M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_40799

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_40799 20 0.42 Mlig455_028943

Neo: -

Age: -

 DAPK1 Mlig455_028943 {REF} {Length: 4768} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=123.6]; Ankyrin repeats (many copies) [PF13637.8, score=89.9]; Ankyrin repeat [PF00023.32, score=82.3]; Ankyrin repeats (many copies) [PF13857.8, score=82.1]; Ankyrin repeat [PF13606.8, score=70.0]; Death domain [PF00531.24, score=54.6]} {Human: ENSG00000196730, DAPK1, death associated protein kinase 1, [Score=302, Expect=2e-85]} {Mouse: ENSMUSG00000021559, Dapk1, death associated protein kinase 1, [Score=298, Expect=5e-84]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=122, Expect=2e-28]} {Celegans: WBGene00003400, dapk-1, Death-associated protein kinase dapk-1, [Score=243, Expect=4e-66]} {Smed: dd_Smed_v6_9475_0_1, dd_Smed_v6_9475_0_1, [Score=593, Expect=0.0]} {RNA1509_32836} {RNA1310_28793} {RNA815_16120}

Cumulative graph for MligTC455_40799

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.515 0.674 1.00000 1.00000
RegionR2 1.972 0.674 0.99975 1.00000
RegionR3 2.233 0.674 0.99953 1.00000
RegionR4 0.816 0.674 0.99988 1.00000
RegionR5 1.201 0.674 0.99979 1.00000
RegionR6 -1.929 0.674 0.99986 1.00000
RegionR7 -1.918 0.674 0.99989 1.00000
RegionR8 -0.86 0.674 0.99991 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.698 0.674 0.99995 1.00000
RegenerationR2 -2.604 0.674 0.00088 0.04305
RegenerationR3 -2.097 0.674 0.99981 1.00000
RegenerationR4 -2.63 0.674 0.99955 1.00000
RegenerationR5 -3.309 0.674 0.99982 1.00000
RegenerationR6 -1.2 0.674 0.99993 1.00000
RegenerationBL -1.783 0.674 0.99990 1.00000
RegenerationTP 0.644 0.674 0.99989 1.00000


Genes with expression patterns similar to MligTC455_40799

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_40799 20 0.42 Mlig455_028943

Neo: -

Age: -

 DAPK1 2 - - 1.000 - 1.000 - Mlig455_028943 {REF} {Length: 4768} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=123.6]; Ankyrin repeats (many copies) [PF13637.8, score=89.9]; Ankyrin repeat [PF00023.32, score=82.3]; Ankyrin repeats (many copies) [PF13857.8, score=82.1]; Ankyrin repeat [PF13606.8, score=70.0]; Death domain [PF00531.24, score=54.6]} {Human: ENSG00000196730, DAPK1, death associated protein kinase 1, [Score=302, Expect=2e-85]} {Mouse: ENSMUSG00000021559, Dapk1, death associated protein kinase 1, [Score=298, Expect=5e-84]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=122, Expect=2e-28]} {Celegans: WBGene00003400, dapk-1, Death-associated protein kinase dapk-1, [Score=243, Expect=4e-66]} {Smed: dd_Smed_v6_9475_0_1, dd_Smed_v6_9475_0_1, [Score=593, Expect=0.0]} {RNA1509_32836} {RNA1310_28793} {RNA815_16120}
2. MligTC455_14409 53 1.11 Mlig455_030094

Neo: -

Age: -

 0.976 - - - - 0.976 - Mlig455_030094 {REF} {Length: 3142} {RNA1310_42856} {RNA815_35581}
3. MligTC455_09431 13 0.27 Mlig455_041993

Neo: -

Age: -

 0.972 - - - - 0.972 - Mlig455_041993 {REF} {Length: 1968} {RNA1509_46832} {RNA1310_63636} {RNA815_617.1}
4. MligTC455_38774 13 0.28 Mlig455_056173, Mlig455_058730

Neo: -

Age: -

 GALR2 0.968 - - - - 0.968 -

Mlig455_056173 {REF} {Length: 2381} {Pfam: Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=152.4]; 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=35.1]; Serpentine type 7TM GPCR chemoreceptor Srx [PF10328.11, score=21.4]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=20.1]} {Human: ENSG00000182687, GALR2, galanin receptor 2, [Score=50.4, Expect=4e-06]; ENSG00000180269, GPR139, G protein-coupled receptor 139, [Score=48.1, Expect=1e-05]} {Mouse: ENSMUSG00000020793, Galr2, galanin receptor 2, [Score=53.5, Expect=2e-07]} {Dmel: FBgn0033579, CG13229, [Score=179, Expect=1e-51]} {Celegans: WBGene00016428, dmsr-7, DroMyoSuppressin Receptor related, [Score=218, Expect=1e-66]} {Smed: dd_Smed_v6_15468_0_1, dd_Smed_v6_15468_0_1, [Score=248, Expect=2e-78]} {RNA1310_25407.1} {RNA815_38269}

Mlig455_058730 {REF} {Length: 2507} {Pfam: Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=123.1]; 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=31.5]; Serpentine type 7TM GPCR chemoreceptor Srx [PF10328.11, score=21.3]} {Dmel: FBgn0033579, CG13229, [Score=139, Expect=6e-37]} {Celegans: WBGene00016428, dmsr-7, DroMyoSuppressin Receptor related, [Score=175, Expect=5e-50]} {Smed: dd_Smed_v6_15468_0_2, dd_Smed_v6_15468_0_2, [Score=209, Expect=2e-63]} {RNA1310_25407.1} {RNA815_42074}
5. MligTC455_09338 21 0.44 Mlig455_046795, Mlig455_063514, Mlig455_069947

Neo: -

Age: -

 TBX2 0.955 - - - - 0.955 -

Mlig455_046795 {REF} {Length: 2289} {Pfam: T-box [PF00907.24, score=197.1]} {Human: ENSG00000121068, TBX2, T-box 2, [Score=177, Expect=2e-50]; ENSG00000089225, TBX5, T-box 5, [Score=174, Expect=3e-50]; ENSG00000149922, TBX6, T-box 6, [Score=174, Expect=5e-51]; ENSG00000121075, TBX4, T-box 4, [Score=173, Expect=6e-50]} {Mouse: ENSMUSG00000030699, Tbx6, T-box 6, [Score=177, Expect=2e-52]; ENSMUSG00000000093, Tbx2, T-box 2, [Score=177, Expect=1e-50]; ENSMUSG00000018263, Tbx5, T-box 5, [Score=174, Expect=2e-50]; ENSMUSG00000000094, Tbx4, T-box 4, [Score=174, Expect=3e-50]; ENSMUSG00000018604, Tbx3, T-box 3, [Score=172, Expect=1e-48]} {Dmel: FBgn0028789, Doc1, Dorsocross1, [Score=177, Expect=2e-53]} {Celegans: WBGene00006543, tbx-2, T-box protein 2, [Score=175, Expect=3e-52]} {Smed: dd_Smed_v6_9460_0_2, dd_Smed_v6_9460_0_2, [Score=183, Expect=3e-53]} {RNA1310_144455}

Mlig455_063514 {REF} {Length: 1925} {Pfam: T-box [PF00907.24, score=56.5]} {Human: ENSG00000121068, TBX2, T-box 2, [Score=78.6, Expect=2e-17]; ENSG00000149922, TBX6, T-box 6, [Score=76.3, Expect=6e-17]; ENSG00000121075, TBX4, T-box 4, [Score=74.7, Expect=5e-16]; ENSG00000089225, TBX5, T-box 5, [Score=74.7, Expect=3e-16]} {Mouse: ENSMUSG00000000093, Tbx2, T-box 2, [Score=79.0, Expect=1e-17]; ENSMUSG00000030699, Tbx6, T-box 6, [Score=77.0, Expect=5e-17]} {Dmel: FBgn0028789, Doc1, Dorsocross1, [Score=77.0, Expect=3e-17]} {Celegans: WBGene00006543, tbx-2, T-box protein 2, [Score=72.0, Expect=1e-15]} {Smed: dd_Smed_v6_11693_0_1, dd_Smed_v6_11693_0_1, [Score=69.3, Expect=1e-14]} {RNA1310_144455}

Mlig455_069947 {REF} {Length: 2228} {Pfam: T-box [PF00907.24, score=197.1]} {Human: ENSG00000121068, TBX2, T-box 2, [Score=177, Expect=2e-50]; ENSG00000089225, TBX5, T-box 5, [Score=174, Expect=3e-50]; ENSG00000149922, TBX6, T-box 6, [Score=174, Expect=5e-51]; ENSG00000121075, TBX4, T-box 4, [Score=173, Expect=6e-50]} {Mouse: ENSMUSG00000030699, Tbx6, T-box 6, [Score=177, Expect=2e-52]; ENSMUSG00000000093, Tbx2, T-box 2, [Score=177, Expect=1e-50]; ENSMUSG00000018263, Tbx5, T-box 5, [Score=174, Expect=2e-50]; ENSMUSG00000000094, Tbx4, T-box 4, [Score=174, Expect=3e-50]; ENSMUSG00000018604, Tbx3, T-box 3, [Score=172, Expect=1e-48]} {Dmel: FBgn0028789, Doc1, Dorsocross1, [Score=177, Expect=2e-53]} {Celegans: WBGene00006543, tbx-2, T-box protein 2, [Score=175, Expect=3e-52]} {Smed: dd_Smed_v6_9460_0_2, dd_Smed_v6_9460_0_2, [Score=183, Expect=3e-53]} {RNA1310_144455}
6. MligTC455_46297 24 0.49 Mlig455_035766

Neo: -

Age: -

 0.955 - - - - 0.955 - Mlig455_035766 {REF} {Length: 2581} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=64.3]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=21.4]} {Smed: dd_Smed_v6_21465_0_1, dd_Smed_v6_21465_0_1, [Score=48.1, Expect=6e-06]} {RNA1310_25666} {RNA815_22942}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA