TomoSeq data search

Data search

Results for MligTC455_40492

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_40492

981

20.44

Mlig455_061695

Neo: -

Age: logFC(26M/2M)=0.809

BCAS3

Mlig455_061695 {REF} {Length: 6013} {TRANSSPLICED} {Pfam: Breast carcinoma amplified sequence 3 [PF12490.10, score=59.8]} {Human: ENSG00000141376, BCAS3, BCAS3, microtubule associated cell migration factor, [RH, Score=249, Expect=2e-69]} {Mouse: ENSMUSG00000059439, Bcas3, breast carcinoma amplified sequence 3, [RH, Score=252, Expect=5e-71]} {Dmel: FBgn0266019, rudhira, [RH, Score=192, Expect=3e-50]} {Celegans: WBGene00018953, F56C9.10, [Score=162, Expect=1e-40]} {Smed: dd_Smed_v6_7548_0_1, dd_Smed_v6_7548_0_1, [RH, Score=166, Expect=2e-42]} {RNA1509_3732} {RNA1310_7059, RNA1509_3732} {RNA1509_3732, RNA815_2410}

Cumulative graph for MligTC455_40492

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	0.466	4.545	0.53598	1.00000
RegionR2	-1.201	4.545	0.00245	0.04040
RegionR3	-0.286	4.545	0.37511	0.90847
RegionR4	0.726	4.545	0.05091	0.19516
RegionR5	0.478	4.545	0.10319	0.31150
RegionR6	0.11	4.545	0.73157	1.00000
RegionR7	0.137	4.545	0.72010	1.00000
RegionR8	-0.43	4.545	0.39077	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-8.615	4.545	0.00433	0.33139
RegenerationR2	-0.42	4.545	0.27376	0.71905
RegenerationR3	-0.38	4.545	0.31930	0.74764
RegenerationR4	-0.547	4.545	0.15180	0.58070
RegenerationR5	-0.033	4.545	0.92414	1.00000
RegenerationR6	-0.871	4.545	0.02689	0.20544
RegenerationBL	-0.718	4.545	0.10815	0.38813
RegenerationTP	-0.66	4.545	0.16897	0.60194

Genes with expression patterns similar to MligTC455_40492

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_40492	981	20.44	Mlig455_061695	Neo: - Age: logFC(26M/2M)=0.809	BCAS3	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_061695 {REF} {Length: 6013} {TRANSSPLICED} {Pfam: Breast carcinoma amplified sequence 3 [PF12490.10, score=59.8]} {Human: ENSG00000141376, BCAS3, BCAS3, microtubule associated cell migration factor, [RH, Score=249, Expect=2e-69]} {Mouse: ENSMUSG00000059439, Bcas3, breast carcinoma amplified sequence 3, [RH, Score=252, Expect=5e-71]} {Dmel: FBgn0266019, rudhira, [RH, Score=192, Expect=3e-50]} {Celegans: WBGene00018953, F56C9.10, [Score=162, Expect=1e-40]} {Smed: dd_Smed_v6_7548_0_1, dd_Smed_v6_7548_0_1, [RH, Score=166, Expect=2e-42]} {RNA1509_3732} {RNA1310_7059, RNA1509_3732} {RNA1509_3732, RNA815_2410}
2.	MligTC455_42631	825	17.2	Mlig455_008330	Neo: - Age: Up-Down-Down Region-enriched R3: 1.064/0.00846	TSPAN31	2.439	-	-	-	0.728	0.751	0.960	Mlig455_008330 {REF} {Length: 4061} {TRANSSPLICED} {Pfam: Tetraspanin family [PF00335.22, score=66.9]} {Human: ENSG00000135452, TSPAN31, tetraspanin 31, [RH, Score=171, Expect=6e-53]} {Mouse: ENSMUSG00000006736, Tspan31, tetraspanin 31, [RH, Score=170, Expect=1e-52]} {Dmel: FBgn0039465, Tsp97E, Tetraspanin 97E, [RH, Score=172, Expect=9e-54]} {Smed: dd_Smed_v6_2862_0_1, dd_Smed_v6_2862_0_1, [RH, Score=167, Expect=6e-52]} {RNA1509_14780, RNA1509_18885, RNA1509_45535, RNA1509_46889, RNA1509_47032, RNA1509_47420, RNA1509_51697, RNA1509_54303} {RNA1310_20594.1, RNA1509_14780, RNA1509_18885, RNA1509_45535, RNA1509_46889, RNA1509_47032, RNA1509_47420, RNA1509_51697, RNA1509_54303} {RNA1509_14780, RNA1509_18885, RNA1509_45535, RNA1509_46889, RNA1509_47032, RNA1509_47420, RNA1509_51697, RNA1509_54303, RNA815_19587}
3.	MligTC455_51492	890	18.54	Mlig455_066390	Neo: - Age: Down-Up-Down Region-enriched R5: 1.126/0.00425		1.66	-	-	-	0.710	-	0.950	Mlig455_066390 {REF} {Length: 919} {TRANSSPLICED} {Pfam: K-box region [PF01486.19, score=19.6]} {RNA1509_47304, RNA1509_53983} {RNA1310_22102.1, RNA1509_53983} {RNA1509_53983, RNA815_17619.3}
4.	MligTC455_47745	276	5.75	Mlig455_033036	Neo: - Age: Down-Up-Up	ISY1-RAB43	0.97	-	-	-	-	-	0.970	Mlig455_033036 {REF} {Length: 1233} {TRANSSPLICED} {Pfam: Isy1-like splicing family [PF06246.14, score=272.2]} {Human: ENSG00000261796, ISY1-RAB43, ISY1-RAB43 readthrough, [RH, Score=273, Expect=1e-89]; ENSG00000240682, ISY1, ISY1 splicing factor homolog, [RH, Score=272, Expect=3e-90]} {Mouse: ENSMUSG00000030056, Isy1, ISY1 splicing factor homolog, [RH, Score=273, Expect=8e-91]} {Dmel: FBgn0037550, CG9667, [RH, Score=246, Expect=2e-80]} {Celegans: WBGene00009966, isy-1, [RH, Score=196, Expect=3e-61]} {Smed: dd_Smed_v6_3703_0_1, dd_Smed_v6_3703_0_1, [RH, Score=223, Expect=4e-71]} {RNA1509_23133} {RNA1310_28486.1} {RNA815_6168}
5.	MligTC455_39790	22547	469.74	Mlig455_054533, Mlig455_055385, Mlig455_055459	Neo: Int S/G2/M Age: Down-Up-Up, logFC(26M/2M)=0.315	RPL35	0.958	-	-	-	0.958	-	-	Mlig455_054533 {REF} {Length: 508} {TRANSSPLICED} {Pfam: Ribosomal L29 protein [PF00831.25, score=63.9]} {Human: ENSG00000136942, RPL35, ribosomal protein L35, [RH, Score=144, Expect=2e-45]} {Mouse: ENSMUSG00000078193, Gm2000, predicted gene 2000, [RH, Score=145, Expect=1e-45]; ENSMUSG00000062997, Rpl35, ribosomal protein L35, [RH, Score=145, Expect=1e-45]} {Dmel: FBgn0029785, RpL35, Ribosomal protein L35, [RH, Score=137, Expect=7e-43]} {Celegans: WBGene00004449, rpl-35, 60S ribosomal protein L35, [RH, Score=120, Expect=3e-36]} {Smed: dd_Smed_v6_168_0_1, dd_Smed_v6_168_0_1, [RH, Score=104, Expect=6e-30]} {RNA1509_2855, RNA1509_41554, RNA1509_5741, RNA1509_7424, RNA1509_9000} {RNA1310_68306.2, RNA1509_2855, RNA1509_41554, RNA1509_5741, RNA1509_7424} {RNA1509_2855, RNA1509_41554, RNA1509_5741, RNA1509_7424, RNA815_35452} Mlig455_055385 {REF} {Length: 508} {TRANSSPLICED} {Pfam: Ribosomal L29 protein [PF00831.25, score=63.9]} {Human: ENSG00000136942, RPL35, ribosomal protein L35, [RH, Score=140, Expect=6e-44]} {Mouse: ENSMUSG00000078193, Gm2000, predicted gene 2000, [RH, Score=141, Expect=2e-44]; ENSMUSG00000062997, Rpl35, ribosomal protein L35, [RH, Score=141, Expect=2e-44]} {Dmel: FBgn0029785, RpL35, Ribosomal protein L35, [RH, Score=138, Expect=3e-43]} {Celegans: WBGene00004449, rpl-35, 60S ribosomal protein L35, [RH, Score=120, Expect=3e-36]} {Smed: dd_Smed_v6_168_0_1, dd_Smed_v6_168_0_1, [RH, Score=104, Expect=5e-30]} {RNA1509_1154, RNA1509_9000} {RNA1310_68306.2, RNA1509_1154, RNA1509_9000} {RNA1509_1154, RNA1509_9000, RNA815_35452} Mlig455_055459 {REF} {Length: 508} {TRANSSPLICED} {Pfam: Ribosomal L29 protein [PF00831.25, score=63.9]} {Human: ENSG00000136942, RPL35, ribosomal protein L35, [RH, Score=144, Expect=2e-45]} {Mouse: ENSMUSG00000078193, Gm2000, predicted gene 2000, [RH, Score=145, Expect=1e-45]; ENSMUSG00000062997, Rpl35, ribosomal protein L35, [RH, Score=145, Expect=1e-45]} {Dmel: FBgn0029785, RpL35, Ribosomal protein L35, [RH, Score=137, Expect=7e-43]} {Celegans: WBGene00004449, rpl-35, 60S ribosomal protein L35, [RH, Score=120, Expect=3e-36]} {Smed: dd_Smed_v6_168_0_1, dd_Smed_v6_168_0_1, [RH, Score=104, Expect=6e-30]} {RNA1509_14871, RNA1509_9000} {RNA1310_68306.2, RNA1509_14871} {RNA1509_14871, RNA815_35452}
6.	MligTC455_18770	7146	148.88	Mlig455_034640, Mlig455_062634	Neo: Neoblast Age: logFC(26M/2M)=0.357 Region-enriched R5: 1.356/0.00002 Region-enriched R4: 1.158/0.00489 Regeneration-enriched TP: 1.617 Regeneration-enriched BL: 1.217	SNU13	0.957	-	-	-	0.957	-	-	Mlig455_034640 {REF} {Length: 638} {TRANSSPLICED} {Pfam: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family [PF01248.28, score=95.8]; PELOTA RNA binding domain [PF15608.8, score=18.4]} {Human: ENSG00000100138, SNU13, small nuclear ribonucleoprotein 13, [RH, Score=184, Expect=8e-61]} {Mouse: ENSMUSG00000063480, Snu13, SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5), [RH, Score=184, Expect=5e-61]} {Dmel: FBgn0015393, hoip, hoi-polloi, [RH, Score=195, Expect=1e-65]} {Celegans: WBGene00010896, M28.5, NHP2-like protein 1 homolog, [RH, Score=171, Expect=3e-56]} {Smed: dd_Smed_v6_1928_0_1, dd_Smed_v6_1928_0_1, [RH, Score=156, Expect=2e-50]} {RNA1509_58876, RNA1509_8419} {RNA1310_54817, RNA1509_8419} {RNA1509_8419, RNA815_28959} Mlig455_062634 {REF} {Length: 637} {TRANSSPLICED} {Pfam: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family [PF01248.28, score=95.8]; PELOTA RNA binding domain [PF15608.8, score=18.4]} {Human: ENSG00000100138, SNU13, small nuclear ribonucleoprotein 13, [RH, Score=184, Expect=8e-61]} {Mouse: ENSMUSG00000063480, Snu13, SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5), [RH, Score=184, Expect=5e-61]} {Dmel: FBgn0015393, hoip, hoi-polloi, [RH, Score=195, Expect=1e-65]} {Celegans: WBGene00010896, M28.5, NHP2-like protein 1 homolog, [RH, Score=171, Expect=3e-56]} {Smed: dd_Smed_v6_1928_0_1, dd_Smed_v6_1928_0_1, [RH, Score=156, Expect=2e-50]} {RNA1509_14815, RNA1509_58876} {RNA1310_54817, RNA1509_14815, RNA1509_58876} {RNA1509_14815, RNA1509_58876, RNA815_28959}
7.	MligTC455_43021	837	17.43	Mlig455_006334	Neo: - Age: - Region-enriched R4: 1.971/0.00562 Region-enriched R5: 1.754/0.00033	RAB35	0.956	-	-	-	-	-	0.956	Mlig455_006334 {REF} {Length: 2734} {Pfam: Ras family [PF00071.24, score=200.9]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=120.5]; ADP-ribosylation factor family [PF00025.23, score=55.4]; 50S ribosome-binding GTPase [PF01926.25, score=27.8]; RsgA GTPase [PF03193.18, score=23.2]; Elongation factor Tu GTP binding domain [PF00009.29, score=22.4]; Gtr1/RagA G protein conserved region [PF04670.14, score=20.3]} {Human: ENSG00000111737, RAB35, RAB35, member RAS oncogene family, [RH, Score=249, Expect=2e-84]} {Mouse: ENSMUSG00000029518, Rab35, RAB35, member RAS oncogene family, [RH, Score=249, Expect=2e-84]} {Dmel: FBgn0031090, Rab35, [RH, Score=236, Expect=3e-79]} {Celegans: WBGene00004284, rab-35, RAB family, [RH, Score=232, Expect=9e-78]} {Smed: dd_Smed_v6_488_0_1, dd_Smed_v6_488_0_1, [Score=209, Expect=6e-69]} {RNA1509_19785, RNA1509_46148} {RNA1310_25273, RNA1509_46148} {RNA1509_46148, RNA815_11011.1}
8.	MligTC455_39789	7445	155.1	Mlig455_028826, Mlig455_036262	Neo: - Age: logFC(26M/2M)=-0.843	GLRA2, RPL35	0.955	-	-	-	0.955	-	-	Mlig455_028826 {REF} {Length: 1888} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=140.2]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=101.0]} {Human: ENSG00000101958, GLRA2, glycine receptor alpha 2, [Score=263, Expect=1e-81]; ENSG00000188828, GLRA4, glycine receptor alpha 4, [Score=261, Expect=3e-81]; ENSG00000145451, GLRA3, glycine receptor alpha 3, [Score=259, Expect=4e-80]; ENSG00000145888, GLRA1, glycine receptor alpha 1, [Score=256, Expect=3e-79]} {Mouse: ENSMUSG00000018595, Glra4, glycine receptor, alpha 4 subunit, [Score=266, Expect=5e-83]; ENSMUSG00000018589, Glra2, glycine receptor, alpha 2 subunit, [Score=262, Expect=1e-81]; ENSMUSG00000038257, Glra3, glycine receptor, alpha 3 subunit, [Score=258, Expect=1e-79]; ENSMUSG00000000263, Glra1, glycine receptor, alpha 1 subunit, [Score=256, Expect=5e-79]} {Dmel: FBgn0030707, CG8916, [Score=236, Expect=3e-71]} {Celegans: WBGene00001591, glc-1, Glutamate-gated chloride channel alpha, [Score=238, Expect=1e-72]} {Smed: dd_Smed_v6_11342_0_1, dd_Smed_v6_11342_0_1, [Score=275, Expect=5e-87]} {RNA1310_64518} Mlig455_036262 {REF} {Length: 507} {TRANSSPLICED} {Pfam: Ribosomal L29 protein [PF00831.25, score=63.9]} {Human: ENSG00000136942, RPL35, ribosomal protein L35, [RH, Score=140, Expect=6e-44]} {Mouse: ENSMUSG00000078193, Gm2000, predicted gene 2000, [RH, Score=141, Expect=2e-44]; ENSMUSG00000062997, Rpl35, ribosomal protein L35, [RH, Score=141, Expect=2e-44]} {Dmel: FBgn0029785, RpL35, Ribosomal protein L35, [RH, Score=138, Expect=3e-43]} {Celegans: WBGene00004449, rpl-35, 60S ribosomal protein L35, [RH, Score=120, Expect=3e-36]} {Smed: dd_Smed_v6_168_0_1, dd_Smed_v6_168_0_1, [RH, Score=104, Expect=5e-30]} {RNA1509_9000} {RNA1310_68306.2} {RNA815_35452}
9.	MligTC455_25468	835	17.4	Mlig455_059894	Neo: Int S/G2/M Age: Up-Down-Up Region-enriched R4: 1.400/0.01794	PNKP	0.95	-	-	-	-	-	0.950	Mlig455_059894 {REF} {Length: 3283} {Pfam: AAA domain [PF13671.8, score=41.5]; Chromatin associated protein KTI12 [PF08433.12, score=30.2]; Polynucleotide kinase 3 phosphatase [PF08645.13, score=24.0]; AAA ATPase domain [PF13191.8, score=23.8]} {Human: ENSG00000039650, PNKP, polynucleotide kinase 3'-phosphatase, [Score=144, Expect=2e-39]} {Mouse: ENSMUSG00000002963, Pnkp, polynucleotide kinase 3'- phosphatase, [Score=140, Expect=5e-38]} {Dmel: FBgn0037578, CG9601, [Score=132, Expect=7e-35]} {Celegans: WBGene00009010, F21D5.5, [Score=164, Expect=9e-48]} {Smed: dd_Smed_v6_1211_0_2, dd_Smed_v6_1211_0_2, [Score=146, Expect=9e-41]} {RNA1509_29141, RNA1509_38859} {RNA1310_5154.1, RNA1509_29141} {RNA1509_29141, RNA815_12031}
10.	MligTC455_30041	2719	56.65	Mlig455_004160, Mlig455_004186	Neo: - Age: logFC(26M/2M)=0.572 Region-enriched R4: 1.550/0.00000	FAR1	0.95	-	-	-	-	-	0.950	Mlig455_004160 {REF} {Length: 2497} {TRANSSPLICED} {Pfam: Male sterility protein [PF07993.14, score=246.1]; Male sterility protein [PF03015.21, score=96.6]} {Human: ENSG00000197601, FAR1, fatty acyl-CoA reductase 1, [RH, Score=466, Expect=7e-160]} {Mouse: ENSMUSG00000030759, Far1, fatty acyl CoA reductase 1, [RH, Score=467, Expect=1e-160]} {Dmel: FBgn0034145, CG5065, [RH, Score=428, Expect=7e-144]} {Celegans: WBGene00022200, fard-1, Fatty acyl-CoA reductase, [RH, Score=406, Expect=1e-136]} {Smed: dd_Smed_v6_7206_0_1, dd_Smed_v6_7206_0_1, [RH, Score=375, Expect=1e-124]} {RNA1509_13010} {RNA1310_6154} {RNA815_2225} Mlig455_004186 {REF} {Length: 2492} {TRANSSPLICED} {Pfam: Male sterility protein [PF07993.14, score=243.0]; Male sterility protein [PF03015.21, score=96.5]; NAD dependent epimerase/dehydratase family [PF01370.23, score=18.7]} {Human: ENSG00000197601, FAR1, fatty acyl-CoA reductase 1, [RH, Score=464, Expect=5e-159]} {Mouse: ENSMUSG00000030759, Far1, fatty acyl CoA reductase 1, [RH, Score=466, Expect=6e-160]} {Dmel: FBgn0034145, CG5065, [RH, Score=424, Expect=2e-142]} {Celegans: WBGene00022200, fard-1, Fatty acyl-CoA reductase, [RH, Score=404, Expect=7e-136]} {Smed: dd_Smed_v6_7206_0_1, dd_Smed_v6_7206_0_1, [RH, Score=374, Expect=5e-124]} {RNA1509_13010, RNA1509_2627} {RNA1310_6154, RNA1509_13010, RNA1509_2627} {RNA1509_13010, RNA1509_2627, RNA815_2225}

Berezikov Lab - 2020-2021 © ERIBA