M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_41066

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_41066 461 9.59 Mlig455_034638, Mlig455_062636

Neo: -

Age: -

Mlig455_034638 {REF} {Length: 2814} {RNA1509_43608} {RNA1310_9439.1} {RNA815_10600}

Mlig455_062636 {REF} {Length: 3468} {TRANSSPLICED} {Pfam: F-box-like [PF12937.9, score=29.3]; F-box domain [PF00646.35, score=24.8]} {RNA1509_37658, RNA1509_43608} {RNA1310_9439.1, RNA1509_37658, RNA1509_43608} {RNA1509_37658, RNA1509_43608, RNA815_10600}

Cumulative graph for MligTC455_41066

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.368 3.524 0.31037 0.95961
RegionR2 0.492 3.524 0.48401 0.86754
RegionR3 0.129 3.524 0.82221 1.00000
RegionR4 -0.89 3.524 0.16821 0.43048
RegionR5 0.508 3.524 0.30205 0.63783
RegionR6 0.223 3.524 0.68702 1.00000
RegionR7 -0.223 3.524 0.74808 1.00000
RegionR8 1.13 3.524 0.08507 0.55257

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -5.194 3.524 0.33398 1.00000
RegenerationR2 -0.93 3.524 0.17675 0.61736
RegenerationR3 -0.5 3.524 0.49148 0.85446
RegenerationR4 0.013 3.524 0.98338 1.00000
RegenerationR5 -0.599 3.524 0.38464 0.78876
RegenerationR6 -0.328 3.524 0.64734 0.89707
RegenerationBL 0.689 3.524 0.30365 0.66754
RegenerationTP 0.915 3.524 0.20236 0.64400


Genes with expression patterns similar to MligTC455_41066

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_41066 461 9.59 Mlig455_034638, Mlig455_062636

Neo: -

Age: -

 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_034638 {REF} {Length: 2814} {RNA1509_43608} {RNA1310_9439.1} {RNA815_10600}

Mlig455_062636 {REF} {Length: 3468} {TRANSSPLICED} {Pfam: F-box-like [PF12937.9, score=29.3]; F-box domain [PF00646.35, score=24.8]} {RNA1509_37658, RNA1509_43608} {RNA1310_9439.1, RNA1509_37658, RNA1509_43608} {RNA1509_37658, RNA1509_43608, RNA815_10600}
2. MligTC455_47044 361 7.53 Mlig455_041546

Neo: -

Age: -

Region-enriched R5: 1.406/0.01737

 0.978 - - - - 0.978 - Mlig455_041546 {REF} {Length: 500} {TRANSSPLICED} {RNA1509_56604} {RNA1310_60152.1} {RNA815_39626}
3. MligTC455_18855 80 1.68 Mlig455_041548, Mlig455_053109

Neo: -

Age: Down-Up-Up

 RAB33B 0.977 - - - - 0.977 -

Mlig455_041548 {REF} {Length: 1723} {Pfam: Ras family [PF00071.24, score=163.2]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=108.9]; ADP-ribosylation factor family [PF00025.23, score=56.8]; 50S ribosome-binding GTPase [PF01926.25, score=28.9]; Gtr1/RagA G protein conserved region [PF04670.14, score=27.0]; Signal recognition particle receptor beta subunit [PF09439.12, score=25.5]; G-protein alpha subunit [PF00503.22, score=25.4]; Elongation factor Tu GTP binding domain [PF00009.29, score=21.2]} {Human: ENSG00000172007, RAB33B, RAB33B, member RAS oncogene family, [RH, Score=274, Expect=3e-93]} {Mouse: ENSMUSG00000027739, Rab33b, RAB33B, member RAS oncogene family, [RH, Score=275, Expect=1e-93]} {Dmel: FBgn0031882, Rab30, [Score=164, Expect=2e-50]} {Celegans: WBGene00004283, rab-33, Ras-related protein Rab-33, [RH, Score=239, Expect=8e-79]} {Smed: dd_Smed_v6_7279_0_1, dd_Smed_v6_7279_0_1, [RH, Score=233, Expect=9e-78]} {RNA1509_19807} {RNA1310_17789.1} {RNA815_7266}

Mlig455_053109 {REF} {Length: 1716} {Pfam: Ras family [PF00071.24, score=163.2]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=108.9]; ADP-ribosylation factor family [PF00025.23, score=56.8]; 50S ribosome-binding GTPase [PF01926.25, score=28.9]; Gtr1/RagA G protein conserved region [PF04670.14, score=26.9]; G-protein alpha subunit [PF00503.22, score=25.5]; Signal recognition particle receptor beta subunit [PF09439.12, score=25.4]; Elongation factor Tu GTP binding domain [PF00009.29, score=21.2]} {Human: ENSG00000172007, RAB33B, RAB33B, member RAS oncogene family, [RH, Score=274, Expect=4e-93]} {Mouse: ENSMUSG00000027739, Rab33b, RAB33B, member RAS oncogene family, [RH, Score=275, Expect=1e-93]} {Dmel: FBgn0031882, Rab30, [Score=164, Expect=2e-50]} {Celegans: WBGene00004283, rab-33, Ras-related protein Rab-33, [RH, Score=239, Expect=6e-79]} {Smed: dd_Smed_v6_7279_0_1, dd_Smed_v6_7279_0_1, [RH, Score=234, Expect=7e-78]} {RNA1509_15092} {RNA1310_17789.1, RNA1509_15092} {RNA1509_15092, RNA815_7266}
4. MligTC455_41602 701 14.6 Mlig455_000984

Neo: Int S/G2/M

Age: -

Region-enriched R5: 1.342/0.02989

 0.969 - - - - 0.969 - Mlig455_000984 {REF} {Length: 2204} {TRANSSPLICED} {Pfam: DCC1-like thiol-disulfide oxidoreductase [PF04134.14, score=75.2]} {RNA1509_10364} {RNA1310_36209} {RNA815_17788.1}
5. MligTC455_52505 1881 39.18 Mlig455_037232, Mlig455_037243

Neo: Int S/G2/M

Age: -

Region-enriched R4: 1.333/0.02316
Region-enriched R5: 1.143/0.02263

 METTL1 0.966 - - - - 0.966 -

Mlig455_037232 {REF} {Length: 909} {TRANSSPLICED} {Pfam: Putative methyltransferase [PF02390.19, score=174.8]; Methyltransferase domain [PF13649.8, score=23.1]; Methyltransferase domain [PF08241.14, score=20.5]} {Human: ENSG00000037897, METTL1, methyltransferase like 1, [RH, Score=280, Expect=2e-94]} {Mouse: ENSMUSG00000006732, Mettl1, methyltransferase like 1, [RH, Score=290, Expect=1e-98]} {Dmel: FBgn0025629, CG4045, [RH, Score=282, Expect=9e-96]} {Celegans: WBGene00012205, W02B12.10, tRNA (guanine-N(7)-)-methyltransferase, [RH, Score=285, Expect=6e-97]} {Smed: dd_Smed_v6_8358_0_1, dd_Smed_v6_8358_0_1, [RH, Score=293, Expect=2e-100]} {RNA1509_35654} {RNA1310_37064} {RNA815_19168}

Mlig455_037243 {REF} {Length: 909} {TRANSSPLICED} {Pfam: Putative methyltransferase [PF02390.19, score=174.8]; Methyltransferase domain [PF13649.8, score=23.1]; Methyltransferase domain [PF08241.14, score=20.5]} {Human: ENSG00000037897, METTL1, methyltransferase like 1, [RH, Score=280, Expect=2e-94]} {Mouse: ENSMUSG00000006732, Mettl1, methyltransferase like 1, [RH, Score=290, Expect=1e-98]} {Dmel: FBgn0025629, CG4045, [RH, Score=282, Expect=9e-96]} {Celegans: WBGene00012205, W02B12.10, tRNA (guanine-N(7)-)-methyltransferase, [RH, Score=285, Expect=6e-97]} {Smed: dd_Smed_v6_8358_0_1, dd_Smed_v6_8358_0_1, [RH, Score=293, Expect=2e-100]} {RNA1509_28791, RNA1509_34156, RNA1509_35654, RNA1509_58477} {RNA1310_37064, RNA1509_28791, RNA1509_34156, RNA1509_35654, RNA1509_58477} {RNA1509_28791, RNA1509_34156, RNA1509_35654, RNA1509_58477, RNA815_19168}
6. MligTC455_52504 548 11.41 Mlig455_004410

Neo: -

Age: -

 METTL1 0.959 - - - - 0.959 - Mlig455_004410 {REF} {Length: 3572} {Pfam: Putative methyltransferase [PF02390.19, score=174.8]; Methyltransferase domain [PF13649.8, score=23.1]; Methyltransferase domain [PF08241.14, score=20.5]} {Human: ENSG00000037897, METTL1, methyltransferase like 1, [RH, Score=280, Expect=2e-94]} {Mouse: ENSMUSG00000006732, Mettl1, methyltransferase like 1, [RH, Score=290, Expect=1e-98]} {Dmel: FBgn0025629, CG4045, [RH, Score=282, Expect=9e-96]} {Celegans: WBGene00012205, W02B12.10, tRNA (guanine-N(7)-)-methyltransferase, [RH, Score=285, Expect=6e-97]} {Smed: dd_Smed_v6_8358_0_1, dd_Smed_v6_8358_0_1, [RH, Score=293, Expect=2e-100]} {RNA1509_35654} {RNA1310_37064} {RNA815_19168}
7. MligTC455_49638 799 16.64 Mlig455_013473

Neo: -

Age: Down-Up-Down

 0.951 - - - 0.951 - - Mlig455_013473 {REF} {Length: 1363} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_19889, RNA1509_27962, RNA1509_48033} {RNA1310_36116, RNA1509_19889, RNA1509_27962, RNA1509_48033} {RNA1509_19889, RNA1509_27962, RNA1509_48033, RNA815_19281}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA