982, RNA1509_58429} {RNA1310_13041, RNA1509_29982, RNA1509_58429} {RNA1509_29982, RNA1509_58429, RNA815_27586}
5.	MligTC455_24493	1599	33.31	Mlig455_019963, Mlig455_026408	Neo: - Age: Down-Up-Up, logFC(26M/2M)=-0.516 Region-enriched R8: 2.238/0.00001 Region-enriched R7: 2.226/0.00000 Region-enriched R6: 1.588/0.00174		0.952	-	-	-	-	0.952	-	Mlig455_019963 {REF} {Length: 1390} {RNA1509_9617} {RNA1310_23758.1} {RNA815_11447.1} Mlig455_026408 {REF} {Length: 2438} {RNA1509_9617} {RNA1310_23758.1, RNA1509_9617} {RNA1509_9617, RNA815_11447.1}
6.	MligTC455_43283	504	10.49	Mlig455_007472	Neo: - Age: -	MYO1D	0.952	-	-	-	0.952	-	-	Mlig455_007472 {REF} {Length: 4098} {Pfam: Myosin head (motor domain) [PF00063.23, score=730.1]; AAA ATPase domain [PF13191.8, score=20.0]} {Human: ENSG00000176658, MYO1D, myosin ID, [RH, Score=790, Expect=0.0]} {Mouse: ENSMUSG00000035441, Myo1d, myosin ID, [RH, Score=781, Expect=0.0]; ENSMUSG00000020437, Myo1g, myosin IG, [RH, Score=754, Expect=0.0]} {Dmel: FBgn0086347, Myo31DF, Myosin 31DF, [RH, Score=773, Expect=0.0]} {Celegans: WBGene00002038, hum-5, Heavy chain, Unconventional Myosin; Myosin IA, [RH, Score=774, Expect=0.0]} {Smed: dd_Smed_v6_3957_0_1, dd_Smed_v6_3957_0_1, [RH, Score=843, Expect=0.0]} {RNA1509_24014, RNA1509_5109} {RNA1310_12241, RNA1509_24014, RNA1509_5109} {RNA1509_24014, RNA1509_5109, RNA815_4375}

Berezikov Lab - 2020-2021 © ERIBA