M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_40826

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_40826 837 17.45 Mlig455_032240

Neo: -

Age: -

 DNAAF1 Mlig455_032240 {REF} {Length: 2091} {TRANSSPLICED} {Pfam: Leucine Rich repeats (2 copies) [PF12799.9, score=66.2]; Leucine-rich repeat [PF14580.8, score=59.0]; Leucine rich repeat [PF13855.8, score=57.5]} {Human: ENSG00000154099, DNAAF1, dynein axonemal assembly factor 1, [RH, Score=287, Expect=5e-89]} {Mouse: ENSMUSG00000031831, Dnaaf1, dynein, axonemal assembly factor 1, [RH, Score=280, Expect=3e-87]} {Dmel: FBgn0023090, dtr, defective transmitter release, [RH, Score=228, Expect=3e-65]} {Celegans: WBGene00015516, C06A8.6, [Score=82.8, Expect=4e-17]} {Smed: dd_Smed_v6_9766_0_1, dd_Smed_v6_9766_0_1, [RH, Score=332, Expect=5e-108]} {RNA1509_10771, RNA1509_28210, RNA1509_30991} {RNA1310_10038, RNA1509_10771, RNA1509_28210, RNA1509_30991} {RNA1509_10771, RNA1509_28210, RNA1509_30991, RNA815_4722.1}

Cumulative graph for MligTC455_40826

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.63 4.37 0.21378 0.85490
RegionR2 0.58 4.37 0.20883 0.57204
RegionR3 0.267 4.37 0.48165 0.98335
RegionR4 0.184 4.37 0.67285 0.96875
RegionR5 -0.072 4.37 0.84927 1.00000
RegionR6 0.217 4.37 0.57884 1.00000
RegionR7 0.369 4.37 0.44576 1.00000
RegionR8 0.085 4.37 0.89261 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.001 4.37 0.57104 1.00000
RegenerationR2 0.321 4.37 0.35683 0.78663
RegenerationR3 0.42 4.37 0.28979 0.72161
RegenerationR4 0.176 4.37 0.66041 0.93823
RegenerationR5 0.301 4.37 0.41800 0.81013
RegenerationR6 -0.204 4.37 0.61613 0.87839
RegenerationBL -0.09 4.37 0.85245 1.00000
RegenerationTP -0.814 4.37 0.16043 0.58909


Genes with expression patterns similar to MligTC455_40826

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_40826 837 17.45 Mlig455_032240

Neo: -

Age: -

 DNAAF1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_032240 {REF} {Length: 2091} {TRANSSPLICED} {Pfam: Leucine Rich repeats (2 copies) [PF12799.9, score=66.2]; Leucine-rich repeat [PF14580.8, score=59.0]; Leucine rich repeat [PF13855.8, score=57.5]} {Human: ENSG00000154099, DNAAF1, dynein axonemal assembly factor 1, [RH, Score=287, Expect=5e-89]} {Mouse: ENSMUSG00000031831, Dnaaf1, dynein, axonemal assembly factor 1, [RH, Score=280, Expect=3e-87]} {Dmel: FBgn0023090, dtr, defective transmitter release, [RH, Score=228, Expect=3e-65]} {Celegans: WBGene00015516, C06A8.6, [Score=82.8, Expect=4e-17]} {Smed: dd_Smed_v6_9766_0_1, dd_Smed_v6_9766_0_1, [RH, Score=332, Expect=5e-108]} {RNA1509_10771, RNA1509_28210, RNA1509_30991} {RNA1310_10038, RNA1509_10771, RNA1509_28210, RNA1509_30991} {RNA1509_10771, RNA1509_28210, RNA1509_30991, RNA815_4722.1}
2. MligTC455_14050 356 7.42 Mlig455_052818

Neo: -

Age: -

 2.367 0.708 - - 0.957 - 0.702 Mlig455_052818 {REF} {Length: 2718} {Pfam: Ubiquitin family [PF00240.25, score=51.8]; Ubiquitin-2 like Rad60 SUMO-like [PF11976.10, score=26.9]} {RNA1509_11983} {RNA1310_7335} {RNA815_858}
3. MligTC455_24367 782 16.29 Mlig455_012514

Neo: -

Age: logFC(26M/2M)=1.445

Region-enriched R5: 3.754/0.00000

 1.712 - 0.749 - 0.963 - - Mlig455_012514 {REF} {Length: 1696} {RNA1509_622} {RNA1310_48164} {RNA815_5272.1}
4. MligTC455_24370 3170 66.04 Mlig455_001601, Mlig455_068601

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=1.048

Region-enriched R5: 3.766/0.00000

 1.7 - 0.735 - 0.965 - -

Mlig455_001601 {REF} {Length: 4436} {RNA1509_622} {RNA1310_17391} {RNA815_5272.1}

Mlig455_068601 {REF} {Length: 1960} {TRANSSPLICED} {RNA1509_51863, RNA1509_622} {RNA1310_17391, RNA1509_51863} {RNA1509_51863, RNA815_9863}
5. MligTC455_21863 894 18.63 Mlig455_019361

Neo: -

Age: -

 1.685 - - 0.961 - 0.724 - Mlig455_019361 {REF} {Length: 2222} {Pfam: Basic region leucine zipper [PF07716.17, score=33.3]; bZIP Maf transcription factor [PF03131.19, score=21.1]; Spermatogenesis-associated protein 24 [PF15175.8, score=19.8]} {RNA1509_16609} {RNA1310_14643.1} {RNA815_5867.1}
6. MligTC455_24368 2421 50.43 Mlig455_032397, Mlig455_037075

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=2.294

Region-enriched R5: 3.751/0.00000

 1.676 - 0.711 - 0.965 - -

Mlig455_032397 {REF} {Length: 6720} {RNA1509_622} {RNA1310_48164} {RNA815_5272.1}

Mlig455_037075 {REF} {Length: 2543} {TRANSSPLICED} {RNA1509_622} {RNA1310_48164} {RNA815_5272.1}
7. MligTC455_24371 8290 172.71 Mlig455_009641, Mlig455_030633, Mlig455_068612

Neo: Irradiation

Age: Down-Up-Up, logFC(26M/2M)=0.695

Region-enriched R5: 3.585/0.00000

 1.67 - 0.704 - 0.966 - -

Mlig455_009641 {REF} {Length: 5849} {Pfam: Pox virus Ag35 surface protein [PF03286.16, score=24.2]} {RNA1509_38297, RNA1509_622} {RNA1310_48164, RNA1509_38297} {RNA1509_38297, RNA815_5272.1}

Mlig455_030633 {REF} {Length: 8830} {RNA1509_622} {RNA1310_17391} {RNA815_5272.1}

Mlig455_068612 {REF} {Length: 11409} {RNA1509_13000, RNA1509_622} {RNA1310_48164, RNA1509_13000} {RNA1509_13000, RNA815_5272.1}
8. MligTC455_24376 493 10.28 Mlig455_065563

Neo: Irradiation

Age: logFC(26M/2M)=0.585

Region-enriched R5: 4.147/0.00001

 0.966 - - - 0.966 - - Mlig455_065563 {REF} {Length: 1382} {RNA1509_38297} {RNA1310_17391} {RNA815_5272.1}
9. MligTC455_18628 960 20 Mlig455_022736

Neo: -

Age: logFC(26M/2M)=0.412

Region-enriched R2: 3.411/0.00867

 SCUBE2 0.965 - - - - - 0.965 Mlig455_022736 {REF} {Length: 3064} {Pfam: EGF-like domain [PF00008.29, score=27.8]; Subtelomeric Variable Open Reading frame [PF17410.4, score=18.9]} {Human: ENSG00000175356, SCUBE2, signal peptide, CUB domain and EGF like domain containing 2, [Score=51.6, Expect=8e-07]} {RNA1509_57654} {RNA1310_12051.1} {RNA815_5009.1}
10. MligTC455_12000 50 1.04 Mlig455_052855

Neo: Int S/G2/M

Age: -

 0.961 - - - - 0.961 - Mlig455_052855 {REF} {Length: 1032} {NoTransDecoderORF} {RNA1310_82013}
11. MligTC455_03726 398 8.29 Mlig455_067123

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.557

Region-enriched R3: 3.154/0.00000

 0.959 - - - 0.959 - - Mlig455_067123 {REF} {Length: 2830} {Pfam: Group 7 allergen [PF16984.7, score=97.0]} {RNA1509_43789, RNA1509_5662} {RNA1310_3902, RNA1509_43789} {RNA1509_43789, RNA815_13325}
12. MligTC455_06926 284 5.92 Mlig455_051683

Neo: -

Age: -

Region-enriched R5: 2.876/0.02561

 C11orf54 0.959 - - - 0.959 - - Mlig455_051683 {REF} {Length: 1583} {Pfam: Domain of Unknown Function (DUF1907) [PF08925.13, score=227.9]} {Human: ENSG00000182919, C11orf54, chromosome 11 open reading frame 54, [RH, Score=174, Expect=2e-51]} {Mouse: ENSMUSG00000031938, 4931406C07Rik, RIKEN cDNA 4931406C07 gene, [RH, Score=176, Expect=2e-52]} {Dmel: FBgn0035189, CG9119, [RH, Score=148, Expect=1e-41]} {Celegans: WBGene00016046, C24B5.4, [RH, Score=146, Expect=4e-41]} {Smed: dd_Smed_v6_1733_0_2, dd_Smed_v6_1733_0_2, [RH, Score=179, Expect=5e-54]} {RNA1509_56223} {RNA1310_31002, RNA1509_56223} {RNA1509_56223, RNA815_24062}
13. MligTC455_24369 2070 43.12 Mlig455_043029

Neo: -

Age: Down-Up-Down

Region-enriched R5: 3.687/0.00000

 0.959 - - - 0.959 - - Mlig455_043029 {REF} {Length: 5809} {RNA1509_622} {RNA1310_48164} {RNA815_5272.1}
14. MligTC455_24373 5367 111.81 Mlig455_012515, Mlig455_021061, Mlig455_036832, Mlig455_037063, Mlig455_037064, Mlig455_037074, Mlig455_037076

Neo: Irradiation

Age: -

Region-enriched R5: 3.738/0.00000

 0.959 - - - 0.959 - -

Mlig455_012515 {REF} {Length: 999} {NoTransDecoderORF} {RNA1509_622} {RNA1310_48164} {RNA815_5272.1}

Mlig455_021061 {REF} {Length: 618} {NoTransDecoderORF} {RNA1509_51928} {RNA1310_48164} {RNA815_9863}

Mlig455_036832 {REF} {Length: 542} {NoTransDecoderORF} {RNA1509_622} {RNA1310_48164} {RNA815_5272.1}

Mlig455_037063 {REF} {Length: 875} {TRANSSPLICED} {RNA1509_29604} {RNA1310_17391} {RNA815_9863}

Mlig455_037064 {REF} {Length: 400} {NoTransDecoderORF} {RNA1509_51928} {RNA1310_48164} {RNA815_9863}

Mlig455_037074 {REF} {Length: 1945} {TRANSSPLICED} {RNA1509_622} {RNA1310_48164} {RNA815_5272.1}

Mlig455_037076 {REF} {Length: 264} {NoTransDecoderORF} {RNA1509_51928} {RNA1310_48164} {RNA815_9863}
15. MligTC455_29817 447 9.31 Mlig455_067318

Neo: -

Age: logFC(26M/2M)=-0.198

 RNF31 0.957 - - - - 0.957 - Mlig455_067318 {REF} {Length: 8181} {Pfam: E3 Ubiquitin Ligase RBR C-terminal domain [PF18091.3, score=33.3]} {Human: ENSG00000092098, RNF31, ring finger protein 31, [Score=168, Expect=2e-41]; ENSG00000285152, RNF31, ring finger protein 31, [Score=168, Expect=2e-41]; ENSG00000284845, AL136295.10, novel transcript, [Score=160, Expect=8e-41]; ENSG00000259529, AL136295.5, novel transcript, [Score=160, Expect=8e-41]} {Mouse: ENSMUSG00000047098, Rnf31, ring finger protein 31, [Score=169, Expect=4e-42]} {Dmel: FBgn0031857, LUBEL, Linear Ubiquitin E3 ligase, [Score=147, Expect=3e-35]} {Celegans: WBGene00001690, grd-1, GRounDhog (Hedgehog-like family), [Score=55.5, Expect=3e-07]} {Smed: dd_Smed_v6_7487_0_1, dd_Smed_v6_7487_0_1, [Score=97.1, Expect=2e-20]} {RNA1509_25307} {RNA1310_7993, RNA1509_25307} {RNA1509_25307, RNA815_9771}
16. MligTC455_30529 90 1.88 Mlig455_008907

Neo: -

Age: -

 0.957 - - - 0.957 - - Mlig455_008907 {REF} {Length: 1939} {Pfam: Dynein light chain type 1 [PF01221.20, score=38.5]; EF-hand domain pair [PF13499.8, score=21.6]; EF hand [PF00036.34, score=20.2]; EF-hand domain [PF14658.8, score=20.1]; EF-hand domain [PF13405.8, score=18.5]} {Smed: dd_Smed_v6_6707_0_3, dd_Smed_v6_6707_0_3, [Score=93.6, Expect=7e-25]} {RNA1509_344} {RNA1310_2699} {RNA815_17450}
17. MligTC455_10785 347 7.24 Mlig455_030825

Neo: -

Age: -

 0.955 - - - 0.955 - - Mlig455_030825 {REF} {Length: 570} {Pfam: Essential protein Yae1, N terminal [PF09811.11, score=77.3]}
18. MligTC455_20189 745 15.51 Mlig455_065227

Neo: -

Age: -

 ANO2 0.954 - - - 0.954 - - Mlig455_065227 {REF} {Length: 6049} {Pfam: Calcium-activated chloride channel [PF04547.14, score=496.4]; Dimerisation domain of Ca+-activated chloride-channel, anoctamin [PF16178.7, score=104.2]} {Human: ENSG00000047617, ANO2, anoctamin 2, [RH, Score=539, Expect=7e-176]} {Mouse: ENSMUSG00000038115, Ano2, anoctamin 2, [RH, Score=533, Expect=6e-174]} {Dmel: FBgn0036235, CG6938, [RH, Score=557, Expect=0.0]} {Celegans: WBGene00010138, anoh-1, Anoctamin, [Score=209, Expect=2e-56]} {Smed: dd_Smed_v6_4761_0_1, dd_Smed_v6_4761_0_1, [Score=460, Expect=3e-148]} {RNA1509_13805} {RNA1310_2805.1, RNA1509_13805} {RNA1509_13805, RNA815_1328}
19. MligTC455_10918 422 8.79 Mlig455_047587, Mlig455_047602

Neo: -

Age: -

 ASIC2 0.953 - - - 0.953 - -

Mlig455_047587 {REF} {Length: 2857} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=295.2]} {Human: ENSG00000108684, ASIC2, acid sensing ion channel subunit 2, [RH, Score=139, Expect=2e-34]; ENSG00000110881, ASIC1, acid sensing ion channel subunit 1, [RH, Score=133, Expect=9e-33]} {Mouse: ENSMUSG00000020704, Asic2, acid-sensing (proton-gated) ion channel 2, [RH, Score=137, Expect=3e-34]; ENSMUSG00000023017, Asic1, acid-sensing (proton-gated) ion channel 1, [RH, Score=137, Expect=4e-34]} {Dmel: FBgn0052792, ppk8, pickpocket 8, [RH, Score=65.9, Expect=5e-11]} {Celegans: WBGene00012116, del-4, DEgenerin Like, [RH, Score=162, Expect=2e-43]} {Smed: dd_Smed_v6_11787_0_1, dd_Smed_v6_11787_0_1, [Score=387, Expect=3e-129]} {RNA1509_23163} {RNA1310_6510} {RNA815_3823}

Mlig455_047602 {REF} {Length: 2812} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=295.2]} {Human: ENSG00000108684, ASIC2, acid sensing ion channel subunit 2, [RH, Score=139, Expect=2e-34]; ENSG00000110881, ASIC1, acid sensing ion channel subunit 1, [RH, Score=133, Expect=9e-33]} {Mouse: ENSMUSG00000020704, Asic2, acid-sensing (proton-gated) ion channel 2, [RH, Score=137, Expect=3e-34]; ENSMUSG00000023017, Asic1, acid-sensing (proton-gated) ion channel 1, [RH, Score=137, Expect=4e-34]} {Dmel: FBgn0052792, ppk8, pickpocket 8, [RH, Score=65.9, Expect=5e-11]} {Celegans: WBGene00012116, del-4, DEgenerin Like, [RH, Score=162, Expect=2e-43]} {Smed: dd_Smed_v6_11787_0_1, dd_Smed_v6_11787_0_1, [Score=387, Expect=3e-129]} {RNA1509_23163} {RNA1310_6510, RNA1509_23163} {RNA1509_23163, RNA815_3823}
20. MligTC455_08642 52 1.07 Mlig455_050746, Mlig455_062726

Neo: -

Age: -

 0.952 - - - 0.952 - -

Mlig455_050746 {REF} {Length: 1743} {Pfam: Transposase protein [PF12017.10, score=31.7]; THAP domain [PF05485.14, score=30.4]} {RNA1509_2515} {RNA1310_3400} {RNA815_5315}

Mlig455_062726 {REF} {Length: 589} {RNA1509_2515} {RNA1310_11307} {RNA815_9263}
21. MligTC455_53749 267 5.57 Mlig455_025332

Neo: -

Age: Down-Down-Up

Region-enriched R3: 8.984/0.00000

 0.952 - - - 0.952 - - Mlig455_025332 {REF} {Length: 1716} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=38.6]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=19.0]} {RNA1509_20092} {RNA1310_25074} {RNA815_35763}
22. MligTC455_40647 511 10.64 Mlig455_055717

Neo: -

Age: -

 TOR1B 0.951 - 0.951 - - - - Mlig455_055717 {REF} {Length: 3266} {Pfam: Torsin [PF06309.13, score=237.4]; AAA domain (dynein-related subfamily) [PF07728.16, score=46.2]; ATPase family associated with various cellular activities (AAA) [PF00004.31, score=41.2]; AAA domain [PF13401.8, score=37.2]; AAA domain (Cdc48 subfamily) [PF07724.16, score=30.9]; Sigma-54 interaction domain [PF00158.28, score=27.0]; Cytidylate kinase [PF02224.20, score=25.1]; PhoH-like protein [PF02562.18, score=24.3]; RNA helicase [PF00910.24, score=22.0]; Type III restriction enzyme, res subunit [PF04851.17, score=21.3]; IstB-like ATP binding protein [PF01695.19, score=21.2]; AAA domain [PF13238.8, score=19.1]; Threonylcarbamoyl adenosine biosynthesis protein TsaE [PF02367.19, score=18.8]; NB-ARC domain [PF00931.24, score=18.5]} {Human: ENSG00000136816, TOR1B, torsin family 1 member B, [Score=201, Expect=3e-58]; ENSG00000136827, TOR1A, torsin family 1 member A, [Score=196, Expect=2e-56]} {Mouse: ENSMUSG00000026848, Tor1b, torsin family 1, member B, [Score=202, Expect=7e-59]} {Dmel: FBgn0025615, Torsin, [Score=142, Expect=4e-37]} {Celegans: WBGene00003870, ooc-5, Torsin-like protein, [Score=192, Expect=2e-55]} {Smed: dd_Smed_v6_7561_0_1, dd_Smed_v6_7561_0_1, [Score=173, Expect=2e-48]} {RNA1509_20868} {RNA1310_9112.2} {RNA815_7575}
23. MligTC455_42863 4143 86.31 Mlig455_015957

Neo: -

Age: -

 CCDC65 0.951 - - - - 0.951 - Mlig455_015957 {REF} {Length: 1928} {TRANSSPLICED} {Pfam: Sperm tail [PF14772.8, score=82.2]; Sperm tail C-terminal domain [PF14775.8, score=25.0]} {Human: ENSG00000139537, CCDC65, coiled-coil domain containing 65, [RH, Score=401, Expect=3e-135]} {Mouse: ENSMUSG00000003354, Ccdc65, coiled-coil domain containing 65, [RH, Score=420, Expect=1e-142]} {Dmel: FBgn0050259, CG30259, [RH, Score=166, Expect=8e-45]} {Smed: dd_Smed_v6_6152_0_1, dd_Smed_v6_6152_0_1, [RH, Score=525, Expect=0.0]} {RNA1509_10456, RNA1509_14724, RNA1509_1709, RNA1509_21982, RNA1509_37196} {RNA1310_14593, RNA1509_10456, RNA1509_14724, RNA1509_1709, RNA1509_21982, RNA1509_37196} {RNA1509_10456, RNA1509_14724, RNA1509_1709, RNA1509_21982, RNA1509_37196, RNA815_5330}
24. MligTC455_12063 57 1.18 Mlig455_008406

Neo: -

Age: -

 0.95 - - - 0.950 - - Mlig455_008406 {REF} {Length: 720} {NoTransDecoderORF} {RNA1509_35335} {RNA1310_11566}
25. MligTC455_26425 937 19.51 Mlig455_065703

Neo: -

Age: -

Regeneration-upregulated BL: 2.982

Regeneration-enriched BL: 2.982

 0.95 - - - 0.950 - - Mlig455_065703 {REF} {Length: 4233} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=56.6]} {Smed: dd_Smed_v6_6819_0_1, dd_Smed_v6_6819_0_1, [Score=137, Expect=2e-35]} {RNA1509_3589} {RNA1310_6060} {RNA815_6010.2}
26. MligTC455_50911 1066 22.2 Mlig455_051312

Neo: -

Age: -

 PPP1R3A 0.95 - - - 0.950 - - Mlig455_051312 {REF} {Length: 2381} {Pfam: Carbohydrate/starch-binding module (family 21) [PF03370.15, score=95.5]; Starch/carbohydrate-binding module (family 53) [PF16760.7, score=49.0]} {Human: ENSG00000154415, PPP1R3A, protein phosphatase 1 regulatory subunit 3A, [Score=104, Expect=1e-23]} {Mouse: ENSMUSG00000042717, Ppp1r3a, protein phosphatase 1, regulatory subunit 3A, [RH, Score=105, Expect=3e-24]} {Dmel: FBgn0036862, Gbs-76A, Glycogen binding subunit 76A, [Score=130, Expect=6e-33]} {Celegans: WBGene00019211, H18N23.2, Protein phosphatase 1 regulatory subunit, [Score=87.8, Expect=4e-19]} {Smed: dd_Smed_v6_4959_0_1, dd_Smed_v6_4959_0_1, [Score=157, Expect=2e-45]} {RNA1509_20565, RNA1509_34301} {RNA1310_10714, RNA1509_34301} {RNA1509_34301, RNA815_3667.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA