M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_41273

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_41273 558 11.63 Mlig455_037995

Neo: -

Age: -

Region-enriched R5: 1.142/0.04701

 SPSB1 Mlig455_037995 {REF} {Length: 3087} {TRANSSPLICED} {Pfam: SPRY domain [PF00622.30, score=57.4]; SOCS box [PF07525.18, score=29.4]} {Human: ENSG00000171621, SPSB1, splA/ryanodine receptor domain and SOCS box containing 1, [RH, Score=326, Expect=2e-110]; ENSG00000175093, SPSB4, splA/ryanodine receptor domain and SOCS box containing 4, [RH, Score=316, Expect=1e-106]} {Mouse: ENSMUSG00000039911, Spsb1, splA/ryanodine receptor domain and SOCS box containing 1, [RH, Score=323, Expect=2e-109]; ENSMUSG00000046997, Spsb4, splA/ryanodine receptor domain and SOCS box containing 4, [RH, Score=318, Expect=2e-107]} {Dmel: FBgn0026238, gus, gustavus, [RH, Score=315, Expect=3e-106]} {Celegans: WBGene00021597, spsb-1, SPSB (SPry and Socs Box) family, [RH, Score=268, Expect=4e-86]} {Smed: dd_Smed_v6_9905_0_1, dd_Smed_v6_9905_0_1, [RH, Score=231, Expect=2e-73]} {RNA1509_49640, RNA1509_7590} {RNA1310_13209.1, RNA1509_49640, RNA1509_7590} {RNA1509_49640, RNA1509_7590, RNA815_1061.1}

Cumulative graph for MligTC455_41273

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.809 3.82 0.57510 1.00000
RegionR2 -0.348 3.82 0.56178 0.92376
RegionR3 -0.01 3.82 0.98475 1.00000
RegionR4 0.713 3.82 0.21533 0.50210
RegionR5 1.142 3.82 0.00752 0.04701
RegionR6 0.212 3.82 0.66504 1.00000
RegionR7 -1.045 3.82 0.14957 0.71895
RegionR8 0.145 3.82 0.84632 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.939 3.82 0.59495 1.00000
RegenerationR2 0.399 3.82 0.42521 0.83124
RegenerationR3 0.307 3.82 0.57073 0.89441
RegenerationR4 -0.099 3.82 0.85753 1.00000
RegenerationR5 -0.324 3.82 0.51447 0.86678
RegenerationR6 -0.22 3.82 0.69570 0.92221
RegenerationBL 1.555 3.82 0.00439 0.06042
RegenerationTP 0.705 3.82 0.30998 0.75477


Genes with expression patterns similar to MligTC455_41273

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_41273 558 11.63 Mlig455_037995

Neo: -

Age: -

Region-enriched R5: 1.142/0.04701

 SPSB1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_037995 {REF} {Length: 3087} {TRANSSPLICED} {Pfam: SPRY domain [PF00622.30, score=57.4]; SOCS box [PF07525.18, score=29.4]} {Human: ENSG00000171621, SPSB1, splA/ryanodine receptor domain and SOCS box containing 1, [RH, Score=326, Expect=2e-110]; ENSG00000175093, SPSB4, splA/ryanodine receptor domain and SOCS box containing 4, [RH, Score=316, Expect=1e-106]} {Mouse: ENSMUSG00000039911, Spsb1, splA/ryanodine receptor domain and SOCS box containing 1, [RH, Score=323, Expect=2e-109]; ENSMUSG00000046997, Spsb4, splA/ryanodine receptor domain and SOCS box containing 4, [RH, Score=318, Expect=2e-107]} {Dmel: FBgn0026238, gus, gustavus, [RH, Score=315, Expect=3e-106]} {Celegans: WBGene00021597, spsb-1, SPSB (SPry and Socs Box) family, [RH, Score=268, Expect=4e-86]} {Smed: dd_Smed_v6_9905_0_1, dd_Smed_v6_9905_0_1, [RH, Score=231, Expect=2e-73]} {RNA1509_49640, RNA1509_7590} {RNA1310_13209.1, RNA1509_49640, RNA1509_7590} {RNA1509_49640, RNA1509_7590, RNA815_1061.1}
2. MligTC455_16110 263 5.48 Mlig455_057916, Mlig455_057943

Neo: -

Age: -

 UNC5C 0.978 - - - 0.978 - -

Mlig455_057916 {REF} {Length: 4970} {Pfam: UPA domain [PF17217.5, score=112.3]; ZU5 domain [PF00791.22, score=75.9]; Immunoglobulin domain [PF13927.8, score=44.4]; Immunoglobulin I-set domain [PF07679.18, score=36.4]; Immunoglobulin domain [PF13895.8, score=33.4]; Death domain [PF00531.24, score=33.1]; Immunoglobulin domain [PF00047.27, score=29.6]} {Human: ENSG00000182168, UNC5C, unc-5 netrin receptor C, [Score=240, Expect=2e-66]} {Mouse: ENSMUSG00000059921, Unc5c, unc-5 netrin receptor C, [Score=239, Expect=3e-65]} {Dmel: FBgn0034013, unc-5, [Score=122, Expect=6e-28]} {Celegans: WBGene00006745, unc-5, Netrin receptor unc-5, [Score=149, Expect=2e-36]} {Smed: dd_Smed_v6_10380_0_2, dd_Smed_v6_10380_0_2, [Score=258, Expect=1e-71]} {RNA1509_57093} {RNA1310_9892} {RNA815_16193}

Mlig455_057943 {REF} {Length: 4020} {Pfam: UPA domain [PF17217.5, score=112.3]; ZU5 domain [PF00791.22, score=75.9]; Immunoglobulin domain [PF13927.8, score=44.4]; Immunoglobulin I-set domain [PF07679.18, score=36.4]; Immunoglobulin domain [PF13895.8, score=33.4]; Death domain [PF00531.24, score=33.1]; Immunoglobulin domain [PF00047.27, score=29.6]} {Human: ENSG00000182168, UNC5C, unc-5 netrin receptor C, [Score=240, Expect=2e-66]} {Mouse: ENSMUSG00000059921, Unc5c, unc-5 netrin receptor C, [Score=239, Expect=3e-65]} {Dmel: FBgn0034013, unc-5, [Score=122, Expect=6e-28]} {Celegans: WBGene00006745, unc-5, Netrin receptor unc-5, [Score=149, Expect=2e-36]} {Smed: dd_Smed_v6_10380_0_2, dd_Smed_v6_10380_0_2, [Score=258, Expect=1e-71]} {RNA1509_57093} {RNA1310_9892} {RNA815_16193}
3. MligTC455_29804 2494 51.95 Mlig455_035550

Neo: Neoblast

Age: -

Region-enriched R5: 1.697/0.00001
Region-enriched R4: 1.228/0.02273

 SNRPE 0.952 - - - - 0.952 - Mlig455_035550 {REF} {Length: 549} {TRANSSPLICED} {Pfam: LSM domain [PF01423.24, score=56.6]} {Human: ENSG00000182004, SNRPE, small nuclear ribonucleoprotein polypeptide E, [RH, Score=129, Expect=2e-40]} {Mouse: ENSMUSG00000090553, Snrpe, small nuclear ribonucleoprotein E, [RH, Score=129, Expect=1e-40]} {Dmel: FBgn0261790, SmE, Small ribonucleoprotein particle protein SmE, [RH, Score=119, Expect=8e-37]} {Celegans: WBGene00004919, snr-6, Probable small nuclear ribonucleoprotein E, [RH, Score=117, Expect=7e-36]} {Smed: dd_Smed_v6_741_0_1, dd_Smed_v6_741_0_1, [RH, Score=116, Expect=8e-36]} {RNA1509_35291, RNA1509_45531} {RNA1310_10583.1, RNA1509_35291, RNA1509_45531} {RNA1509_35291, RNA1509_45531, RNA815_32932}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA