M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_41618

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_41618 117 2.43 Mlig455_035357, Mlig455_035397

Neo: -

Age: Down-Up-Down

Mlig455_035357 {REF} {Length: 684} {RNA1509_52527} {RNA1310_39356} {RNA815_31056.1}

Mlig455_035397 {REF} {Length: 1985} {RNA1509_52527} {RNA1310_39356, RNA1509_52527} {RNA1509_52527, RNA815_31056.1}

Cumulative graph for MligTC455_41618

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -8.385 1.887 0.02261 0.40709
RegionR2 1.003 1.887 0.65653 0.98953
RegionR3 2.12 1.887 0.02470 0.26859
RegionR4 0.687 1.887 0.32674 0.64460
RegionR5 0.981 1.887 0.24269 0.55523
RegionR6 2.261 1.887 0.02120 0.26314
RegionR7 1.128 1.887 0.52770 1.00000
RegionR8 0.205 1.887 0.93695 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -1.624 1.887 0.99992 1.00000
RegenerationR2 -0.948 1.887 0.31881 0.75704
RegenerationR3 -2.276 1.887 0.04921 0.38541
RegenerationR4 -1.139 1.887 0.26980 0.71631
RegenerationR5 -4.596 1.887 0.00067 0.04309
RegenerationR6 -2.325 1.887 0.04013 0.25072
RegenerationBL -6.65 1.887 0.00241 0.04075
RegenerationTP -1.898 1.887 0.11312 0.51664


Genes with expression patterns similar to MligTC455_41618

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_41618 117 2.43 Mlig455_035357, Mlig455_035397

Neo: -

Age: Down-Up-Down

 4 1.000 1.000 1.000 1.000 - -

Mlig455_035357 {REF} {Length: 684} {RNA1509_52527} {RNA1310_39356} {RNA815_31056.1}

Mlig455_035397 {REF} {Length: 1985} {RNA1509_52527} {RNA1310_39356, RNA1509_52527} {RNA1509_52527, RNA815_31056.1}
2. MligTC455_53305 76 1.58 Mlig455_039152

Neo: -

Age: logFC(26M/2M)=-0.689

 1.906 - 0.912 0.994 - - - Mlig455_039152 {REF} {Length: 1863} {Smed: dd_Smed_v6_31564_0_1, dd_Smed_v6_31564_0_1, [Score=49.3, Expect=2e-06]} {RNA1509_24214} {RNA1310_21641} {RNA815_11396}
3. MligTC455_40741 306 6.38 Mlig455_062243

Neo: -

Age: -

 1.801 - - 0.974 0.827 - - Mlig455_062243 {REF} {Length: 1935} {RNA1509_17197, RNA1509_50186} {RNA1310_23515, RNA1509_50186} {RNA1509_50186, RNA815_9818}
4. MligTC455_27062 74 1.53 Mlig455_018532

Neo: -

Age: -

Region-enriched R4: 4.522/0.04497

 0.991 - - 0.991 - - - Mlig455_018532 {REF} {Length: 488} {NoTransDecoderORF} {RNA1509_44223} {RNA1310_99471} {RNA815_64986}
5. MligTC455_53467 98 2.05 Mlig455_032611

Neo: -

Age: Down-Down-Up

Region-enriched R8: 4.858/0.00151

 0.971 - - - 0.971 - - Mlig455_032611 {REF} {Length: 2547} {Pfam: Carbohydrate binding domain (family 19) [PF03427.15, score=19.0]} {RNA1509_1990} {RNA1310_48790} {RNA815_9320.1}
6. MligTC455_43305 39 0.82 Mlig455_006345, Mlig455_006394

Neo: -

Age: Down-Up-Down

 TRPA1, TRPM3 0.968 - - - 0.968 - -

Mlig455_006345 {REF} {Length: 3829} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=75.9]; Ankyrin repeats (many copies) [PF13637.8, score=71.1]; Ankyrin repeat [PF13606.8, score=59.8]; Ankyrin repeat [PF00023.32, score=48.2]; Ankyrin repeats (many copies) [PF13857.8, score=42.7]; Regulator of chromosome segregation 1 [PF07326.13, score=19.5]} {Human: ENSG00000104321, TRPA1, transient receptor potential cation channel subfamily A member 1, [Score=58.9, Expect=2e-08]} {Mouse: ENSMUSG00000032769, Trpa1, transient receptor potential cation channel, subfamily A, member 1, [Score=54.7, Expect=3e-07]} {Celegans: WBGene00007801, trpa-1, Transient receptor potential cation channel subfamily A member 1 homolog, [Score=48.9, Expect=9e-06]} {Smed: dd_Smed_v6_21003_0_1, dd_Smed_v6_21003_0_1, [Score=51.2, Expect=1e-06]} {RNA1509_8900} {RNA1310_6398} {RNA815_25504}

Mlig455_006394 {REF} {Length: 5206} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=84.0]; Ankyrin repeats (many copies) [PF13637.8, score=78.3]; Ankyrin repeat [PF13606.8, score=55.9]; Ankyrin repeat [PF00023.32, score=42.3]; Ankyrin repeats (many copies) [PF13857.8, score=42.3]} {Human: ENSG00000083067, TRPM3, transient receptor potential cation channel subfamily M member 3, [Score=87.4, Expect=2e-16]; ENSG00000092439, TRPM7, transient receptor potential cation channel subfamily M member 7, [Score=85.9, Expect=6e-16]} {Mouse: ENSMUSG00000030523, Trpm1, transient receptor potential cation channel, subfamily M, member 1, [Score=90.1, Expect=2e-17]; ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=88.6, Expect=5e-17]} {Dmel: FBgn0265194, Trpm, Transient receptor potential cation channel, subfamily M, [Score=83.2, Expect=2e-15]} {Celegans: WBGene00001651, gon-2, Transient receptor potential channel, [Score=72.8, Expect=2e-12]} {Smed: dd_Smed_v6_26251_0_1, dd_Smed_v6_26251_0_1, [Score=109, Expect=7e-24]} {RNA1509_8900} {RNA1310_6398} {RNA815_25504}
7. MligTC455_15578 382 7.96 Mlig455_029888, Mlig455_063959

Neo: -

Age: Up-Up-Down, logFC(26M/2M)=0.623

 BBOX1 0.967 - 0.967 - - - -

Mlig455_029888 {REF} {Length: 1898} {Pfam: Taurine catabolism dioxygenase TauD, TfdA family [PF02668.18, score=124.5]; Gamma-butyrobetaine hydroxylase-like, N-terminal [PF06155.14, score=51.2]} {Human: ENSG00000129151, BBOX1, gamma-butyrobetaine hydroxylase 1, [RH, Score=266, Expect=4e-85]} {Mouse: ENSMUSG00000041660, Bbox1, butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase), [RH, Score=258, Expect=5e-82]} {Dmel: FBgn0030575, CG5321, [RH, Score=249, Expect=2e-78]} {Celegans: WBGene00001522, gbh-1, Probable gamma-butyrobetaine dioxygenase, [RH, Score=190, Expect=5e-56]} {Smed: dd_Smed_v6_42907_0_1, dd_Smed_v6_42907_0_1, [Score=67.0, Expect=2e-12]} {RNA1509_21760} {RNA1310_10122.2, RNA1509_21760} {RNA1509_21760, RNA815_6301.1}

Mlig455_063959 {REF} {Length: 2107} {Pfam: Taurine catabolism dioxygenase TauD, TfdA family [PF02668.18, score=124.2]; Gamma-butyrobetaine hydroxylase-like, N-terminal [PF06155.14, score=50.9]} {Human: ENSG00000129151, BBOX1, gamma-butyrobetaine hydroxylase 1, [RH, Score=265, Expect=1e-84]} {Mouse: ENSMUSG00000041660, Bbox1, butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase), [RH, Score=258, Expect=4e-82]} {Dmel: FBgn0030575, CG5321, [RH, Score=248, Expect=6e-78]} {Celegans: WBGene00001522, gbh-1, Probable gamma-butyrobetaine dioxygenase, [RH, Score=191, Expect=2e-56]} {Smed: dd_Smed_v6_42907_0_1, dd_Smed_v6_42907_0_1, [Score=67.8, Expect=1e-12]} {RNA1509_21760} {RNA1310_10122.1} {RNA815_6301.1}
8. MligTC455_37046 36 0.75 Mlig455_027583

Neo: -

Age: -

Region-enriched R2: 5.940/0.04459

 0.967 - - - 0.967 - - Mlig455_027583 {REF} {Length: 1359} {Pfam: Anti-sigma-K factor rskA [PF10099.11, score=20.0]} {RNA1310_140241} {RNA815_12716}
9. MligTC455_49211 30 0.63 Mlig455_044533

Neo: -

Age: -

 0.965 - - 0.965 - - - Mlig455_044533 {REF} {Length: 2489} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=139.7]} {Celegans: WBGene00012116, del-4, DEgenerin Like, [Score=62.0, Expect=5e-10]} {Smed: dd_Smed_v6_26469_0_1, dd_Smed_v6_26469_0_1, [Score=51.6, Expect=1e-07]} {RNA1509_50956} {RNA1310_27155} {RNA815_39321}
10. MligTC455_14959 38 0.8 Mlig455_039991

Neo: -

Age: -

 0.963 - - - 0.963 - - Mlig455_039991 {REF} {Length: 749} {Pfam: Protein phosphatase inhibitor 2 (IPP-2) [PF04979.16, score=24.0]} {RNA1310_19355.2}
11. MligTC455_14574 11 0.23 Mlig455_066604

Neo: -

Age: -

 0.962 - - - 0.962 - - Mlig455_066604 {REF} {Length: 1066} {Smed: dd_Smed_v6_83746_0_1, dd_Smed_v6_83746_0_1, [Score=55.5, Expect=6e-10]} {RNA1310_44360} {RNA815_47498}
12. MligTC455_13319 161 3.36 Mlig455_037764

Neo: -

Age: -

 0.96 - - - 0.960 - - Mlig455_037764 {REF} {Length: 3362} {Smed: dd_Smed_v6_7428_0_1, dd_Smed_v6_7428_0_1, [RH, Score=91.7, Expect=6e-19]} {RNA1509_12918} {RNA1310_7526.1, RNA1509_12918} {RNA1509_12918, RNA815_9598.1}
13. MligTC455_18492 32 0.68 Mlig455_026506

Neo: -

Age: -

 ADRA1B 0.959 - - - 0.959 - - Mlig455_026506 {REF} {Length: 1747} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=271.0]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=40.7]} {Human: ENSG00000170214, ADRA1B, adrenoceptor alpha 1B, [Score=244, Expect=8e-74]} {Mouse: ENSMUSG00000050541, Adra1b, adrenergic receptor, alpha 1b, [Score=242, Expect=3e-73]} {Dmel: FBgn0266137, Dop1R2, Dopamine 1-like receptor 2, [RH, Score=310, Expect=2e-96]} {Celegans: WBGene00004777, ser-2, Tyramine receptor Ser-2, [Score=196, Expect=4e-57]} {Smed: dd_Smed_v6_22802_0_1, dd_Smed_v6_22802_0_1, [RH, Score=325, Expect=9e-107]} {RNA1310_108893}
14. MligTC455_32456 153 3.19 Mlig455_034353

Neo: -

Age: -

 ELAVL3 0.959 - - 0.959 - - - Mlig455_034353 {REF} {Length: 5138} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=279.8]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF13893.8, score=27.7]; Occluded RNA-recognition motif [PF16842.7, score=27.3]; Nup53/35/40-type RNA recognition motif [PF05172.15, score=23.3]} {Human: ENSG00000196361, ELAVL3, ELAV like RNA binding protein 3, [Score=191, Expect=7e-54]; ENSG00000162374, ELAVL4, ELAV like RNA binding protein 4, [Score=191, Expect=9e-54]; ENSG00000107105, ELAVL2, ELAV like RNA binding protein 2, [Score=188, Expect=9e-53]; ENSG00000066044, ELAVL1, ELAV like RNA binding protein 1, [Score=185, Expect=3e-52]} {Mouse: ENSMUSG00000003410, Elavl3, ELAV like RNA binding protein 3, [Score=192, Expect=3e-54]; ENSMUSG00000028546, Elavl4, ELAV like RNA binding protein 4, [Score=191, Expect=7e-54]; ENSMUSG00000008489, Elavl2, ELAV like RNA binding protein 1, [Score=188, Expect=7e-53]; ENSMUSG00000040028, Elavl1, ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R), [Score=187, Expect=3e-53]} {Dmel: FBgn0086675, fne, found in neurons, [Score=189, Expect=9e-54]} {Celegans: WBGene00001368, exc-7, [Score=120, Expect=1e-28]} {Smed: dd_Smed_v6_11311_0_2, dd_Smed_v6_11311_0_2, [Score=112, Expect=2e-26]} {RNA1509_13713} {RNA1310_8489, RNA1509_13713} {RNA1509_13713, RNA815_12096}
15. MligTC455_50134 108 2.26 Mlig455_058061

Neo: -

Age: -

 0.952 - - - 0.952 - - Mlig455_058061 {REF} {Length: 2026} {RNA1509_11387} {RNA1310_15929.1} {RNA815_15301.1}
16. MligTC455_52886 457 9.52 Mlig455_060949

Neo: -

Age: logFC(26M/2M)=0.945

 0.951 - - - 0.951 - - Mlig455_060949 {REF} {Length: 1307} {Pfam: Kazal-type serine protease inhibitor domain [PF00050.23, score=70.7]; Kazal-type serine protease inhibitor domain [PF07648.17, score=62.7]} {Dmel: FBgn0052354, CG32354, [Score=48.1, Expect=3e-06]} {Smed: dd_Smed_v6_3649_0_1, dd_Smed_v6_3649_0_1, [Score=49.7, Expect=6e-07]} {RNA1509_43736} {RNA1310_25866.2} {RNA815_10610.1}
17. MligTC455_43077 388 8.08 Mlig455_002766

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.519

 0.95 - 0.950 - - - - Mlig455_002766 {REF} {Length: 1376} {RNA1509_54086} {RNA1310_5535} {RNA815_6435}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA