Data search
Results for MligTC455_40538
| Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Annotation |
|---|---|---|---|---|---|---|
| MligTC455_40538 | 198 | 4.13 | Mlig455_008812 | Neo: - |
Mlig455_008812 {REF} {Length: 1095} {RNA1509_53279} {RNA1310_34746} {RNA815_35566} |
Cumulative graph for MligTC455_40538
Region-enriched expression
| Region | logFC | logCPM | Pvalue | FDR | Specificity |
|---|---|---|---|---|---|
| RegionR1 | -5.53 | 2.724 | 1.00000 | 1.00000 | |
| RegionR2 | 2.426 | 2.724 | 0.05211 | 0.27297 | |
| RegionR3 | 1.484 | 2.724 | 0.17873 | 0.70815 | |
| RegionR4 | 1.037 | 2.724 | 0.36696 | 0.69009 | |
| RegionR5 | 1.258 | 2.724 | 0.23807 | 0.54837 | |
| RegionR6 | 1.869 | 2.724 | 0.08608 | 0.54034 | |
| RegionR7 | -5.261 | 2.724 | 1.00000 | 1.00000 | |
| RegionR8 | 2.716 | 2.724 | 0.02181 | 0.28848 |
Regeneration-enriched expression
| Region | logFC | logCPM | PValue | FDR | Specificity |
|---|---|---|---|---|---|
| RegenerationR1 | 0.795 | 2.724 | 0.99994 | 1.00000 | |
| RegenerationR2 | 0.183 | 2.724 | 0.82535 | 0.99615 | |
| RegenerationR3 | 1.197 | 2.724 | 0.21183 | 0.64785 | |
| RegenerationR4 | 1.135 | 2.724 | 0.26007 | 0.70817 | |
| RegenerationR5 | 1.578 | 2.724 | 0.07424 | 0.42637 | |
| RegenerationR6 | 0.18 | 2.724 | 0.85067 | 1.00000 | |
| RegenerationBL | -0.155 | 2.724 | 0.78760 | 1.00000 | |
| RegenerationTP | 2.868 | 2.724 | 0.09375 | 0.48014 |
Genes with expression patterns similar to MligTC455_40538
| Nr. | Cluster | Total UMI counts | Global CPM | Transcripts | Categories | Human homolog | Σ Spearman correlations | Int1 | Int2 | Int3 | Reg1 | Reg2 | Reg3 | Annotation |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1. | MligTC455_40538 | 198 | 4.13 | Mlig455_008812 | Neo: - |
6 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | 1.000 | Mlig455_008812 {REF} {Length: 1095} {RNA1509_53279} {RNA1310_34746} {RNA815_35566} | |
| 2. | MligTC455_44014 | 525 | 10.94 | Mlig455_055228 | Neo: Int S/G2/M Age: Down-Up-Up |
U2SURP | 1.805 | 0.851 | - | - | - | - | 0.954 | Mlig455_055228 {REF} {Length: 2648} {TRANSSPLICED} {Pfam: Surp module [PF01805.22, score=51.3]; CID domain [PF04818.15, score=46.2]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=45.7]; RNA recognition motif [PF16367.7, score=20.9]} {Human: ENSG00000163714, U2SURP, U2 snRNP associated SURP domain containing, [RH, Score=407, Expect=2e-127]} {Mouse: ENSMUSG00000032407, U2surp, U2 snRNP-associated SURP domain containing, [RH, Score=409, Expect=4e-128]} {Dmel: FBgn0034572, CG9346, [RH, Score=379, Expect=9e-118]} {Celegans: WBGene00015581, C07H6.4, [RH, Score=315, Expect=4e-94]} {Smed: dd_Smed_v6_3029_0_1, dd_Smed_v6_3029_0_1, [RH, Score=476, Expect=2e-155]} {RNA1509_14951} {RNA1310_6191, RNA1509_14951} {RNA1509_14951, RNA815_1206.1} |
| 3. | MligTC455_26529 | 107 | 2.23 | Mlig455_000109 | Neo: - Age: - |
0.965 | 0.965 | - | - | - | - | - | Mlig455_000109 {REF} {Length: 3160} {Pfam: Integrase core domain [PF00665.28, score=49.1]; Integrase core domain [PF13683.8, score=24.3]; Aspartyl protease [PF13650.8, score=21.0]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=51.2, Expect=5e-06]} {Smed: dd_Smed_v6_1574_6_73, dd_Smed_v6_1574_6_73, [Score=85.5, Expect=2e-17]} {RNA1509_20640} {RNA1310_12286.2} {RNA815_6563} | |
| 4. | MligTC455_23473 | 1430 | 29.78 | Mlig455_029754, Mlig455_029850 | Neo: Irradiation Age: Down-Up-Up Region-enriched R5: 1.584/0.00000 |
0.959 | - | - | - | - | 0.959 | - | Mlig455_029754 {REF} {Length: 1187} {TRANSSPLICED} {RNA1509_18775} {RNA1310_51845, RNA1509_18775} {RNA1509_18775, RNA815_28456} Mlig455_029850 {REF} {Length: 1195} {TRANSSPLICED} {RNA1509_18775} {RNA1310_52654} {RNA815_28456} |
|
| 5. | MligTC455_15750 | 812 | 16.91 | Mlig455_056759 | Neo: Int S/G2/M Age: - |
GTF2F1 | 0.952 | - | - | - | - | 0.952 | - | Mlig455_056759 {REF} {Length: 3022} {TRANSSPLICED} {Pfam: Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) [PF05793.14, score=167.7]} {Human: ENSG00000125651, GTF2F1, general transcription factor IIF subunit 1, [RH, Score=94.4, Expect=1e-19]} {Mouse: ENSMUSG00000002658, Gtf2f1, general transcription factor IIF, polypeptide 1, [RH, Score=104, Expect=4e-23]} {Dmel: FBgn0010282, TfIIFalpha, Transcription factor IIFalpha, [RH, Score=85.9, Expect=4e-17]} {Celegans: WBGene00015296, C01F1.1, [RH, Score=96.7, Expect=7e-21]} {Smed: dd_Smed_v6_6621_0_1, dd_Smed_v6_6621_0_1, [Score=81.3, Expect=5e-16]} {RNA1509_11725} {RNA1310_8836} {RNA815_27798} |
| 6. | MligTC455_21604 | 1945 | 40.53 | Mlig455_025880, Mlig455_062261 | Neo: - Age: - Region-enriched R4: 1.157/0.00432 Regeneration-upregulated BL: 1.167 Regeneration-enriched BL: 1.167 |
HCFC1 | 0.952 | 0.952 | - | - | - | - | - | Mlig455_025880 {REF} {Length: 4784} {Pfam: Kelch motif [PF13854.8, score=102.0]; Galactose oxidase, central domain [PF13418.8, score=95.2]; Kelch motif [PF01344.27, score=80.4]; Galactose oxidase, central domain [PF13415.8, score=77.1]; Kelch motif [PF13964.8, score=71.3]; Kelch motif [PF07646.17, score=44.7]; Fibronectin type III domain [PF00041.23, score=32.8]} {Human: ENSG00000172534, HCFC1, host cell factor C1, [RH, Score=530, Expect=2e-164]} {Mouse: ENSMUSG00000031386, Hcfc1, host cell factor C1, [RH, Score=528, Expect=6e-164]} {Dmel: FBgn0039904, Hcf, Host cell factor, [RH, Score=479, Expect=7e-149]} {Celegans: WBGene00001827, hcf-1, HCF1 related; Host cell factor 1, [RH, Score=394, Expect=1e-123]} {Smed: dd_Smed_v6_6196_0_1, dd_Smed_v6_6196_0_1, [RH, Score=474, Expect=3e-151]} {RNA1509_45778, RNA1509_8904} {RNA1310_1686.1, RNA1509_45778, RNA1509_8904} {RNA1509_45778, RNA1509_8904, RNA815_4530} Mlig455_062261 {REF} {Length: 4851} {Pfam: Kelch motif [PF13854.8, score=102.1]; Galactose oxidase, central domain [PF13418.8, score=95.2]; Kelch motif [PF01344.27, score=80.6]; Galactose oxidase, central domain [PF13415.8, score=77.1]; Kelch motif [PF13964.8, score=71.3]; Kelch motif [PF07646.17, score=44.7]; Fibronectin type III domain [PF00041.23, score=32.8]} {Human: ENSG00000172534, HCFC1, host cell factor C1, [RH, Score=531, Expect=1e-164]} {Mouse: ENSMUSG00000031386, Hcfc1, host cell factor C1, [RH, Score=529, Expect=3e-164]} {Dmel: FBgn0039904, Hcf, Host cell factor, [RH, Score=479, Expect=5e-149]} {Celegans: WBGene00001827, hcf-1, HCF1 related; Host cell factor 1, [RH, Score=392, Expect=4e-123]} {Smed: dd_Smed_v6_6196_0_1, dd_Smed_v6_6196_0_1, [RH, Score=474, Expect=2e-151]} {RNA1509_19051} {RNA1310_1686.1, RNA1509_19051} {RNA1509_19051, RNA815_4530} |
| 7. | MligTC455_26530 | 62 | 1.3 | Mlig455_032083, Mlig455_038128 | Neo: - Age: - |
NYNRIN | 0.951 | 0.951 | - | - | - | - | - | Mlig455_032083 {REF} {Length: 992} {Pfam: Integrase core domain [PF00665.28, score=48.6]; Integrase core domain [PF13683.8, score=22.2]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=53.9, Expect=2e-07]} {Smed: dd_Smed_v6_1574_6_72, dd_Smed_v6_1574_6_72, [Score=96.7, Expect=3e-22]} {RNA1509_20640} {RNA1310_49260} {RNA815_6563} Mlig455_038128 {REF} {Length: 4311} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=78.1]; Integrase zinc binding domain [PF17921.3, score=52.5]; Integrase core domain [PF00665.28, score=46.4]; H2C2 zinc finger [PF09337.12, score=23.2]; Aspartyl protease [PF13650.8, score=21.6]; Integrase core domain [PF13683.8, score=21.3]; gag-polyprotein putative aspartyl protease [PF13975.8, score=21.2]; Retroviral aspartyl protease [PF00077.22, score=19.8]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=74.7, Expect=6e-13]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=149, Expect=6e-37]} {RNA1509_20640} {RNA1310_17413} {RNA815_6563} |
| 8. | MligTC455_29996 | 290 | 6.04 | Mlig455_042554 | Neo: - Age: logFC(26M/2M)=-0.341 |
FGA | 0.951 | - | - | - | - | - | 0.951 | Mlig455_042554 {REF} {Length: 2686} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=116.8]} {Human: ENSG00000171560, FGA, fibrinogen alpha chain, [Score=99.8, Expect=4e-21]; ENSG00000171557, FGG, fibrinogen gamma chain, [Score=95.5, Expect=3e-20]; ENSG00000136859, ANGPTL2, angiopoietin like 2, [Score=95.5, Expect=5e-22]} {Mouse: ENSMUSG00000028001, Fga, fibrinogen alpha chain, [Score=97.8, Expect=1e-20]; ENSMUSG00000033860, Fgg, fibrinogen gamma chain, [Score=96.7, Expect=8e-21]; ENSMUSG00000004105, Angptl2, angiopoietin-like 2, [Score=95.5, Expect=3e-20]} {Dmel: FBgn0051832, CG31832, [Score=86.3, Expect=9e-19]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=107, Expect=4e-24]} {RNA1509_42640} {RNA1310_14812, RNA1509_42640} {RNA1509_42640, RNA815_6799.1} |