M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_40386

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_40386 17 0.36 Mlig455_068850, Mlig455_070152

Neo: -

Age: Down-Up-Down

Mlig455_068850 {REF} {Length: 713} {NoTransDecoderORF} {RNA1509_23515} {RNA1310_9759} {RNA815_3094.1}

Mlig455_070152 {REF} {Length: 684} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_23515} {RNA1310_9759} {RNA815_3094.1}

Cumulative graph for MligTC455_40386

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -3.383 0.745 0.99947 1.00000
RegionR2 2.757 0.745 0.07913 0.34430
RegionR3 1.697 0.745 0.14053 0.64063
RegionR4 0.158 0.745 0.98804 1.00000
RegionR5 -0.704 0.745 0.92537 1.00000
RegionR6 1.839 0.745 0.23687 0.82017
RegionR7 -1.325 0.745 0.99970 1.00000
RegionR8 -1.038 0.745 0.99968 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 5.505 0.745 0.99985 1.00000
RegenerationR2 1.704 0.745 0.16224 0.59953
RegenerationR3 3.229 0.745 0.00601 0.13959
RegenerationR4 1.145 0.745 0.07340 0.43045
RegenerationR5 2.196 0.745 0.04495 0.34698
RegenerationR6 1.107 0.745 0.36259 0.70679
RegenerationBL 2.387 0.745 0.99994 1.00000
RegenerationTP 6.445 0.745 0.00207 0.07356


Genes with expression patterns similar to MligTC455_40386

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_40386 17 0.36 Mlig455_068850, Mlig455_070152

Neo: -

Age: Down-Up-Down

 1 - 1.000 - - - -

Mlig455_068850 {REF} {Length: 713} {NoTransDecoderORF} {RNA1509_23515} {RNA1310_9759} {RNA815_3094.1}

Mlig455_070152 {REF} {Length: 684} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_23515} {RNA1310_9759} {RNA815_3094.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA